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RUNX 2 (Runt-related transcription factor 2)

Identity

Other namesPEBP2-ALPHA-A
OSF2
AML3
CBFA1
Hugo RUNX2
Location 6p21

DNA/RNA

Description 124,63 kb, 8 Exon at least.
Transcription The transcription of the RUNX2 gene is regulated by two different promoters. The larger P1 transcript gives rise to a protein starting with the amino acid sequence MASNS (Runx2-type II or OSF2/CBFA1a, 521 amino acids), whereas the P2 gives rise to a protein starting with MRIPV (Runx2-type I or isoform c, 507 amino acids). Transcript variants of this protein have been reported as well due to alternative splicing.

Protein

Description Runx2 is a transcription factor belonging to Runx family. This family is characterized by a highly conserved region of 128 amino acids, termed the Runt domain. The Runt domain is responsible for DNA binding and heterodimerization with CBFB (PEBP2b), which increases its DNA-binding affinity and also stabilizes RUNX proteins against proteolytic degradation. The C-terminal portion is rich in proline, serine and threonine (PST region) and contains functional domains acting to regulate transcription.
Expression Runx2 expression is largely restricted to osteoblasts and mesenchymal condensations forming bones, cartilages and teeth.
Localisation Nuclear
Function Runx2 is an osteoblast-specific transcription factor that plays a central role in osteoblast differentiation, chondrocyte maturation, bone formation and remodeling. Moreover, it is a key target of mechanical signals that affect bone biology.
Homology RUNX family.

Mutations

Note Heterozygous mutations (frameshift, nonsense, missense, splicing mutations) of the Runx2 gene have been identified in patients with Cleidocranial dysplasia (CCD).

Implicated in

Entity Cleidocranial Dysplasia (CCD)
Disease CCD is a dominantly inherited autosomal skeletal disorder that is characterized by open sutures and delayed closure of sutures, hypoplastic or aplastic clavicles, short stature, large fontanelles, dental anomalies and delayed skeletal development.
Prognosis CCD does not affect life expectancy and most diagnosed persons enjoy good overall health. There is no specific treatment for CCD and the dental problems are the most significant complications.
  
Entity Lymphomas
Disease Runx2 and MYC collaborate in lymphoma development by suppressing apoptotic and growth arrest pathways in vivo.
  
Entity Multiple myeloma.
Disease Human myeloma cells express the bone regulating gene Runx2 and produce osteopontin that is involved in angiogenesis in multiple myeloma patients.
  
Entity Metastatic properties of cancer cells.
Disease Runx2 control multiple genes that contribute to the metastatic properties of cancer cells and their activity in the bone microenvironment.
  
Entity Breast cancer.
Disease Involvement of Runx2 transcription factors in breast cancer cells.
  
Entity Malignant melanoma.
Disease Coexpression of bone sialoprotein and Runx2, in malignant melanoma.
  
Entity Prostate cancer.
Disease Prostate cancer expression of runt-domain transcription factor Runx2.
  

External links

Nomenclature
HugoRUNX2
GDBRUNX2
Entrez_GeneRUNX2  860  runt-related transcription factor 2
Cards
AtlasRUNX2ID42183ch6p21
GeneCardsRUNX2
EnsemblRUNX2 [Search_View]   ENSG00000124813 [Gene_View]
GenatlasRUNX2
GeneLynxRUNX2
eGenomeRUNX2
euGene860
Genomic and cartography
GoldenPathRUNX2  -  6p21   chr6:45404032-45626796 +  6p21   [Description]    (hg18-Mar_2006)
EnsemblRUNX2 - 6p21 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneRUNX2
Gene and transcription
GenbankAF053952 [ ENTREZ ]
GenbankAF087960 [ ENTREZ ]
GenbankAL353944 [ ENTREZ ]
GenbankBC108919 [ ENTREZ ]
GenbankBC108920 [ ENTREZ ]
RefSeqNM_001015051 [ SRS ]    NM_001015051 [ ENTREZ ]
RefSeqNM_001024630 [ SRS ]    NM_001024630 [ ENTREZ ]
RefSeqNM_004348 [ SRS ]    NM_004348 [ ENTREZ ]
RefSeqAC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeqNC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeqNT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeqNW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceViewRUNX2 AceView - NCBI
UnigeneHs.535845 [ SRS ]    Hs.535845 [ NCBI ]     HS535845 [ spliceNest ]
Fast-db12627 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ13950 [ SRS]    Q13950 [ EXPASY ]     Q13950 [ INTERPRO ]
PrositePS51062 RUNT [ SRS ]    PS51062 RUNT [ Expasy ]
InterproIPR013524 AML1/Runt_N [ SRS ]    IPR013524 AML1/Runt_N [ EBI ]
InterproIPR000040 AML1_Runt [ SRS ]    IPR000040 AML1_Runt [ EBI ]
InterproIPR012346 p53_RUNT_DNA_bd [ SRS ]    IPR012346 p53_RUNT_DNA_bd [ EBI ]
InterproIPR013711 RunxI [ SRS ]    IPR013711 RunxI [ EBI ]
CluSTrQ13950
PfamPF00853 Runt [ SRS ]    PF00853 Runt [ Sanger ]    pfam00853 [ NCBI-CDD ]
PfamPF08504 RunxI [ SRS ]    PF08504 RunxI [ Sanger ]    pfam08504 [ NCBI-CDD ]
BlocksQ13950
HPRD02566
Protein Interaction databases
DIPQ13950
IntActQ13950
Polymorphism : SNP, mutations, diseases
OMIM119600;600211    [ map ]   
GENECLINICS119600;600211
SNPRUNX2 [dbSNP-NCBI]  
SNPNM_001015051 [SNP-NCI]  
SNPNM_001024630 [SNP-NCI]  
SNPNM_004348 [SNP-NCI]  
SNPRUNX2 [GeneSNPs - Utah]  RUNX2] [HGBASE - SRS]
HAPMAPRUNX2 [HAPMAP]  
COSMICRUNX2 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDRUNX2
General knowledge
Family BrowserRUNX2 [UCSC Family Browser]
SOURCENM_001015051
SOURCENM_001024630
SOURCENM_004348
SMDHs.535845
SAGEHs.535845
GOosteoblast differentiation [Amigo]  osteoblast differentiation
GOtranscription factor activity [Amigo]  transcription factor activity
GOtranscription factor activity [Amigo]  transcription factor activity
GORNA polymerase II transcription factor activity [Amigo]  RNA polymerase II transcription factor activity
GOprotein binding [Amigo]  protein binding
GOATP binding [Amigo]  ATP binding
GOnucleus [Amigo]  nucleus
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOnegative regulation of transcription [Amigo]  negative regulation of transcription
GOtranscription activator activity [Amigo]  transcription activator activity
PubGeneRUNX2
TreeFamRUNX2
CTD860 [Comparative ToxicoGenomics Database]
Other databases
Other databasehttp://www.nlm.nih.gov/medlineplus/ency/article/001589.htm
Other databasehttp://www.rarediseases.org/search/rdbdetail_abstract.html?disname=Cleidocranial+Dysplasia
Other databasehttp://www.gfmer.ch/genetic_diseases_v2/gendis_detail_list.php?cat3=66
Probes
ProbeRUNX2 Related clones (RZPD - Berlin)
PubMed
PubMed114 Pubmed reference(s) in LocusLink

Bibliography

Osf2/Cbfa1: a transcriptional activator of osteoblast differentiation.
Ducy P, Zhang R, Geoffroy V, Ridall AL, Karsenty G
Cell. 1997 ; 89 (5) : 747-754.
PMID 9182762
 
Targeted disruption of Cbfa1 results in a complete lack of bone formation owing to maturational arrest of osteoblasts.
Komori T, Yagi H, Nomura S, Yamaguchi A, Sasaki K, Deguchi K, Shimizu Y, Bronson RT, Gao YH, Inada M, Sato M, Okamoto R, Kitamura Y, Yoshiki S, Kishimoto T
Cell. 1997 ; 89 (5) : 755-764.
PMID 9182763
 
Missense mutations abolishing DNA binding of the osteoblast-specific transcription factor OSF2/CBFA1 in cleidocranial dysplasia.
Lee B, Thirunavukkarasu K, Zhou L, Pastore L, Baldini A, Hecht J, Geoffroy V, Ducy P, Karsenty G
Nature genetics. 1997 ; 16 (3) : 307-310.
PMID 9207800
 
Mutations involving the transcription factor CBFA1 cause cleidocranial dysplasia.
Mundlos S, Otto F, Mundlos C, Mulliken JB, Aylsworth AS, Albright S, Lindhout D, Cole WG, Henn W, Knoll JH, Owen MJ, Mertelsmann R, Zabel BU, Olsen BR
Cell. 1997 ; 89 (5) : 773-779.
PMID 9182765
 
Cbfa1, a candidate gene for cleidocranial dysplasia syndrome, is essential for osteoblast differentiation and bone development.
Otto F, Thornell AP, Crompton T, Denzel A, Gilmour KC, Rosewell IR, Stamp GW, Beddington RS, Mundlos S, Olsen BR, Selby PB, Owen MJ
Cell. 1997 ; 89 (5) : 765-771.
PMID 9182764
 
Genomic organization, expression of the human CBFA1 gene, and evidence for an alternative splicing event affecting protein function.
Geoffroy V, Corral DA, Zhou L, Lee B, Karsenty G
Mammalian genome : official journal of the International Mammalian Genome Society. 1998 ; 9 (1) : 54-57.
PMID 9434946
 
A natural history of cleidocranial dysplasia.
Cooper SC, Flaitz CM, Johnston DA, Lee B, Hecht JT
American journal of medical genetics. 2001 ; 104 (1) : 1-6.
PMID 11746020
 
RUNX: a trilogy of cancer genes.
Lund AH, van Lohuizen M
Cancer cell. 2002 ; 1 (3) : 213-215.
PMID 12086855
 
The bone-specific transcriptional regulator Cbfa1 is a target of mechanical signals in osteoblastic cells.
Ziros PG, Gil AP, Georgakopoulos T, Habeos I, Kletsas D, Basdra EK, Papavassiliou AG
The Journal of biological chemistry. 2002 ; 277 (26) : 23934-23941.
PMID 11960980
 
Osteoblast-related transcription factors Runx2 (Cbfa1/AML3) and MSX2 mediate the expression of bone sialoprotein in human metastatic breast cancer cells.
Barnes GL, Javed A, Waller SM, Kamal MH, Hebert KE, Hassan MQ, Bellahcene A, Van Wijnen AJ, Young MF, Lian JB, Stein GS, Gerstenfeld LC
Cancer research. 2003 ; 63 (10) : 2631-2637.
PMID 12750290
 
Oncogenic potential of the RUNX gene family: 'overview'.
Ito Y
Oncogene. 2004 ; 23 (24) : 4198-4208.
PMID 15156173
 
Impaired intranuclear trafficking of Runx2 (AML3/CBFA1) transcription factors in breast cancer cells inhibits osteolysis in vivo.
Javed A, Barnes GL, Pratap J, Antkowiak T, Gerstenfeld LC, van Wijnen AJ, Stein JL, Lian JB, Stein GS
Proceedings of the National Academy of Sciences of the United States of America. 2005 ; 102 (5) : 1454-1459.
PMID 15665096
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written12-2006Athanasios G Papavassiliou, Panos Ziros

Citation

This paper should be referenced as such :
Papavassiliou AG, Ziros P . RUNX 2 (Runt-related transcription factor 2). Atlas Genet Cytogenet Oncol Haematol. December 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/RUNX2ID42183ch6p21.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:26:54 2008


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