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SEPT2 (septin 2)

Identity

Other namesKIAA0158
hNedd5
Pnutl3
HGNC SEPT2
Location 2q37.3

DNA/RNA

 
  Genomic structure of published SEPT2 alternatively spliced transcripts. Boxes indicate exons with coding regions in red. Exons are tentatively positioned in relative genomic order with overlapping exons indicating identical sequences.
Description The SEPT2 gene has 14 exons.
Transcription SEPT2 has four types of transcripts with 3.6 kb, 3.5 kb, 3.4 kb and 3.3 kb encoding the same protein, as a result of alternative splicing.

Protein

 
  The SEPT2 protein showing the localization of the three function-defining domains: a P loop-based GTP-binding domain flanked by a polybasic domain and the coiled-coil-region.
Description SEPT2 belongs to an evolutionarily conserved family of genes that encode a P loop-based GTP-binding domain flanked by a polybasic domain and (usually) a coiled-coil region, and assemble into homo- and hetero-oligomers and filaments with key roles in cell division cytoskeletal dynamics and secretion. The SEPT2 gene codes for a protein with 361 amino acids and a molecular weight of 41.5 kDa.
Expression SEPT2 was identified as a gene expressed in early embryonic mouse brain and down-regulated during development. It is ubiquitously expressed in cell lines and tissues with the highest protein levels found in brain tissue.
Localisation The SEPT2 protein, like other septin family members, is thought to be cytoplasmic. SEPT2 co-localises with actin filaments in interphase cells, and in dividing cells concentrates at the cleavage furrow.
Function SEPT2 is a multifunctional protein that was shown to be required for cytokinesis and to bind actin and associate with focal adhesions. Recent data support the idea that SEPT2 can have a role in chromosome congression and segregation. Additional functions have also been suggested; for instance, in rat brain lysates SEPT2 is part of a multi-septin complex that interacts with the exocyst complex, which plays a role in secretion and neurite outgrowth. SEPT2 has also been localised to senile plaques of brains in patients with Alzheimer's disease suggesting a role in neurodegeneration.
Homology The SEPT2 protein belongs to an evolutionarily family of proteins with at least 14 members and shares a very high homology with septin 1, septin 4 and septin 5.

Implicated in

Entity Acute myeloid leukemia
Disease Therapy-related AML-M2 and AML-M4
Prognosis To date, the prognosis of acute leukaemia patients with the MLL-SEPT2 fusion is not known.
Cytogenetics t(2;11)(q37;q23)
 
Schematic representation of the known MLL-SEPT6 genomic breakpoints as a result of the t(2;11)(q37;q23) translocation. To date, two different fusions between MLL and SEPT2 have been reported:
A: MLL intron 6 fused with SEPT2 intron 2, and
B: MLL intron 7 fused with SEPT2 intron 2.
Hybrid/Mutated Gene MLL­SEPT2. MLL exon 6 or 7 fused with SEPT2 exon 3.
Abnormal Protein The N-terminal region of the MLL protein, including the AT hook, SNL-1, SNL-2 and DNA methyltransferase domains, is fused to almost the entire open-reading frame of SEPT2, containing all the three septin function-defining domains, except for the first three aminoacids. So far, no studies regarding the MLL-SEPT2 localization and function in the leukemic cell were performed.
 
Structure of the normal MLL and SEPT2 proteins and the resulting MLL-SEPT2 fusion protein.
Oncogenesis Although the presently available data suggest that the involvement of septins in MLL-related leukemia is only related to their capacity to oligomerize, there is some evidence that altered expression of SEPT2 may underlie the development of aneuploidy.
  

External links

Nomenclature
HGNCSEPT2   7729
Entrez_GeneSEPT2  4735  septin 2
Cards
AtlasSEPT2ID44125ch2q37
GeneCardsSEPT2
EnsemblSEPT2 [Search_View]   ENSG00000168385 [Gene_View]
GenatlasSEPT2
GeneLynxSEPT2
eGenomeSEPT2
euGene4735
Genomic and cartography
GoldenPathSEPT2  -  2q37.3   chr2:241903396-241942114 +  2q37.3   [Description]    (hg18-Mar_2006)
EnsemblSEPT2 - 2q37.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneSEPT2
Gene and transcription
GenbankAF038404 [ ENTREZ ]
GenbankBC014455 [ ENTREZ ]
GenbankBC033559 [ ENTREZ ]
GenbankBC040676 [ ENTREZ ]
GenbankBC043180 [ ENTREZ ]
RefSeqNM_001008491 [ SRS ]    NM_001008491 [ ENTREZ ]
RefSeqNM_001008492 [ SRS ]    NM_001008492 [ ENTREZ ]
RefSeqNM_004404 [ SRS ]    NM_004404 [ ENTREZ ]
RefSeqNM_006155 [ SRS ]    NM_006155 [ ENTREZ ]
RefSeqAC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeqAC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeqNC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeqNT_005416 [ SRS ]    NT_005416 [ ENTREZ ]
RefSeqNW_001838874 [ SRS ]    NW_001838874 [ ENTREZ ]
RefSeqNW_921618 [ SRS ]    NW_921618 [ ENTREZ ]
AceViewSEPT2 AceView - NCBI
UnigeneHs.712657 [ SRS ]    Hs.712657 [ NCBI ]     HS712657 [ spliceNest ]
Fast-db16229 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ15019 [ SRS]    Q15019 [ EXPASY ]     Q15019 [ INTERPRO ]     Q15019 [ UNIPROT ]
InterproIPR000038 Cell_Div_GTP_bd [ SRS ]    IPR000038 Cell_Div_GTP_bd [ EBI ]
InterproIPR016491 Septin [ SRS ]    IPR016491 Septin [ EBI ]
InterproIPR008113 Septin2 [ SRS ]    IPR008113 Septin2 [ EBI ]
CluSTrQ15019
PfamPF00735 Septin [ SRS ]    PF00735 Septin [ Sanger ]    pfam00735 [ NCBI-CDD ]
ProdomPD002565 GTP_Cell_Div[INRA-Toulouse]
ProdomQ15019 SEPT2_HUMAN [ Domain structure ]   Q15019 SEPT2_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ15019
PDB2QA5 [ SRS ]    2QA5 [ PdbSum ],   2QA5 [ IMB ]   2QA5 [ RSDB ]
PDB2QAG [ SRS ]    2QAG [ PdbSum ],   2QAG [ IMB ]   2QAG [ RSDB ]
PDB2QNR [ SRS ]    2QNR [ PdbSum ],   2QNR [ IMB ]   2QNR [ RSDB ]
HPRD03297
Protein Interaction databases
DIPQ15019
IntActQ15019
Polymorphism : SNP, mutations, diseases
OMIM601506    [ map ]   
GENECLINICS601506
SNPSEPT2 [dbSNP-NCBI]  
SNPNM_001008491 [SNP-NCI]  
SNPNM_001008492 [SNP-NCI]  
SNPNM_004404 [SNP-NCI]  
SNPNM_006155 [SNP-NCI]  
SNPSEPT2 [GeneSNPs - Utah]  SEPT2] [HGBASE - SRS]
HAPMAPSEPT2 [HAPMAP]  
TICdbSEPT2 [Translocation breakpoints In Cancer]  
HGMDSEPT2
General knowledge
Family BrowserSEPT2 [UCSC Family Browser]
SOURCENM_001008491
SOURCENM_001008492
SOURCENM_004404
SOURCENM_006155
SMDHs.712657
SAGEHs.712657
GOnucleotide binding [Amigo]  nucleotide binding
GOprotein binding [Amigo]  protein binding
GOprotein binding [Amigo]  protein binding
GOGTP binding [Amigo]  GTP binding
GOnucleus [Amigo]  nucleus
GOcytoplasm [Amigo]  cytoplasm
GOcell cycle [Amigo]  cell cycle
GOseptin complex [Amigo]  septin complex
GOcell division [Amigo]  cell division
PubGeneSEPT2
TreeFamSEPT2
CTD4735 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeSEPT2 Related clones (RZPD - Berlin)
PubMed
PubMed32 Pubmed reference(s) in Entrez

Bibliography

Identification of septins in neurofibrillary tangles in Alzheimer's disease.
Kinoshita A, Kinoshita M, Akiyama H, Tomimoto H, Akiguchi I, Kumar S, Noda M, Kimura J
The American journal of pathology. 1998 ; 153 (5) : 1551-1560.
PMID 9811347
 
The pathobiology of the septin gene family.
Hall PA, Russell SE
The Journal of pathology. 2004 ; 204 (4) : 489-505.
PMID 15495264
 
Expression profiling the human septin gene family.
Hall PA, Jung K, Hillan KJ, Russell SE
The Journal of pathology. 2005 ; 206 (3) : 269-278.
PMID 15915442
 
A mitotic septin scaffold required for Mammalian chromosome congression and segregation.
Spiliotis ET, Kinoshita M, Nelson WJ
Science (New York, N.Y.). 2005 ; 307 (5716) : 1781-1785.
PMID 15774761
 
SEPT2 is a new fusion partner of MLL in acute myeloid leukemia with t(2;11)(q37;q23).
Cerveira N, Correia C, Bizarro S, Pinto C, Lisboa S, Mariz JM, Marques M, Teixeira MR
Oncogene. 2006 ; 25 (45) : 6147-6152.
PMID 16682951
 
A new subtype of MLL-SEPT2 fusion transcript in therapy-related acute myeloid leukemia with t(2;11)(q37;q23): a case report and literature review.
van Binsbergen E, de Weerdt O, Buijs A
Cancer genetics and cytogenetics. 2007 ; 176 (1) : 72-75.
PMID 17574968
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2007Nuno Cerveira, Manuel R Teixeira
Department of Genetics, Portuguese Oncology Institute, Rua Dr. Antonio Bernardino de Almeida, 4200-072 Porto, Portugal (MRT)

Citation

This paper should be referenced as such :
Cerveira N, Teixeira MR . SEPT2 (septin 2). Atlas Genet Cytogenet Oncol Haematol. September 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/SEPT2ID44125ch2q37.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 29 18:46:18 2008


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