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RAP2A RAP2A, member of RAS oncogene family

Identity

HGNC (Hugo) RAP2A
Location 13q34
Location_base_pair Starts at 96884476 and ends at 96918252 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

 
Description The gene contains 2 coding exons separated by a large (29,418 bp) intron covering a total of 30,065 bp on chromosome 13

Protein

Description Rap2 is a member of the Ras superfamily of monomeric GTPases, closely related to Ras. There are twoisoforms, RAP2A and Rap2B that share 90% identity and are encoded by two different genes. Rap2 proteinsshare 50% identity with Ras proteins, including the regions involved in GDP/GTP binding (hence Rap2A hasvery similar biochemical properties to Ras), C-terminal CAAX domain leading to prenylation (farnesylationfor Rap2A and geranylgeranylation in the case of Rap2B) and palmitoylation. The effector region of Rap2 isvery similar to that of Ras proteins, yet Ras and Rap2 do share seem to share effectors.
Expression ubiquitous ; higher in brain and hemopoIetic tissues
Localisation plasma and/or intracellular membranes (endoplasmic reticulum)
Function unknonw
Homology 90% identical to Rap2B, 60% identical to Rap1, 50 % to Ras proteins

Mutations

Germinal unknown

Implicated in

Entity no implication in pathologies characterized so far
  

To be noted

see also RAP family

External links

Nomenclature
HGNC (Hugo)RAP2A   9861
Entrez_Gene (NCBI)RAP2A  5911  RAP2A, member of RAS oncogene family
Cards
AtlasRAP2AID274
GeneCards (Weizmann)RAP2A
Ensembl (Hinxton)ENSG00000125249 [Gene_View]  RAP2A [Vega]
AceView (NCBI)RAP2A
Genatlas (Paris)RAP2A
euGene (Indiana)5911
SOURCE (Stanford)NM_021033
Gene Expression (Array Express) ENSG00000125249
Genomic and cartography
GoldenPath (UCSC)RAP2A  -  13q34   chr13:96884476-96918252 +  13q34   [Description]    (hg18-Mar_2006)
EnsemblRAP2A - 13q34 [CytoView]
Mapping of homologs : NCBIRAP2A [Mapview]
OMIM179540   
Gene and transcription
Gene : Genbank (Entrez)AF205602 AF493914 AK090533 AK094586 AK315139
Reference sequence (RefSeq transcript) :SRSNM_021033
Reference transcript : EntrezNM_021033
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_009952 NW_001838084 NW_925517
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_009952 NW_001838084 NW_925517
Consensus coding sequences : CCDS NCBIRAP2A
Cluster EST : UnigeneHs.508480 [ SRS ] Hs.508480 [ NCBI ]
Alternative Splicing : Fast-db (Paris)7819
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP10114 (SRS) P10114 (Expasy) P10114 (Uniprot)
With graphics : InterProP10114
Splice isoforms : VarSplice FASTAP10114(VarSplice FASTA)
Domaine pattern : Prosite (SRS)RAS (PS51421)   
Domain pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (SRS)GTPase_Ras    Ras    Ras_GTPase    Ras_small_GTPase    Small_GTP_bd   
Domains : Interpro (EBI)GTPase_Ras    Ras    Ras_GTPase    Ras_small_GTPase    Small_GTP_bd   
Related proteins : CluSTrP10114
Domain families : Pfam SRSRas (PF00071)   
Domain families : Pfam SangerRas (PF00071)   
Domain families : Pfam NCBIpfam00071   
Domain families : Smart EMBLRAS (SM00173)  
Blocks (Seattle)P10114
Crystal structure of protein : PDB SRS1KAO    2RAP    3RAP   
Crystal structure of protein : PDBSum1KAO    2RAP    3RAP   
Crystal structure of protein : IMB1KAO    2RAP    3RAP   
Crystal structure of protein : PDB RSDB1KAO    2RAP    3RAP   
HPRD01547
Protein Interaction databases
DIP (DOE-UCLA)P10114
IntAct (EBI)P10114
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRAP2A
SNP : GeneSNP UtahRAP2A
SNP : HGBaseRAP2A
Genetic variants : HAPMAPRAP2A
Somatic Mutations in Cancer : COSMICRAP2A 
Mutations and Diseases : HGMDRAP2A
Hereditary diseases : OMIM179540   
Hereditary diseases : GENETests179540   
Diseases : Genetic AssociationRAP2A
General knowledge
Homologs : HomoloGeneRAP2A
Homology/Alignments : Family Browser UCSCRAP2A
Phylogenetic Trees/Animal Genes : TreeFamRAP2A
Chemical/Protein Interactions : CTD5911
Keywords Ontology : AmiGOnucleotide binding  GTPase activity  protein binding  GTP binding  intracellular  plasma membrane  signal transduction  small GTPase mediated signal transduction  
Keywords Ontology : EGO-EBInucleotide binding  GTPase activity  protein binding  GTP binding  intracellular  plasma membrane  signal transduction  small GTPase mediated signal transduction  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesRAP2A Related clones (RZPD - Berlin)
Literature
PubMed36 Pubmed reference(s) in Entrez
PubGeneRAP2A

Bibliography

Human cDNAs rap1 and rap2 homologous to the Drosophila gene Dras3 encode proteins closely related to ras in the 'effector' region.
Pizon V, Chardin P, Lerosey I, Olofsson B, Tavitian A
Oncogene. 1988 ; 3 (2) : 201-204.
PMID 3045729
 
The product of the rap2 gene, member of the ras superfamily. Biochemical characterization and site-directed mutagenesis.
Lerosey I, Chardin P, de Gunzburg J, Tavitian A
The Journal of biological chemistry. 1991 ; 266 (7) : 4315-4321.
PMID 1900290
 
Post-translational processing and subcellular localization of the Ras-related Rap2 protein.
Bˆ©ranger F, Tavitian A, de Gunzburg J
Oncogene. 1991 ; 6 (10) : 1835-1842.
PMID 1923507
 
Identification of a specific effector of the small GTP-binding protein Rap2.
Janoueix-Lerosey I, Pasheva E, de Tand MF, Tavitian A, de Gunzburg J
European journal of biochemistry / FEBS. 1998 ; 252 (2) : 290-298.
PMID 9523700
 
Rap2 as a slowly responding molecular switch in the Rap1 signaling cascade.
Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, Hashimoto Y, Hamaguchi M, Kurata T, Nagashima K, Matsuda M
Molecular and cellular biology. 2000 ; 20 (16) : 6074-6083.
PMID 10913189
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2001Jean de Gunzburg

Citation

This paper should be referenced as such :
Gunzburg J de . RAP2A RAP2A, member of RAS oncogene family. Atlas Genet Cytogenet Oncol Haematol. May 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/RAP2AID274.html

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indexed on : Sat Feb 27 10:53:17 CET 2010

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