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TNC (tenascin C (hexabrachion))

Identity

Other namesCytotactin
GMEM
GP (150-225)
Glioma associated extracellular matrix antigen
Hexabrachion
J1
Myotendinous antigen
Neuronectin
TN
HGNC TNC
Location 9q33.1
Location_base_pair Starts at 116822626 and ends at 116920307 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

 
  Table shows the lengths of the exons and introns of human tenascin-C.
Description The tenascin-C gene consists of 27 exons spanning 97.63 kb of genomic DNA.
Transcription 7271 bp mRNA transcribed on the reverse strand; 6333 bp open reading frame.
The transcript starts with a non-coding exon 1 (179 bp) followed by exon 2, which contains the start codon (ATG) for translation initiation. Exon 1 is located 26827 bp upstream of exon 2.

Protein

 
  Schematic representation of a monomeric tenascin-C subunit.
Description Tenascin-C consists of structural motifs arranged in a linear order. Mammalian tenascin-C proteins contain amino-terminal heptad repeats, 14.5 EGF-like repeats, 8 constant FN III domains, whereas 9 additional FN III domains can be included in a combinatorial manner by alternative splicing, and a carboxyl-terminal fibrinogen globe. A prominent feature of tenascin-C is the assembly into hexamers, so-called hexabrachions.
The primary sequence encodes a protein of 2110 amino acids. Amino acids 1-22 represent the secretion signal, amino acids 189-621 constitute the EGF-like repeats, and amino acids 622-1882 account for the FNIII domains. SDS-Page analysis revealed a molecular weight of full-length tenascin-C of 250kDa - 300kDa per subunit under reducing conditions.
Alternative splicing within the stretch of FN III domains results in a great number and diversity in tenascin-C isoforms.
Expression More than two decades ago, tenascin-C was discovered as an extracellular matrix protein (ECM) enriched in the stroma of gliomas and as a myotendinous antigen. Tenascin-C expression is highly regulated both during development and in the adult. Tenascin-C levels are high during embryogenesis, but almost absent during normal postnatal life with some basal expression detectable in tendons and ligaments only. In adult life, tenascin-C is also expressed within the sub-ventricular zone in the central nervous system, a region that constitutes the neural stem cell niche. A prominent feature of tenascin-C is its re-appearance in response to pathological situations such as infection, inflammation and tissue remodeling. Another striking example of a pathological situation leading to the re-expression of tenascin-C is the onset of tumorigenesis, where tenascin-C is specifically expressed in the activated tumor stroma. Tenascin-C can be induced by various stimuli, such as the pro- and anti-inflammatory cytokines, interleukins, TNFa or IFNg and growth factors such as TGFb , EGF or PDGF. Furthermore, tenascin-C inducing stimuli include mechanical stress, hypoxia, and reactive oxygen species, factors or conditions which also might play a prominent role in tumors.
Localisation Extracellular matrix.
Function Adhesion: Tenascin-C acts as an anti-adhesive substratum for a large variety of cells. Active inhibition of cell spreading was further confirmed by mixing tenascin-C together with fibronectin, which is a classical adhesion protein. Whereas cells on fibronectin nicely spread, form focal contacts and actin stress fibers, the same cells plated on a mixed fibronectin-tenascin-C substratum are not able to spread and do not form focal contacts and actin cables.
Migration: Tenascin-C enhances migration and invasiveness of different cancer cells.
Proliferation: Tenascin-C stimulates cancer cell proliferation.
Angiogenesis: Tenascin-C is expressed around angiogenic vessels in many tumors and there is evidence that it promotes and regulates angiogenesis in vitro and in vivo. Moreover, in glioma patients, clinical studies revealed an inhibition of tumor angiogenesis by applying antibodies directed against tenascin-C.
Homology Tenascin-C belongs to the tenascin family, which is a highly conserved family of large oligomeric extracellular matrix proteins. Vertebrate genomes harbor four tenascin genes, which have been termed tenascin-C, tenascin-XB (TNXB), tenascin-R, and tenascin-W.

Mutations

Germinal A SNP was identified resulting in an amino acid substitution (Leu1677Ile in the tenascin-C FN III domain D) which strongly associates with adult bronchial asthma. Therefore, this SNP might be an asthma marker and may be important in its pathogenesis.

Implicated in

Entity Cancer (general)
Oncogenesis Tenascin-C is strongly expressed in the stroma of various cancers and has been reported to be associated with the invasive front of tumors. For cancers in the lung, colon, and brain, high tenascin-C expression correlates with poor prognosis, whereas in other cancers no clear correlation between tenascin-C and survival or malignancy exists. In search for new diagnostic or prognostic tumor markers, tenascin-C levels have often been analyzed in sera of cancer patients and its potential value as a biomarker has been evaluated. Although elevated tenascin-C serum levels have been found in certain cancers, it still remains a questionable tumor marker. Tenascin-C levels are scattered over a wide range with many cancer patients having normal tenascin-C concentrations and its expression strongly correlates with inflammation or infection.
  
Entity Breast cancer
Oncogenesis By means of in vivo selection and microarray analysis a gene expression signature was identified that mediates breast cancer metastasis to lung. Tenascin-C is one of those genes that have been found to belong to the lung metastasis signature genes.
A recent study identified tenascin-C as a direct target gene for the microRNA miR-335. This microRNA is specifically lost as human breast cancer cells develop metastatic potential. Knockdown of tenascin-C in the highly metastatic LM2 cells (a metastatic derivative of the human breast cancer cell line MDA-MB-231) reduced migration in a trans-well assay and significantly inhibited lung colonization by LM2 cells.
  

External links

Nomenclature
HGNCTNC   5318
Entrez_GeneTNC  3371  tenascin C
Cards
AtlasTNCID42597ch9q33
GeneCardsTNC
EnsemblENSG00000041982 [Gene_View]  TNC [Vega]
GenatlasTNC
Genomic and cartography
GoldenPathTNC  -  9q33.1   chr9:116822626-116920307 -  9q32-q34   [Description]    (hg18-Mar_2006)
EnsemblTNC - 9q32-q34 [CytoView]
NCBIMapview
OMIM187380 Disease map [OMIM]
HomoloGeneTNC
Gene and transcription
GenbankAB210038 [ ENTREZ ]
GenbankBC151843 [ ENTREZ ]
GenbankBP278052 [ ENTREZ ]
GenbankBQ575939 [ ENTREZ ]
GenbankBQ880861 [ ENTREZ ]
RefSeqNM_002160 [ SRS ]    NM_002160 [ ENTREZ ]
RefSeqAC_000052 [ SRS ]    AC_000052 [ ENTREZ ]
RefSeqAC_000141 [ SRS ]    AC_000141 [ ENTREZ ]
RefSeqNC_000009 [ SRS ]    NC_000009 [ ENTREZ ]
RefSeqNT_008470 [ SRS ]    NT_008470 [ ENTREZ ]
RefSeqNW_001839236 [ SRS ]    NW_001839236 [ ENTREZ ]
RefSeqNW_924573 [ SRS ]    NW_924573 [ ENTREZ ]
CCDSTNC CCDS - NCBI
AceViewTNC AceView - NCBI
UnigeneHs.143250 [ SRS ]    Hs.143250 [ NCBI ]
Fast-db13747 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP24821 [ SRS]    P24821 [ EXPASY ]     P24821 [ INTERPRO ]     P24821 [ UNIPROT ] P24821 [ VarSplice FASTA ]
PrositePS00022 EGF_1 [ SRS ]    PS00022 EGF_1 [ Expasy ]
PrositePS01186 EGF_2 [ SRS ]    PS01186 EGF_2 [ Expasy ]
PrositePS50026 EGF_3 [ SRS ]    PS50026 EGF_3 [ Expasy ]
PrositePS50853 FN3 [ SRS ]    PS50853 FN3 [ Expasy ]
InterproIPR006210 EGF [ SRS ]    IPR006210 EGF [ EBI ]
InterproIPR000742 EGF_3 [ SRS ]    IPR000742 EGF_3 [ EBI ]
InterproIPR013111 EGF_extracell [ SRS ]    IPR013111 EGF_extracell [ EBI ]
InterproIPR006209 EGF_like [ SRS ]    IPR006209 EGF_like [ EBI ]
InterproIPR013032 EGF_like_reg_CS [ SRS ]    IPR013032 EGF_like_reg_CS [ EBI ]
InterproIPR002181 Fibrinogen_a/b/g_C [ SRS ]    IPR002181 Fibrinogen_a/b/g_C [ EBI ]
InterproIPR014716 Fibrinogen_a/b/g_C_1 [ SRS ]    IPR014716 Fibrinogen_a/b/g_C_1 [ EBI ]
InterproIPR008957 Fibronectin_typ-III-like_fold [ SRS ]    IPR008957 Fibronectin_typ-III-like_fold [ EBI ]
InterproIPR003961 FN_III [ SRS ]    IPR003961 FN_III [ EBI ]
CluSTrP24821
PfamPF00008 EGF [ SRS ]    PF00008 EGF [ Sanger ]    pfam00008 [ NCBI-CDD ]
PfamPF07974 EGF_2 [ SRS ]    PF07974 EGF_2 [ Sanger ]    pfam07974 [ NCBI-CDD ]
PfamPF00147 Fibrinogen_C [ SRS ]    PF00147 Fibrinogen_C [ Sanger ]    pfam00147 [ NCBI-CDD ]
PfamPF00041 fn3 [ SRS ]    PF00041 fn3 [ Sanger ]    pfam00041 [ NCBI-CDD ]
SmartSM00181 EGF [EMBL]
SmartSM00186 FBG [EMBL]
SmartSM00060 FN3 [EMBL]
BlocksP24821
PDB1TEN [ SRS ]    1TEN [ PdbSum ],   1TEN [ IMB ]   1TEN [ RSDB ]
PDB2RB8 [ SRS ]    2RB8 [ PdbSum ],   2RB8 [ IMB ]   2RB8 [ RSDB ]
PDB2RBL [ SRS ]    2RBL [ PdbSum ],   2RBL [ IMB ]   2RBL [ RSDB ]
HPRD01756
Protein Interaction databases
DIPP24821
IntActP24821
Polymorphism : SNP, mutations, diseases
OMIM187380    [ map ]   
GENETests187380
SNPTNC [dbSNP-NCBI]  
SNPNM_002160 [SNP-NCI]  
SNPTNC [GeneSNPs - Utah]  TNC] [HGBASE - SRS]
HAPMAPTNC [HAPMAP]  
HGMDTNC
Genetic AssociationTNC
CDC HuGETNC
General knowledge
Family BrowserTNC [UCSC Family Browser]
SOURCENM_002160
SMDHs.143250
SAGEHs.143250
GOreceptor binding [Amigo]  receptor binding
GOextracellular region [Amigo]  extracellular region
GObasement membrane [Amigo]  basement membrane
GOcell adhesion [Amigo]  cell adhesion
GOsignal transduction [Amigo]  signal transduction
GOneuromuscular junction development [Amigo]  neuromuscular junction development
KEGGCell Communication
KEGGFocal adhesion
KEGGECM-receptor interaction
PubGeneTNC
TreeFamTNC
CTD3371 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeTNC Related clones (RZPD - Berlin)
PubMed
PubMed88 Pubmed reference(s) in Entrez

Bibliography

Human glioma-mesenchymal extracellular matrix antigen defined by monoclonal antibody.
Bourdon MA, Wikstrand CJ, Furthmayr H, Matthews TJ, Bigner DD.
Cancer Res. 1983 Jun;43(6):2796-805.
PMID 6342760
 
Chick myotendinous antigen II. A novel extracellular glycoprotein complex consisting of large disulfide-linked subunits.
Chiquet M, Fambrough DM.
J Cell Biol. 1984 Jun;98(6):1937-46.
PMID 6202699
 
Tenascin interferes with fibronectin action.
Chiquet-Ehrismann R, Kalla P, Pearson CA, Beck K, Chiquet M.
Cell. 1988 May 6;53(3):383-90.
PMID 2452695
 
Tenascin-C in serum: a questionable tumor marker.
Schenk S, Muser J, Vollmer G, Chiquet-Ehrismann R.
Int J Cancer. 1995 May 16;61(4):443-9.
PMID 7538974
 
Tenascin-C expression by angiogenic vessels in human astrocytomas and by human brain endothelial cells in vitro.
Zagzag D, Friedlander DR, Dosik J, et al.
Cancer Res. 1996 Jan 1;56(1):182-9.
PMID 8548761
 
The Tenascin family of ECM Glycoproteins: Structure, Function, and Regulation Durig Embryonic Development and Tissue Remodeling.
Jones FS and Jones PL.
Dev Dyn. 2000 Jun;218(2):235-59. (REVIEW)
PMID 10842355
 
Tenascins: regulation and putative functions during pathological stress.
Chiquet-Ehrismann R, Chiquet M.
J Pathol. 2003 Jul;200(4):488-99. (REVIEW)
PMID 12845616
 
Coding SNP in tenascin-C Fn-III-D domain associates with adult asthma.
Matsuda A, Hirota T, Akahoshi M, et al.
Human Molecular Genetics. 2005 Oct 1;14(19):2779-86.
PMID 16115819
 
Genes that mediate breast cancer metastasis to lung.
Minn A, Gupta GP, Siegel PM, et al.
Nature. 2005 Jul 28;436(7050):518-24.
PMID 16049480
 
Potential oncogenic action of tenascin-C in tumorigenesis.
Orend G.
Int J Biochem Cell Biol. 2005 May;37(5):1066-83. (REVIEW)
PMID 15743679
 
Vascular tenascin-C regulates cardiac endothelial phenotype and neovascularization.
Ballard VL, Sharma A, Duignan I, et al.
Faseb J. 2006 Apr;20(6):717-9.
PMID 16461331
 
Tenascin-C induced signaling in cancer.
Orend G and Chiquet-Ehrismann R.
Cancer Lett. 2006 Dec 8;244(2):143-63. (REVIEW)
PMID 16632194
 
Endogenous human microRNAs that suppress breast cancer metastasis.
Tavazoie SF, Alarcon C, Oskarsson T, et al.
Nature. 2008 Jan 10;451(7175):147-52.
PMID 18185580
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written02-2008Martin Degen, Ruth Chiquet-Ehrismann
Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland

Citation

This paper should be referenced as such :
Degen M, Chiquet-Ehrismann R . TNC (tenascin C (hexabrachion)). Atlas Genet Cytogenet Oncol Haematol. February 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/TNCID42597ch9q33.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:30:41 2008


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