Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SDHC (succinate dehydrogenase complex II, subunit C, integral membrane protein)

Identity

Other namesSDH3 (succinate dehydrogenase 3)
HGNC SDHC
Location 1q21
Location_base_pair Starts at 159550790 and ends at 159601159 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description 1180 bp, 6 exons

Protein

Description 169 amino acids and 15.5 kDa
Expression widely expressed
Localisation mitochondrial inner membrane
Function Complex II (succinate-ubiquinone oxidoreductase) of the respiratory chain is involved in the oxidation of succinate, carries electrons from FADH to CoQ. It is composed of four nuclear-encoded subunits. The subunit C protein or large subunit (cybL) is one of two integral membrane proteins anchoring the complex to membrane.
Homology The complex II includes SDHD (cybS) and SDHB (iron-sulfur protein) which are also implicated in paragangliomas and pheochromocytomas.

Mutations

Germinal Germline mutations cause hereditary paraganglioma. At this time, an unique mutation which destroyed the initial site of traduction (ATG, start codon) of SDHC gene has been reported in a family with a hereditary paraganglioma.
Somatic Loss of wild type allele in tumor DNA is usually observed.

Implicated in

Entity Hereditary paraganglioma type 3
Note Alias: Familial non chromaffin paragangliomas 3; Familial glomus tumor
Disease Hereditary paraganglioma type 3 (PGL3) is a rare autosomal dominant disorder non maternally imprinted. Paragangliomas are slow growing highly vascular tumor, usually benign, derived from crest-neural cells. They are preferentially located in the neck (carotid body and glomus vagal) and head (glomus jugulare and tympanicum).
Prognosis It depends on extent of the disease at the time of diagnosis.
  

External links

Nomenclature
HGNCSDHC   10682
Entrez_GeneSDHC  6391  succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa
Cards
AtlasSDHCID389
GeneCardsSDHC
EnsemblSDHC [Search_View]   ENSG00000143252 [Gene_View]  SDHC [Vega]
GenatlasSDHC
GeneLynxSDHC
eGenomeSDHC
euGene6391
Genomic and cartography
GoldenPathSDHC  -  1q21   chr1:159550790-159601159 +  1q21   [Description]    (hg18-Mar_2006)
EnsemblSDHC - 1q21 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneSDHC
Gene and transcription
GenbankAB201252 [ ENTREZ ]
GenbankAB211234 [ ENTREZ ]
GenbankAB211235 [ ENTREZ ]
GenbankAB212048 [ ENTREZ ]
GenbankAK131051 [ ENTREZ ]
RefSeqNM_001035511 [ SRS ]    NM_001035511 [ ENTREZ ]
RefSeqNM_001035512 [ SRS ]    NM_001035512 [ ENTREZ ]
RefSeqNM_001035513 [ SRS ]    NM_001035513 [ ENTREZ ]
RefSeqNM_003001 [ SRS ]    NM_003001 [ ENTREZ ]
RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeqAC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeqNG_008055 [ SRS ]    NG_008055 [ ENTREZ ]
RefSeqNT_004487 [ SRS ]    NT_004487 [ ENTREZ ]
RefSeqNW_001838531 [ SRS ]    NW_001838531 [ ENTREZ ]
RefSeqNW_925683 [ SRS ]    NW_925683 [ ENTREZ ]
CCDSSDHC CCDS - NCBI
AceViewSDHC AceView - NCBI
UnigeneHs.444472 [ SRS ]    Hs.444472 [ NCBI ]     HS444472 [ spliceNest ]
Fast-db17495 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO75609 [ SRS]    O75609 [ EXPASY ]     O75609 [ INTERPRO ]     O75609 [ UNIPROT ] O75609 [ VarSplice ]
PrositePS01001 SDH_CYT_2 [ SRS ]    PS01001 SDH_CYT_2 [ Expasy ]
InterproIPR000701 Succ_DHase_cyt_bsu [ SRS ]    IPR000701 Succ_DHase_cyt_bsu [ EBI ]
InterproIPR014314 Succ_DHase_cytb556 [ SRS ]    IPR014314 Succ_DHase_cytb556 [ EBI ]
InterproIPR014361 Succ_DHase_cytb560 [ SRS ]    IPR014361 Succ_DHase_cytb560 [ EBI ]
CluSTrO75609
PfamPF01127 Sdh_cyt [ SRS ]    PF01127 Sdh_cyt [ Sanger ]    pfam01127 [ NCBI-CDD ]
BlocksO75609
HPRD03878
Protein Interaction databases
DIPO75609
IntActO75609
Polymorphism : SNP, mutations, diseases
OMIM602413;605373;606864    [ map ]   
GENECLINICS602413;605373;606864
SNPSDHC [dbSNP-NCBI]  
SNPNM_001035511 [SNP-NCI]  
SNPNM_001035512 [SNP-NCI]  
SNPNM_001035513 [SNP-NCI]  
SNPNM_003001 [SNP-NCI]  
SNPSDHC [GeneSNPs - Utah]  SDHC] [HGBASE - SRS]
HAPMAPSDHC [HAPMAP]  
COSMICSDHC [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDSDHC
Genetic AssociationSDHC
CDC HuGESDHC
General knowledge
Family BrowserSDHC [UCSC Family Browser]
SOURCENM_001035511
SOURCENM_001035512
SOURCENM_001035513
SOURCENM_003001
SMDHs.444472
SAGEHs.444472
GOsuccinate dehydrogenase activity [Amigo]  succinate dehydrogenase activity
GOiron ion binding [Amigo]  iron ion binding
GOmitochondrion [Amigo]  mitochondrion
GOmitochondrial inner membrane [Amigo]  mitochondrial inner membrane
GOmitochondrial inner membrane [Amigo]  mitochondrial inner membrane
GOtricarboxylic acid cycle [Amigo]  tricarboxylic acid cycle
GOtricarboxylic acid cycle [Amigo]  tricarboxylic acid cycle
GOtransport [Amigo]  transport
GOelectron carrier activity [Amigo]  electron carrier activity
GOmembrane [Amigo]  membrane
GOintegral to membrane [Amigo]  integral to membrane
GOrespiratory chain complex II [Amigo]  respiratory chain complex II
GOmetal ion binding [Amigo]  metal ion binding
GOoxidation reduction [Amigo]  oxidation reduction
KEGGCitrate cycle (TCA cycle)
KEGGOxidative phosphorylation
PubGeneSDHC
TreeFamSDHC
CTD6391 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeSDHC Related clones (RZPD - Berlin)
PubMed
PubMed22 Pubmed reference(s) in Entrez

Bibliography

Cytochrome b in human complex II (succinate-ubiquinone oxidoreductase): cDNA cloning of the components in liver mitochondria and chromosome assignment of the genes for the large (SDHC) and small (SDHD) subunits to 1q21 and 11q23.
Hirawake H, Taniwaki M, Tamura A, Kojima S, Kita K
Cytogenetics and cell genetics. 1997 ; 79 (1-2) : 132-138.
PMID 9533030
 
Characterization of the human SDHC gene encoding of the integral membrane proteins of succinate-quinone oxidoreductase in mitochondria.
Elbehti-Green A, Au HC, Mascarello JT, Ream-Robinson D, Scheffler IE
Gene. 1998 ; 213 (1-2) : 133-140.
PMID 9714607
 
Mutations in SDHC cause autosomal dominant paraganglioma, type 3.
Niemann S, Mˆºller U
Nature genetics. 2000 ; 26 (3) : 268-270.
PMID 11062460
 
Assignment of PGL3 to chromosome 1 (q21-q23) in a family with autosomal dominant non-chromaffin paraganglioma.
Niemann S, Becker-Follmann J, Nˆºrnberg G, Rˆºschendorf F, Sieweke N, Hˆºgens-Penzel M, Traupe H, Wienker TF, Reis A, Mˆºller U
American journal of medical genetics. 2001 ; 98 (1) : 32-36.
PMID 11426453
 
Prevalence of SDHB, SDHC, and SDHD germline mutations in clinic patients with head and neck paragangliomas.
Baysal BE, Willett-Brozick JE, Lawrence EC, Drovdlic CM, Savul SA, McLeod DR, Yee HA, Brackmann DE, Slattery WH 3rd, Myers EN, Ferrell RE, Rubinstein WS
Journal of medical genetics. 2002 ; 39 (3) : 178-183.
PMID 11897817
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written04-2002Anne-Paule Gimenez-Roqueplo

Citation

This paper should be referenced as such :
Gimenez-Roqueplo AP . SDHC (succinate dehydrogenase complex II, subunit C, integral membrane protein). Atlas Genet Cytogenet Oncol Haematol. April 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/SDHCID389.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Nov 9 19:47:25 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.