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RBBP8 (retinoblastoma binding protein 8)

Identity

Other namesCTIP
RIM
HGNC (Hugo) RBBP8
LocusID (NCBI) 5932
Location 18q11.2
Location_base_pair Starts at 20513295 and ends at 20606449 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
Description The gene encompasses 93.155 Kb of DNA.
Transcription 3279 bp mRNA.

Protein

 
  Domain structure of hCtIP. All known CtIP proteins contain a highly conserved CtBP-binding motif, two CXXC motifs and a phosphorylation site that corresponds to Ser327 in hCtIP. The Rb-binding motif is conserved only in mammalian CtIP. The N-terminal and C-terminal regions of all the CtIP homologs show high degrees of conservation. The ATM target site that corresponds to Ser664 is not conserved in CtIP of certain species (e.g., mouse and chicken). The A9 repeat, a tumor-specific nucleotide polymorphism (G2115A) and a nucleotide polymorphism (G1766A) resulting in an amino acid substitution (K589H) observed in tumor and normal cells are indicated. The region between amino acid positions 45 to 160 is a coiled-coil. A C-terminal region conserved between CtIPs and the plant (Arabidopsis thaliana) gamma response 1 (AtGR1) protein is also indicated (light blue).
Description 897 a.a. polypeptide.
Expression Widely expressed in various human tissues - thymus and testis appear to express the highest levels.
Localisation Predominantly localized in the nucleus; contains 4 potential nuclear localization signals and two leucine zipper motifs, a Rb binding domain, a CtBP binding motif, a coiled-coil domain, two CXXC motifs similar to the Zn-hook motif of Rad50.
Function Potential modulator of BRCA1 in transcriptional regulation, DNA repair and cell cycle checkpoint control.
Family: ezrin/radixin/myosin family
Category: regulatory, transcription factor, antioncogene
Interaction: binds to Rb, CtBP, BRCA1, LMO4, SIAH1, Ikaros, MRE11 complex.
Homology Homolog to C.elegans r05d3.4, fission yeast Ctp1. CtIP is conserved among vertebrates. A C-terminal domain of CtIP is homologous to plant gamma response 1(AtGR1) protein of Arabidopsis thaliana.
Variant: CtIP splice variant (Genebank Accession # NP_976037) with 867 a.a. is identical to CtIP except the C-terminal region (a.a. 786-867).

Mutations

Germinal Knockout mice experiment has shown that inactivation of both CtIP alleles resulted in early embryonic lethality at stage E4. However the heterozygous CtIP+/- mice were viable with reduced life span due to development of multiple tumors.
Somatic A number of human tumor cell lines derived from various tissues did not detect any homozygous deletion within the CtIP gene. However, some missense and silent mutations have been reported.

Implicated in

Entity Tumors
Disease Recent studies with mutant mice have raised the possibility that Ctip might be a tumor suppressor gene. Inactivation of both Ctip alleles results in early embryonic lethality at stage E4. However, the heterozygous Ctip+/- mice are viable, but the life span is reduced compared to Ctip+/+ animals due to the development of multiple tumors. Among the types of tumors observed in Ctip+/- animals, B and T cell lymphomas (B-NHL and T-NHL) are most prevalent. Enhanced lymphoid specificity of tumorigenesis might reflect the fact that these tissues are active sites of DNA repair and CtIP insufficiency might contribute to lymphoma development due to potential defects in DNA repair.
Oncogenesis Since CtIP seems to be very important for the activities of tumor suppressors such as BRCA1, pRb family and Ikaros family, CtIP may be a tumor suppressor protein.
  

External links

Nomenclature
HGNC (Hugo)RBBP8   9891
Entrez_Gene (NCBI)RBBP8  5932  retinoblastoma binding protein 8
Cards
AtlasRBBP8ID42066ch18q11
GeneCards (Weizmann)RBBP8
Ensembl (Hinxton)ENSG00000101773 [Gene_View]  chr18:20513295-20606449 [Contig_View]  RBBP8 [Vega]
AceView (NCBI)RBBP8
Genatlas (Paris)RBBP8
euGene (Indiana)5932
SOURCE (Stanford)NM_002894 NM_203291 NM_203292
Genomic and cartography
GoldenPath (UCSC)RBBP8  -  18q11.2   chr18:20513295-20606449 +  18q11.2   [Description]    (hg19-Feb_2009)
EnsemblRBBP8 - 18q11.2 [CytoView]
Mapping of homologs : NCBIRBBP8 [Mapview]
OMIM251255   604124   606744   
Gene and transcription
Genbank (Entrez)AF043431 AK292481 BC001170 BC030590 BG723261
RefSeq transcript (SRS)NM_002894 NM_203291 NM_203292
RefSeq transcript (Entrez)NM_002894 NM_203291 NM_203292
RefSeq genomic (SRS)AC_000150 NC_000018 NG_012121 NT_010966 NW_001838467
RefSeq genomic (Entrez)AC_000150 NC_000018 NG_012121 NT_010966 NW_001838467
Consensus coding sequences : CCDS (NCBI)RBBP8
Cluster EST : UnigeneHs.546282 [ SRS ] Hs.546282 [ NCBI ]
Alternative Splicing : Fast-db (Paris)2163
Alternative Splicing GalleryENSG00000101773
Gene ExpressionRBBP8 [ NCBI-GEO ]   RBBP8 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99708 (SRS) Q99708 (Uniprot)
With graphics : InterProQ99708
Splice isoforms : SwissVarQ99708(Swissvar)
Domains : Interpro (SRS)CtIP_N    DNA-repair_Sae2/CtIP   
Domains : Interpro (EBI)CtIP_N    DNA-repair_Sae2/CtIP   
Related proteins : CluSTrQ99708
Domain families : Pfam (SRS)CtIP_N (PF10482)    SAE2 (PF08573)   
Domain families : Pfam (Sanger)CtIP_N (PF10482)    SAE2 (PF08573)   
Domain families : Pfam (NCBI)pfam10482    pfam08573   
Blocks (Seattle)Q99708
PDB (SRS)2L4Z   
PDB (PDBSum)2L4Z   
PDB (IMB)2L4Z   
PDB (RSDB)2L4Z   
Human Protein AtlasENSG00000101773
HPRD04990
IPIIPI00480111   IPI00304023   IPI00402159   
Protein Interaction databases
DIP (DOE-UCLA)Q99708
IntAct (EBI)Q99708
FunCoupENSG00000101773
REACTOMERBBP8
BioGRIDRBBP8
InParanoidQ99708
Interologous Interaction database Q99708
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RBBP8
SNP (GeneSNP Utah)RBBP8
SNP : HGBaseRBBP8
Genetic variants : HAPMAPRBBP8
Somatic Mutations in Cancer : COSMICRBBP8 
CONAN: Copy Number AnalysisRBBP8 
Mutations and Diseases : HGMDRBBP8
OMIM251255    604124    606744   
GENETests251255    604124    606744   
Disease Genetic AssociationRBBP8
Huge Navigator RBBP8 [HugePedia]  RBBP8 [HugeCancerGEM]
Genomic VariantsRBBP8
snp3D : Map Gene to Disease5932
General knowledge
Homologs : HomoloGeneRBBP8
Homology/Alignments : Family Browser (UCSC)RBBP8
Phylogenetic Trees/Animal Genes : TreeFamRBBP8
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.- [ Enzyme-SRS ]   3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
Chemical/Protein Interactions : CTD5932
Chemical/Pharm GKB GenePA34255
Clinical trialRBBP8
Cancer Resource (Charite)ENSG00000101773
Ontology : AmiGOsingle-stranded DNA specific endodeoxyribonuclease activity  cell cycle checkpoint  G1/S transition of mitotic cell cycle  negative regulation of transcription from RNA polymerase II promoter  RNA polymerase II repressing transcription factor binding  RNA polymerase II transcription corepressor activity  blastocyst hatching  damaged DNA binding  endonuclease activity  protein binding  nucleus  DNA repair  regulation of transcription from RNA polymerase II promoter  meiosis  DNA double-strand break processing involved in repair via single-strand annealing  hydrolase activity  transcriptional repressor complex  
Ontology : EGO-EBIsingle-stranded DNA specific endodeoxyribonuclease activity  cell cycle checkpoint  G1/S transition of mitotic cell cycle  negative regulation of transcription from RNA polymerase II promoter  RNA polymerase II repressing transcription factor binding  RNA polymerase II transcription corepressor activity  blastocyst hatching  damaged DNA binding  endonuclease activity  protein binding  nucleus  DNA repair  regulation of transcription from RNA polymerase II promoter  meiosis  DNA double-strand break processing involved in repair via single-strand annealing  hydrolase activity  transcriptional repressor complex  
Pathways : BIOCARTAATM Signaling Pathway [Genes]   
Other databases
Probes
Probes : ImagenesRBBP8 Related clones (RZPD - Berlin)
Litterature
PubMed64 Pubmed reference(s) in Entrez
PubGeneRBBP8
iHOPRBBP8

Bibliography

Molecular cloning and characterization of a novel retinoblastoma-binding protein.
Fusco C, Reymond A, Zervos AS.
Genomics. 1998 Aug 1;51(3):351-8.
PMID 9721205
 
Interaction between a cellular protein that binds to the C-terminal region of adenovirus E1A (CtBP) and a novel cellular protein is disrupted by E1A through a conserved PLDLS motif.
Schaeper U, Subramanian T, Lim L, Boyd JM, Chinnadurai G.
J Biol Chem. 1998 Apr 10;273(15):8549-52.
PMID 9535825
 
Characterization of a carboxy-terminal BRCA1 interacting protein.
Wong AK, Ormonde PA, Pero R, Chen Y, Lian L, Salada G, Berry S, Lawrence Q, Dayananth P, Ha P, Tavtigian SV, Teng DH, Bartel PL.
Oncogene. 1998 Nov 5;17(18):2279-85.
PMID 9811458
 
The C-terminal (BRCT) domains of BRCA1 interact in vivo with CtIP, a protein implicated in the CtBP pathway of transcriptional repression.
Yu X, Wu LC, Bowcock AM, Aronheim A, Baer R.
J Biol Chem. 1998 Sep 25;273(39):25388-92.
PMID 9738006
 
Binding of CtIP to the BRCT repeats of BRCA1 involved in the transcription regulation of p21 is disrupted upon DNA damage.
Li S, Chen PL, Subramanian T, Chinnadurai G, Tomlinson G, Osborne CK, Sharp ZD, Lee WH.
J Biol Chem. 1999 Apr 16;274(16):11334-8.
PMID 10196224
 
Nuclear localization and cell cycle-specific expression of CtIP, a protein that associates with the BRCA1 tumor suppressor.
Yu X, Baer R.
J Biol Chem. 2000 Jun 16;275(24):18541-9.
PMID 10764811
 
Inactivation of CtIP leads to early embryonic lethality mediated by G1 restraint and to tumorigenesis by haploid insufficiency.
Chen PL, Liu F, Cai S, Lin X, Li A, Chen Y, Gu B, Lee EY, Lee WH.
Mol Cell Biol. 2005 May;25(9):3535-42.
PMID 15831459
 
CtIP, a candidate tumor susceptibility gene is a team player with luminaries.
Chinnadurai G.
Biochim Biophys Acta. 2006 Jan;1765(1):67-73. Epub 2005 Oct 6.
PMID 16249056
 
Ctp1 is a cell-cycle-regulated protein that functions with Mre11 complex to control double-strand break repair by homologous recombination.
Limbo O, Chahwan C, Yamada Y, de Bruin RA, Wittenberg C, Russell P.
Mol Cell. 2007 Oct 12;28(1):134-46.
PMID 17936710
 
Human CtIP promotes DNA end resection.
Sartori AA, Lukas C, Coates J, Mistrik M, Fu S, Bartek J, Baer R, Lukas J, Jackson SP.
Nature. 2007 Nov 22;450(7169):509-14. Epub 2007 Oct 28.
PMID 17965729
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2008Govindaswamy Chinnadurai, Thirugnana Subramanian, Selvamani Vijayalingam
Institute for Molecular, Virology, Saint Louis University School of Medicine, Doisy Research Center, 1100 South Grand Blvd, St. Louis, Missouri 63104, USA

Citation

This paper should be referenced as such :
Chinnadurai G, Subramanian T, Vijayalingam S . RBBP8 (retinoblastoma binding protein 8). Atlas Genet Cytogenet Oncol Haematol. May 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/RBBP8ID42066ch18q11.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/44451/1/05-2008-RBBP8ID42066ch18q11.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:02:48 CEST 2012

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