Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCL1B (T-cell leukemia/lymphoma 1B)

Identity

Other namesTML1
HGNC TCL1B
Location 14q32.13
Local_order centromere - TCL6 (TNG1 and TNG2) - TCL1B - TCL1A - telomere

DNA/RNA

Description 6.5 kb TCL1B cDNA. 4 exons (181, 171, 69, 697 bp); centromere - exons 1 to 4 - telomere orientation; only the first three exons are coding. Located 15-16 kb centromeric of TCL1A.
Transcription TCL1B transcripts detected by RT-PCR or Northern blot in fetal tissues (liver, thymus, spleen, and kidney) and in testis, placenta, peripheral blood lymphocytes, kidney, tonsil, spleen, and bone marrow.
Pseudogene Localized to 5q12-5q13, lacks an initiating ATG and introns and has a stop codon in the middle of the ORF.

Protein

Description 15 kDa, 128 amino acid protein; one domain with a beta-barrel topology.
Expression Undefined
Localisation Undefined
Function Undefined in vivo but binds and coactivates AKT (protein kinase B) in vitro and in transfected cell lines.
Homology 30% identical to TCL1A, 60% similar to TCL1A
36% identical to MTCP1, 63% similar to MTCP1

Implicated in

Entity Expression in rare mature T cell leukemias carrying t(14;14)(q11;q32.1) causing a TCRalpha/delta-TCL1A/TCL1B translocation.
Expression in some Burkitt lymphoma cell lines.
Disease May be upregulated in T-cell prolymphocytic leukemia (T-PLL) with t(14;14)(q11;q32.1) and in Burkitt lymphoma
Oncogenesis TCL1 over expression by chromosomal rearrangement is a critical oncogenetic mechanism in T-PLL; a role for TCL1B over expression in oncogenesis is not yet shown.
  

External links

Nomenclature
HGNCTCL1B   11649
Entrez_GeneTCL1B  9623  T-cell leukemia/lymphoma 1B
Cards
AtlasTCL1BID354ch14q32
GeneCardsTCL1B
EnsemblTCL1B [Search_View]   ENSG00000213231 [Gene_View]
GenatlasTCL1B
GeneLynxTCL1B
eGenomeTCL1B
euGene9623
Genomic and cartography
GoldenPathTCL1B  -  14q32.13   chr14:95222516-95228720 +  14q32.1   [Description]    (hg18-Mar_2006)
EnsemblTCL1B - 14q32.1 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneTCL1B
Gene and transcription
GenbankAB018563 [ ENTREZ ]
GenbankAF110466 [ ENTREZ ]
GenbankAF137027 [ ENTREZ ]
GenbankAK023714 [ ENTREZ ]
GenbankBC041616 [ ENTREZ ]
RefSeqNM_004918 [ SRS ]    NM_004918 [ ENTREZ ]
RefSeqNM_199206 [ SRS ]    NM_199206 [ ENTREZ ]
RefSeqAC_000057 [ SRS ]    AC_000057 [ ENTREZ ]
RefSeqAC_000146 [ SRS ]    AC_000146 [ ENTREZ ]
RefSeqNC_000014 [ SRS ]    NC_000014 [ ENTREZ ]
RefSeqNT_026437 [ SRS ]    NT_026437 [ ENTREZ ]
RefSeqNW_001838115 [ SRS ]    NW_001838115 [ ENTREZ ]
RefSeqNW_925561 [ SRS ]    NW_925561 [ ENTREZ ]
AceViewTCL1B AceView - NCBI
UnigeneHs.632346 [ SRS ]    Hs.632346 [ NCBI ]     HS632346 [ spliceNest ]
Fast-db5433 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO95988 [ SRS]    O95988 [ EXPASY ]     O95988 [ INTERPRO ]     O95988 [ UNIPROT ]
InterproIPR004832 TCL1_MTCP1 [ SRS ]    IPR004832 TCL1_MTCP1 [ EBI ]
CluSTrO95988
PfamPF01840 TCL1_MTCP1 [ SRS ]    PF01840 TCL1_MTCP1 [ Sanger ]    pfam01840 [ NCBI-CDD ]
ProdomPD015575 TCL1_MTCP1[INRA-Toulouse]
ProdomO95988 TCL1B_HUMAN [ Domain structure ]   O95988 TCL1B_HUMAN  [ sequences sharing at least 1 domain ]
BlocksO95988
HPRD04795
Protein Interaction databases
DIPO95988
IntActO95988
Polymorphism : SNP, mutations, diseases
OMIM603769    [ map ]   
GENECLINICS603769
SNPTCL1B [dbSNP-NCBI]  
SNPNM_004918 [SNP-NCI]  
SNPNM_199206 [SNP-NCI]  
SNPTCL1B [GeneSNPs - Utah]  TCL1B] [HGBASE - SRS]
HAPMAPTCL1B [HAPMAP]  
HGMDTCL1B
General knowledge
Family BrowserTCL1B [UCSC Family Browser]
SOURCENM_004918
SOURCENM_199206
SMDHs.632346
SAGEHs.632346
PubGeneTCL1B
TreeFamTCL1B
CTD9623 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeTCL1B Related clones (RZPD - Berlin)
PubMed
PubMed8 Pubmed reference(s) in LocusLink

Bibliography

Abnormalities at 14q32.1 in T cell malignancies involve two oncogenes.
Pekarsky Y, Hallas C, Isobe M, Russo G, Croce CM
Proceedings of the National Academy of Sciences of the United States of America. 1999 ; 96 (6) : 2949-2951.
PMID 10077617
 
Identification of the TCL1/MTCP1-like 1 (TML1) gene from the region next to the TCL1 locus.
Sugimoto J, Hatakeyama T, Narducci MG, Russo G, Isobe M
Cancer research. 1999 ; 59 (10) : 2313-2317.
PMID 10344735
 
The protooncogene TCL1 is an Akt kinase coactivator.
Laine J, Kˆºnstle G, Obata T, Sha M, Noguchi M
Molecular cell. 2000 ; 6 (2) : 395-407.
PMID 10983986
 
Tcl1 enhances Akt kinase activity and mediates its nuclear translocation.
Pekarsky Y, Koval A, Hallas C, Bichi R, Tresini M, Malstrom S, Russo G, Tsichlis P, Croce CM
Proceedings of the National Academy of Sciences of the United States of America. 2000 ; 97 (7) : 3028-3033.
PMID 10716693
 
Differential regulation of Akt kinase isoforms by the members of the TCL1 oncogene family.
Laine J, Kˆºnstle G, Obata T, Noguchi M
The Journal of biological chemistry. 2002 ; 277 (5) : 3743-3751.
PMID 11707444
 
The TCL1 family of oncoproteins: co-activators of transformation.
Teitell MA
Nature reviews. Cancer. 2005 ; 5 (8) : 640-648.
PMID 16056259
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2008Herbert Eradat, Michael A Teitell
Departments of Medicine (H.E.) and Pathology and Laboratory Medicine (M.A.T.), David Geffen School of Medicine at UCLA, 675 Charles Young Drive South, 4-762 MacDonald Research Laboratories, Los Angeles, CA 90095-1732, USA

Citation

This paper should be referenced as such :
Eradat H, Teitell MA . TCL1B (T-cell leukemia/lymphoma 1B). Atlas Genet Cytogenet Oncol Haematol. January 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/TCL1BID354ch14q32.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:17:52 2008


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