Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SIL

Identity

Other namesTAL1 (SCL) interrupting locus
HGNC STIL
Location 1p32
Local_order UMP-CMPK (47511608-47556531);SIL (47427869-47491842); TAL1 (47393984-47407363)
Note 47,427,869 bp from pter; End: 47,491,842 bp from pter; Size: 63,973 bases; Orientation: minus strand

DNA/RNA

 
  Genomic structure of SIL. EcoRI sites (R) are indicated. Exons are as shown; the smaller exons are not drawn to scale.
Description 18 exons distributed over 70 kb. 5' portion of the gene demonstrating alternate exon utilization.

Protein

Description 1287 amino acids, 148KDa protein which is highly conserved in vertebrates only. No homologies to known protein motifs except for conserved Serin/Threonine phosporylation sites.
Expression SIL is an immediate early gene, with ubiquitous expression in proliferating cells and during early embryonic development. SIL protein levels peak during mitosis and are degraded on transition to G1. SIL is phosphorylated in mitosis. It is expressed in multiple cancers. In lung cancer its expression correlates with the expression of mitotic checkpoint genes
Localisation Cytosolic protein
Function SIL knockout mouse embryos die in utero displaying holopresencephaly, randomized left/right asymmetry and marked apoptosis of the neural folds. Genetic evidence showed that SIL is required for the Sonic Hedgehog response pathway. SIL phosphorylation and interactions with PIN1 is required for maintenance of the mitotic checkpoint.
Homology There is no homology to other known proteins.

Mutations

Note No mutations were found in families with hereditary holoprosencephaly.

Implicated in

Entity SIL-TAL1(SCL) fusion.
Note A submicroscopic deletions fuses the promoter of SIL to TAL1 to induce an abnormal expression of TAL1.
Disease T-cell ALL. This TAL1-SIL fusion transcript is found in approximately 25% of T-ALL patients.
Cytogenetics Normal karyotype.
 
Schematic representation of SIL/SCL fusion mRNA. The germ line SIL (solid boxes) and SCL (open boxes) genomic structures are shown. The deletion breakpoints are indicated with arrows. The SIL/SCL genomic rearrangement is indicated below. The SIL/SCL fusion mRNA is formed by SIL exon 1 (solid box) splicing to SCL exon 3 (open box) in a head-to-tail fashion.
Hybrid/Mutated Gene the promoter region of the SCL gene, a hematopoietic transcription factor, and the coding region of the SIL gene are deleted. The molecular result of this SIL/SCL rearrangement is an interstitial deletion on chromosome 1 that juxtaposes the 5' portion of the SIL gene to the coding region of the SCL gene. A SIL/SCL fusion mRNA is produced, with SIL exon 1 splicing to SCL exon 3 in a head-to-tail fashion. Because these are both 5' untranslated region (UTR) exons, the net result is that SIL promoter and enhancer elements drive the expression of a full length SCL gene product.
  
Entity SIL overexpression in lung cancer.
Note SIL is also overexpressed in various solid tumors (melanoma, lymphoma, ovary cancer, breast cancer colon cancer lung and prostate cancer) and leukemic cell lines (Dami-acute megakaryocytic, and K562- erythroid blast crisis of chronic myeloid leukemia).
Disease High expression in non- small cell lung cancer (NSCLC). In addition, high expression levels in lung adenocarcinoma, lung squamous carcinoma and lung small cell carcinoma.
Prognosis SIL expression is associated with cell proliferation. In lung cancer, SIL overexpression is correlated with high mitotic activity.
  

External links

Nomenclature
HGNCSTIL   10879
Entrez_GeneSTIL  6491  SCL/TAL1 interrupting locus
Cards
AtlasSILID524ch1p32
GeneCardsSTIL
EnsemblSTIL [Search_View]   ENSG00000123473 [Gene_View]
GenatlasSTIL
GeneLynxSTIL
eGenomeSTIL
euGene6491
Genomic and cartography
GoldenPathSTIL  -  1p32   chr1:47488398-47552406 -  1p32   [Description]    (hg18-Mar_2006)
EnsemblSTIL - 1p32 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneSTIL
Gene and transcription
GenbankAA897748 [ ENTREZ ]
GenbankAK098445 [ ENTREZ ]
GenbankAK128406 [ ENTREZ ]
GenbankAK307519 [ ENTREZ ]
GenbankBC053615 [ ENTREZ ]
RefSeqNM_001048166 [ SRS ]    NM_001048166 [ ENTREZ ]
RefSeqNM_003035 [ SRS ]    NM_003035 [ ENTREZ ]
RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeqAC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeqNT_032977 [ SRS ]    NT_032977 [ ENTREZ ]
RefSeqNW_001838578 [ SRS ]    NW_001838578 [ ENTREZ ]
RefSeqNW_921351 [ SRS ]    NW_921351 [ ENTREZ ]
AceViewSTIL AceView - NCBI
UnigeneHs.525198 [ SRS ]    Hs.525198 [ NCBI ]     HS525198 [ spliceNest ]
Fast-db15898 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ15468 [ SRS]    Q15468 [ EXPASY ]     Q15468 [ INTERPRO ]     Q15468 [ UNIPROT ]
CluSTrQ15468
BlocksQ15468
HPRD01627
Protein Interaction databases
DIPQ15468
IntActQ15468
Polymorphism : SNP, mutations, diseases
OMIM181590    [ map ]   
GENECLINICS181590
SNPSTIL [dbSNP-NCBI]  
SNPNM_001048166 [SNP-NCI]  
SNPNM_003035 [SNP-NCI]  
SNPSTIL [GeneSNPs - Utah]  STIL] [HGBASE - SRS]
HAPMAPSTIL [HAPMAP]  
COSMICSTIL [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDSTIL
General knowledge
Family BrowserSTIL [UCSC Family Browser]
SOURCENM_001048166
SOURCENM_003035
SMDHs.525198
SAGEHs.525198
GOcytoplasm [Amigo]  cytoplasm
GOmulticellular organismal development [Amigo]  multicellular organismal development
GOcell proliferation [Amigo]  cell proliferation
PubGeneSTIL
TreeFamSTIL
CTD6491 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeSTIL Related clones (RZPD - Berlin)
PubMed
PubMed25 Pubmed reference(s) in LocusLink

Bibliography

Disruption of the human SCL locus by illegitimate V-(D)-J recombinase activity.
Aplan PD, Lombardi DP, Ginsberg AM, Cossman J, Bertness VL, Kirsch IR
Science (New York, N.Y.). 1990 ; 250 (4986) : 1426-1429.
PMID 2255914
 
Structural characterization of SIL, a gene frequently disrupted in T-cell acute lymphoblastic leukemia.
Aplan PD, Lombardi DP, Kirsch IR
Molecular and cellular biology. 1991 ; 11 (11) : 5462-5469.
PMID 1922059
 
Involvement of the putative hematopoietic transcription factor SCL in T-cell acute lymphoblastic leukemia.
Aplan PD, Lombardi DP, Reaman GH, Sather HN, Hammond GD, Kirsch IR
Blood. 1992 ; 79 (5) : 1327-1333.
PMID 1311214
 
Expression of the SIL gene is correlated with growth induction and cellular proliferation.
Izraeli S, Colaizzo-Anas T, Bertness VL, Mani K, Aplan PD, Kirsch IR
Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research. 1997 ; 8 (11) : 1171-1179.
PMID 9372240
 
The SIL gene is required for mouse embryonic axial development and left-right specification.
Izraeli S, Lowe LA, Bertness VL, Good DJ, Dorward DW, Kirsch IR, Kuehn MR
Nature. 1999 ; 399 (6737) : 691-694.
PMID 10385121
 
Genetic evidence that Sil is required for the Sonic Hedgehog response pathway.
Izraeli S, Lowe LA, Bertness VL, Campaner S, Hahn H, Kirsch IR, Kuehn MR
Genesis (New York, N.Y. : 2000). 2001 ; 31 (2) : 72-77.
PMID 11668681
 
Isolation and characterization of a human novel RAB (RAB39B) gene.
Cheng H, Ma Y, Ni X, Jiang M, Guo L, Ying K, Xie Y, Mao Y
Cytogenetic and genome research. 2002 ; 97 (1-2) : 72-75.
PMID 12438742
 
Cloning and characterization of the SIL promoter.
Colaizzo-Anas T, Aplan PD
Biochimica et biophysica acta. 2003 ; 1625 (2) : 207-213.
PMID 12531481
 
Sil overexpression in lung cancer characterizes tumors with increased mitotic activity.
Erez A, Perelman M, Hewitt SM, Cojacaru G, Goldberg I, Shahar I, Yaron P, Muler I, Campaner S, Amariglio N, Rechavi G, Kirsch IR, Krupsky M, Kaminski N, Izraeli S
Oncogene. 2004 ; 23 (31) : 5371-5377.
PMID 15107824
 
Sil phosphorylation in a Pin1 binding domain affects the duration of the spindle checkpoint.
Campaner S, Kaldis P, Izraeli S, Kirsch IR
Molecular and cellular biology. 2005 ; 25 (15) : 6660-6672.
PMID 16024801
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written10-2005Asher Castiel, Shai Izraeli
Pediatric Hemato-Oncology, Cancer Research Center, Sheba Medical Center, Tel-Hashomer, Ramat Gan, Israel 52621

Citation

This paper should be referenced as such :
Castiel A, Izraeli S . SIL. Atlas Genet Cytogenet Oncol Haematol. October 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/SILID524ch1p32.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:17:30 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.