Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PLCB2 (phospholipase C, beta 2)

Identity

Other namesFLJ38135
HGNC (Hugo) PLCB2
Location 15q15
Location_base_pair Starts at 38367390 and ends at 38387466 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Note 32 exons; DNA size 19,93 Kb.
Transcription mRNA size 4518 bp. Two alternatively spliced forms of PLC-b2 have been identified:
PLC-b2a and PLC-b2b.
The sequence of PLC-b2a consists of 1181 amino acids (molecular weight 133.7 kDa). PLC-b2b transcript lacks 45 nucleotides in the carboxyl-terminal region and the two splice variants differ by 15 amino acid residues, corresponding to aa 864-878.
Pseudogene No known pseudogenes.

Protein

 
  PH: pleckstrin homology domain
EF: EF-hand domain
X and Y: catalytic domains
C2: calcium-binding domain
Description The sequence of PLC-b2 contains a PH-domain in the amino-terminal region, that binds to polyhosphoinositides and to cytoskeleton proteins. The catalytic site corresponds to the X and Y domains, highly conserved among PLCs. A C2 domain, present in numerous signaling molecules, is involved in the calcium binding. The long carboxyl-terminal region, located downstream to the C2 domain, is involved in the Gaq mediated activation of the catalytic domains and contains a nuclear localization signal. Additional EF domains are located between the PH and X regions and seem to simply constitute a flexible linker to the X-Y domain.
Expression PLC-b2, first isolated from a HL-60 cDNA library, is expressed predominantly in cells of haematopoietic origin. The amount of PLC-b2 correlates with the functional maturation of differentiating cells. In platelets, leukocytes and erythroleukemia cells, both the two alternatively spliced forms are present.
PLC-b2 is weakly expressed in breast epithelial cells and shows high levels in tumoral mammary tissues. PLC-b2 was also identified in ATP-secreting taste bud cells.
Localisation PLC-b2 has both a cytoplasmic and a nuclear localization. In particular, PLC-b2 accumulates inside the nuclear compartment during agonist-induced granulocytic differentiation of tumoral myeloid precursors.
In platelets, expressing both splicing variants, PLC-b2a is most abundant in the nuclear compartment.
By means of immunocytochemical analysis, it has been demonstrated that in promyelocytes differentiating along the neutrophil lineage, PLC-b2 distribution evokes the spatial organization of the cytoskeleton.
Function PLC-b2 catalyzes the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) generating the second messenger molecules inositol 1,4,5-trisphosphate (IP3) and diacylglycerol (DAG).
In hematopoietic cells, PLC-b2 plays a crucial role in platelet activation and in response of neutrophils to chemoattractants.
During maturation of tumoral myeloid precursors, it has been demonstrated that the phosphodiesterase activity of PLC-b2 on the actin-associated PIP2 may be responsible, by modifying the phosphoinositide pools, for the modifications of cytoskeleton architecture that take place during motility of differentiating promyelocytes.
In taste bud cells, PLC-b2 is a marker of early differentiation and functional taste signalling.
Homology PLC-b2 is related to PLC-b1 with an amino acid sequence identity of 48%.

Implicated in

Entity Acute Promyelocytic Leukaemia (APL)
Note This hematopoietic disorder is a M3 subtype of acute myeloblastic leukemia and is characterized by a block of granulocytopoiesis at the promyelocytic stage. APL blasts present a balanced reciprocal t(15;17) chromosomal translocation encoding the PML/ RARA fusion protein that plays a key role in the pathogenesis of the disease.
Disease PLC-b2, highly present in neutrophils of peripheral blood, is weakly expressed in blasts purified from patients with APL and in APL-derived cell lines.
Prognosis PLC-b2 shows a large increase of expression during ATRA (all-trans-retinoic acid ) and/or As2O3-induced granulocytic differentiation of both APL-derived cell lines and blasts purified from patients with APL. PLC-b2 expression during differentiating treatments correlates with the granulocytic maturation levels reached by myeloid precursors. In addition, the level of PLC-b2 after ex-vivo ATRA treatment of APL blasts strikingly correlates with the responsiveness of APL patients to ATRA-based therapies.
This evidence demonstrates that PLC-b2 represents a specific marker for monitoring the agonist-induced overcoming of the maturation blockade of tumoral promyelocytes.
Oncogenesis It has been reported that co-repressors bound to PML-RARa are released from DNA upon both ATRA and As2O3-treatment of APL cells leading to the activation of genes repressed by the fusion protein. This suggests that the reduced expression of PLC-b2, whose gene is located on chromosome 15, which is involved in the (15;17) translocation, may be related to the presence of the fusion protein. The increased expression of PLC-b2, induced by both ATRA and As2O3, may be related indeed to the removal of the fusion protein, that seems to constitute a common step of the differentiation pathways activated by the two agonists.
  
Entity Breast cancer
Note Breast cancer is highly heterogeneous and, during its sequential in vivo progression from atypical hyperproliferation to metastatic disease, tumor cells undergo phenotype alterations, including the loss, to a variable extent, of epithelial-like features, and the gain of more aggressive and invasive mesenchymal-like traits. Like most human neoplasm, breast cancer has aberrations in signal transduction elements that can lead to increased proliferative potential, sustained angiogenesis, apoptosis inhibition and tissue invasion and metastasis. The portrait of breast tumors remains stable during progression and no major changes appear to explain why a tumor may evolve to the metastatic stage and, at present, no marker has been clearly associated with the progression from in situ to invasiveness.
Disease It has recently been demonstrated, by means of immunohistochemical analysis on tissue microarrays composed of breast cancer specimens and normal epithelia, that PLC-b2, poorly expressed in normal tissues, is up-regulated in almost all tumor cells. In particular, the amount of PLC-b2 correlates with morphological features of the different primary cancers, since weak expression is showed by tumors that retain a differentiated appearance, while a progressively higher amount of protein was revealed in poorly differentiated and undifferentiated tumors.
Prognosis By analyzing the relationship between PLC-b2 levels and biological and clinic-pathological factors, it has been found that the expression of PLC-b2 strikingly correlates with histological grade, mitotic index and size of primary tumors. No differences in PLC-b2 amount were found in breast tumors that express estrogens and/or progesterone receptors, while tumors negative for at least one of the two receptors showed elevated expression of this enzyme, as well as the majority of HER-2 positive tumours. These data suggest that high amounts of PLC-b2 might be associated to a worse response to therapy.
Survival analysis of cancer-related death indicates that patients whose primary tumors express low levels of PLC-b2 show an overall survival significantly higher in comparison to patients whose primary tumors express high levels of protein. In addition, elevated PLC-b2 expression of primary breast cancer is associated with a shorter relapse-free time interval.
  

External links

Nomenclature
HGNC (Hugo)PLCB2   9055
Entrez_Gene (NCBI)PLCB2  5330  phospholipase C, beta 2
Cards
AtlasPLCB2ID41743ch15q15
GeneCards (Weizmann)PLCB2
Ensembl (Hinxton)ENSG00000137841 [Gene_View]  PLCB2 [Vega]
AceView (NCBI)PLCB2
Genatlas (Paris)PLCB2
euGene (Indiana)5330
SOURCE (Stanford)NM_004573
Gene Expression (Array Express) ENSG00000137841
Genomic and cartography
GoldenPath (UCSC)PLCB2  -  15q15   chr15:38367390-38387466 -  15q15   [Description]    (hg18-Mar_2006)
EnsemblPLCB2 - 15q15 [CytoView]
Mapping of homologs : NCBIPLCB2 [Mapview]
OMIM604114   
Gene and transcription
Gene : Genbank (Entrez)AB209583 AK095454 AK130831 AK291657 BC000939
Reference sequence (RefSeq transcript) :SRSNM_004573
Reference transcript : EntrezNM_004573
RefSeq genomic : SRSAC_000058 AC_000147 NC_000015 NT_010194 NW_001838214 NW_925840
RefSeq genomic : EntrezAC_000058 AC_000147 NC_000015 NT_010194 NW_001838214 NW_925840
Consensus coding sequences : CCDS NCBIPLCB2
Cluster EST : UnigeneHs.355888 [ SRS ] Hs.355888 [ NCBI ]
Alternative Splicing : Fast-db (Paris)2104
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ00722 (SRS) Q00722 (Expasy) Q00722 (Uniprot)
With graphics : InterProQ00722
Splice isoforms : VarSplice FASTAQ00722(VarSplice FASTA)
Domaine pattern : Prosite (SRS)C2 (PS50004)    PIPLC_X_DOMAIN (PS50007)    PIPLC_Y_DOMAIN (PS50008)   
Domain pattern : Prosite (Expaxy)C2 (PS50004)    PIPLC_X_DOMAIN (PS50007)    PIPLC_Y_DOMAIN (PS50008)   
Domains : Interpro (SRS)C2_Ca-dep    C2_Ca/lipid-bd_dom_CaLB    C2_membr_targeting    EF-hand-like_dom    Phospholipase_C_EF-hand-like    Phospholipase_C_Pinositol-sp_C    Phospholipase_C_Pinositol-sp_Y    PLC-beta_C    PLC-like_Pdiesterase_TIM-brl    PLipase_C_PInositol-sp_X_dom   
Domains : Interpro (EBI)C2_Ca-dep    C2_Ca/lipid-bd_dom_CaLB    C2_membr_targeting    EF-hand-like_dom    Phospholipase_C_EF-hand-like    Phospholipase_C_Pinositol-sp_C    Phospholipase_C_Pinositol-sp_Y    PLC-beta_C    PLC-like_Pdiesterase_TIM-brl    PLipase_C_PInositol-sp_X_dom   
Related proteins : CluSTrQ00722
Domain families : Pfam SRSC2 (PF00168)    efhand_like (PF09279)    PI-PLC-X (PF00388)    PI-PLC-Y (PF00387)    PLC-beta_C (PF08703)   
Domain families : Pfam SangerC2 (PF00168)    efhand_like (PF09279)    PI-PLC-X (PF00388)    PI-PLC-Y (PF00387)    PLC-beta_C (PF08703)   
Domain families : Pfam NCBIpfam00168    pfam09279    pfam00388    pfam00387    pfam08703   
Domain families : Smart EMBLC2 (SM00239)  PLCXc (SM00148)  PLCYc (SM00149)  
Blocks (Seattle)Q00722
Crystal structure of protein : PDB SRS2FJU    2ZKM   
Crystal structure of protein : PDBSum2FJU    2ZKM   
Crystal structure of protein : IMB2FJU    2ZKM   
Crystal structure of protein : PDB RSDB2FJU    2ZKM   
HPRD04985
Protein Interaction databases
DIP (DOE-UCLA)Q00722
IntAct (EBI)Q00722
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIPLCB2
SNP : GeneSNP UtahPLCB2
SNP : HGBasePLCB2
Genetic variants : HAPMAPPLCB2
Somatic Mutations in Cancer : COSMICPLCB2 
Mutations and Diseases : HGMDPLCB2
Hereditary diseases : OMIM604114   
Hereditary diseases : GENETests604114   
Diseases : Genetic AssociationPLCB2
General knowledge
Homologs : HomoloGenePLCB2
Homology/Alignments : Family Browser UCSCPLCB2
Phylogenetic Trees/Animal Genes : TreeFamPLCB2
Catalytic activity : Enzyme3.1.4.11 [ Enzyme-Expasy ]   3.1.4.11 [ Enzyme-SRS ]   3.1.4.11 [ IntEnz-EBI ]   3.1.4.11 [ BRENDA ]   3.1.4.11 [ KEGG ]   
Chemical/Protein Interactions : CTD5330
Keywords Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  phosphoinositide phospholipase C activity  signal transducer activity  calcium ion binding  protein binding  phospholipid binding  Golgi apparatus  cytosol  phospholipid metabolic process  activation of phospholipase C activity  intracellular signaling cascade  lipid catabolic process  hydrolase activity  
Keywords Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  phosphoinositide phospholipase C activity  signal transducer activity  calcium ion binding  protein binding  phospholipid binding  Golgi apparatus  cytosol  phospholipid metabolic process  activation of phospholipase C activity  intracellular signaling cascade  lipid catabolic process  hydrolase activity  
Pathways : BIOCARTA
Pathways : KEGGInositol phosphate metabolismCalcium signaling pathwayPhosphatidylinositol signaling systemWnt signaling pathwayGap junctionLong-term potentiationLong-term depressionTaste transductionGnRH signaling pathway
Other databases
Probes
Probes : ImagenesPLCB2 Related clones (RZPD - Berlin)
Literature
PubMed38 Pubmed reference(s) in Entrez
PubGenePLCB2

Bibliography

Cloning, sequencing, expression, and Gq-independent activation of phospholipase C-beta 2.
Park D, Jhon DY, Kriz R, Knopf J, Rhee SG
The Journal of biological chemistry. 1992 ; 267 (23) : 16048-16055.
PMID 1644792
 
Intranuclear translocation of phospholipase C beta2 during HL-60 myeloid differentiation.
Bertagnolo V, Marchisio M, Capitani S, Neri LM
Biochemical and biophysical research communications. 1997 ; 235 (3) : 831-837.
PMID 9207247
 
Roles of PLC-beta2 and -beta3 and PI3Kgamma in chemoattractant-mediated signal transduction.
Li Z, Jiang H, Xie W, Zhang Z, Smrcka AV, Wu D
Science (New York, N.Y.). 2000 ; 287 (5455) : 1046-1049.
PMID 10669417
 
Structure, function, and control of phosphoinositide-specific phospholipase C.
Rebecchi MJ, Pentyala SN
Physiological reviews. 2000 ; 80 (4) : 1291-1335.
PMID 11015615
 
Selective up-regulation of phospholipase C-beta2 during granulocytic differentiation of normal and leukemic hematopoietic progenitors.
Bertagnolo V, Marchisio M, Pierpaoli S, Colamussi ML, Brugnoli F, Visani G, Zauli G, Capitani S
Journal of leukocyte biology. 2002 ; 71 (6) : 957-965.
PMID 12050180
 
PLC-beta2 is highly expressed in breast cancer and is associated with a poor outcome: a study on tissue microarrays.
Bertagnolo V, Benedusi M, Querzoli P, Pedriali M, Magri E, Brugnoli F, Capitani S
International journal of oncology. 2006 ; 28 (4) : 863-872.
PMID 16525635
 
PLC-beta2 monitors the drug-induced release of differentiation blockade in tumoral myeloid precursors.
Brugnoli F, Bovolenta M, Benedusi M, Miscia S, Capitani S, Bertagnolo V
Journal of cellular biochemistry. 2006 ; 98 (1) : 160-173.
PMID 16408290
 
Taste bud contains both short-lived and long-lived cell populations.
Hamamichi R, Asano-Miyoshi M, Emori Y
Neuroscience. 2006 ; 141 (4) : 2129-2138.
PMID 16843606
 
Phospholipase C-beta 2 promotes mitosis and migration of human breast cancer-derived cells.
Bertagnolo V, Benedusi M, Brugnoli F, Lanuti P, Marchisio M, Querzoli P, Capitani S
Carcinogenesis. 2007 ; 28 (8) : 1638-1645.
PMID 17429106
 
PLC-beta2 activity on actin-associated polyphosphoinositides promotes migration of differentiating tumoral myeloid precursors.
Brugnoli F, Bavelloni A, Benedusi M, Capitani S, Bertagnolo V
Cellular signalling. 2007 ; 19 (8) : 1701-1712.
PMID 17478077
 
Alternative splice variants of phospholipase C-beta2 are expressed in platelets: effect on Galphaq-dependent activation and localization.
Sun L, Mao G, Kunapuli SP, Dhanasekaran DN, Rao AK
Platelets. 2007 ; 18 (3) : 217-223.
PMID 17497434
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2007Valeria Bertagnolo, Federica Brugnoli, Mascia Benedusi, Silvano Capitani
Signal Transduction Unit, Laboratory of Cell Biology, Section of Human Anatomy, Department of Morphology and Embryology, University of Ferrara, Ferrara, Italy

Citation

This paper should be referenced as such :
Bertagnolo V, Brugnoli F, Benedusi M, Capitani S . PLCB2 (phospholipase C, beta 2). Atlas Genet Cytogenet Oncol Haematol. May 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/PLCB2ID41743ch15q15.html

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indexed on : Sat Feb 27 10:51:01 CET 2010

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