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PVRL4 (poliovirus receptor-related 4)

Identity

Other namesLNIR
PRR4
Nectin-4
HGNC PVRL4
Location 1q23.3
Location_base_pair Starts at 159308120 and ends at 159325966 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description The PVRL4 gene spans 17.85 kb, consists of 9 exons and 8 introns.
Transcription The human Nectin-4 mRNA consists of 1458 or 1533 bases (alternative splice forms).

Protein

Note Nectin-4 belongs to the family of adhesion molecules: Nectins. Four members have been described ( Nectin-1, Nectin-2, Nectin-3 and Nectin-4). Nectins belong to the immunoglobulin superfamily and exhibit three Ig-like domain in their extracellular region.
 
  Extracellular region of dimeric Nectin-4 is composed with three Ig domains of Ig V and IgC types. The last 4 aminoacids in the C-terminus region binds to the scaffold F-actin binding protein AF-6/afadin. Nectin-4 ectodomain is shedded from cell surface by the metalloprotease TACE/ ADAM-17.
Description Nectin-4 protein is 510 aminoacid long. Molecular weight is 66 kDa.
Expression Nectin-4 expression in mainly expressed during development. In mice Nectin-4 transcript are detected at day 11 d.p.c. In human Nectin-4 is not expressed in adult tissues.
Localisation Nectin-4 is expressed at epithelial adherens junctions. In tumors Nectin-4 expression can be observed in the cytoplasm.
Function Nectin-4 binds Nectin-1 through IgV domain interaction. Nectin-1 is involved in development. Nectin-4 increases tumor cell migration.
Homology With other members of the family.

Implicated in

Entity Breast carcinoma of basal subtypes.
Disease Nectin-4 is found in breast tumors and its expression correlates with the basal subtype. The soluble form is detected in sera of patients with metastatic breast carcinoma and is a marker of disease progression.
Prognosis Adverse prognosis.
 
Oncogenesis Related to tumor cell migration.
  

External links

Nomenclature
HGNCPVRL4   19688
Entrez_GenePVRL4  81607  poliovirus receptor-related 4
Cards
AtlasPVRL4ID44141ch1q23
GeneCardsPVRL4
EnsemblPVRL4 [Search_View]   ENSG00000143217 [Gene_View]  PVRL4 [Vega]
GenatlasPVRL4
GeneLynxPVRL4
eGenomePVRL4
euGene81607
Genomic and cartography
GoldenPathPVRL4  -  1q23.3   chr1:159308120-159325966 -  1q22-q23.2   [Description]    (hg18-Mar_2006)
EnsemblPVRL4 - 1q22-q23.2 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGenePVRL4
Gene and transcription
GenbankAF160477 [ ENTREZ ]
GenbankAF218028 [ ENTREZ ]
GenbankAF426163 [ ENTREZ ]
GenbankAK027753 [ ENTREZ ]
GenbankBC010423 [ ENTREZ ]
RefSeqNM_030916 [ SRS ]    NM_030916 [ ENTREZ ]
RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeqAC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeqNT_004487 [ SRS ]    NT_004487 [ ENTREZ ]
RefSeqNW_001838531 [ SRS ]    NW_001838531 [ ENTREZ ]
RefSeqNW_925683 [ SRS ]    NW_925683 [ ENTREZ ]
CCDSPVRL4 CCDS - NCBI
AceViewPVRL4 AceView - NCBI
UnigeneHs.492490 [ SRS ]    Hs.492490 [ NCBI ]     HS492490 [ spliceNest ]
Fast-db17478 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ96NY8 [ SRS]    Q96NY8 [ EXPASY ]     Q96NY8 [ INTERPRO ]     Q96NY8 [ UNIPROT ] Q96NY8 [ VarSplice ]
PrositePS50835 IG_LIKE [ SRS ]    PS50835 IG_LIKE [ Expasy ]
InterproIPR013162 CD80_C2-set [ SRS ]    IPR013162 CD80_C2-set [ EBI ]
InterproIPR013151 Ig [ SRS ]    IPR013151 Ig [ EBI ]
InterproIPR007110 Ig-like [ SRS ]    IPR007110 Ig-like [ EBI ]
InterproIPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
InterproIPR003599 Ig_sub [ SRS ]    IPR003599 Ig_sub [ EBI ]
InterproIPR003598 Ig_sub2 [ SRS ]    IPR003598 Ig_sub2 [ EBI ]
InterproIPR013106 Ig_V-set [ SRS ]    IPR013106 Ig_V-set [ EBI ]
CluSTrQ96NY8
PfamPF08205 C2-set_2 [ SRS ]    PF08205 C2-set_2 [ Sanger ]    pfam08205 [ NCBI-CDD ]
PfamPF00047 ig [ SRS ]    PF00047 ig [ Sanger ]    pfam00047 [ NCBI-CDD ]
PfamPF07686 V-set [ SRS ]    PF07686 V-set [ Sanger ]    pfam07686 [ NCBI-CDD ]
SmartSM00409 IG [EMBL]
SmartSM00408 IGc2 [EMBL]
BlocksQ96NY8
HPRD17934
Protein Interaction databases
DIPQ96NY8
IntActQ96NY8
Polymorphism : SNP, mutations, diseases
OMIM609607    [ map ]   
GENECLINICS609607
SNPPVRL4 [dbSNP-NCBI]  
SNPNM_030916 [SNP-NCI]  
SNPPVRL4 [GeneSNPs - Utah]  PVRL4] [HGBASE - SRS]
HAPMAPPVRL4 [HAPMAP]  
HGMDPVRL4
Genetic AssociationPVRL4
CDC HuGEPVRL4
General knowledge
Family BrowserPVRL4 [UCSC Family Browser]
SOURCENM_030916
SMDHs.492490
SAGEHs.492490
GOprotein binding [Amigo]  protein binding
GOextracellular region [Amigo]  extracellular region
GOplasma membrane [Amigo]  plasma membrane
GOcell adhesion [Amigo]  cell adhesion
GOintegral to membrane [Amigo]  integral to membrane
GOcell junction [Amigo]  cell junction
KEGGAdherens junction
PubGenePVRL4
TreeFamPVRL4
CTD81607 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePVRL4 Related clones (RZPD - Berlin)
PubMed
PubMed6 Pubmed reference(s) in Entrez

Bibliography

Nectin4/PRR4, a new afadin-associated member of the nectin family that trans-interacts with nectin1/PRR1 through V domain interaction.
Reymond N, Fabre S, Lecocq E, AdelaˆØde J, Dubreuil P, Lopez M
The Journal of biological chemistry. 2001 ; 276 (46) : 43205-43215.
PMID 11544254
 
Prominent role of the Ig-like V domain in trans-interactions of nectins. Nectin3 and nectin 4 bind to the predicted C-C'-C-D beta-strands of the nectin1 V domain.
Fabre S, Reymond N, Cocchi F, Menotti L, Dubreuil P, Campadelli-Fiume G, Lopez M
The Journal of biological chemistry. 2002 ; 277 (30) : 27006-27013.
PMID 12011057
 
Nectin-4, a new serological breast cancer marker, is a substrate for tumor necrosis factor-alpha-converting enzyme (TACE)/ADAM-17.
Fabre-Lafay S, Garrido-Urbani S, Reymond N, Gonˆßalves A, Dubreuil P, Lopez M
The Journal of biological chemistry. 2005 ; 280 (20) : 19543-19550.
PMID 15784625
 
Nectin-4 is a new histological and serological tumor associated marker for breast cancer.
Fabre-Lafay S, Monville F, Garrido-Urbani S, Berruyer-Pouyet C, Ginestier C, Reymond N, Finetti P, Sauvan R, Adˆ©laˆØde J, Geneix J, Lecocq E, Popovici C, Dubreuil P, Viens P, Gonˆßalves A, Charafe-Jauffret E, Jacquemier J, Birnbaum D, Lopez M
BMC cancer. 2007 ; 7 : page 73.
PMID 17474988
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2008Marc Lopez
Centre de Recherches en Cancérologie de Marseille, Inserm UMR599, 27 bvd Leiroure,13009 Marseille, France

Citation

This paper should be referenced as such :
Lopez M . PVRL4 (poliovirus receptor-related 4). Atlas Genet Cytogenet Oncol Haematol. January 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/PVRL4ID44141ch1q23.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Nov 9 19:46:22 2008


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