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TNFRSF6B (tumor necrosis factor receptor superfamily, member 6b, decoy)

Identity

Other namesDCR3 (decoy receptor 3)
DJ583P15.1.1
M68
TR6 (TNF receptor family member 6)
Hugo TNFRSF6B
Location 20q13.3

DNA/RNA

 
Description DNA sequence is located on chromosome 20. Transcription consists of 7 exons and 6 introns, spanning 3.6kb.
A shorter transcription variance (M68E) has been identified, and is transcribed from 3 exons and 2 introns spanning 1.9kb as illustrated above. The difference occurs at the 5' untranslated region, but the two transcripts encode the same isoform. Mice do not have a gene orthologue to human TNFRSF6B.
TNFRSF68B mRNA in Northen blot presents as a 1.2-knt band.

Protein

 
  A) Domains and Motifs. B) TNFRSF6B X-ray crystography
Description TNFRSF6B protein is 300-amino acid long, and has a molecular weight of 35 kD. Although TNFRSF6B belongs to the TNFR superfamily, it lacks the transmembrane and cytosolic domains in its sequence, and is a secreted protein. It contains 4 TNFR cystein-rich regions, as illustrated above.
TNFRSF6B can be easily cleaved between Arg218 and Ala219 in biological fluids and solutions. It has thus a very short (about 20 min) half-life in serum and in vivo. Mutation of arginine residue at position 218 to glutamine makes TNFRSF6B resistant to proteolysis, and significantly prolongs its half-life.
TNFRSF6B can bind to the TNF family members FasL, LIGHT and TL1A. It does not bind to other known TNF family members. Human TNFRSF6B can bind to mouse FasL, LIGHT and TL1A. This allows human DcR3/TNFRSF6B to function in mouse models both in vitro and in vivo.
The role of TNFRSF6B in apoptosis is obvious. FasL is a well-known molecule involved in apoptosis. LIGHT is a ligand for HVEM and LTbetaR, in addition to being a ligand for TNFRSF6B. LIGHT can induce apoptosis in cells expressing both HVEM and LTbetaR, or LTbetaR alone. TL1A, a member of the TNF family, can evoke apoptosis via its receptor, DR3. Consequently, the interaction of TNFRSF6B with FasL, LIGHT, and TL1A blocks apoptosis mediated by Fas, HVEM, LTbetaR and DR3.
Expression Normal tissue and cells express low-level TNFRSF6B, and healthy individuals have near-background serum TNFRSF6B levels. About 60% of malignant tumors of various tissue origins overexpress TNFRSF6B, and these patients have elevated serum TNFRSF6B levels. Serum TNFRSF6B levels of tumor patients are positively correlated to the degree of tumor malignancy and status of metastasis. It is hypothesized that malignant tumor cells secrete TNFRSF6B as a way to achieve survival advantage by blocking multiple apoptosis pathways.
Hepatocytes in liver cirrhosis have augmented TNFRSF6B expression and patients with liver cirrhosis have increased serum TNFRSF6B levels.
TNFRSF6B expression is low in resting T cells but is augmented in activated T cells, which probably represents a fine-tuning mechanism to balance the need for clonal expansion and subsequent massive activation-induced T cell death. About 40% of systemic lupus erythematosus patients have elevated serum TNFRSF6B levels.
TNFRSF6B expression in rheumatoid arthritis fibroblast-like synoviocytes is increased by TNFalpha
Localisation TNFRSF6B is a secreted protein, and is thus detected in body fluids. However, it can also be detected in cytoplasm before it is secreted.
Function As TNFRSF6B can block ligands from interacting with Fas, HVEM, LTbetaR, and DR3, all of which mediate apoptosis, it is thus can effectively inhibit apoptosis in many cell types. It is believed that many types of malignant tumors gain survival advantage by secreting TNFRSF6B which blocks tumor cell apoptosis.
Syngeneic islets transplanted to diabetes recipients survive better in the presence of administered exogenous human TNFRSF6B, due to the blockage of FasL-, LIGHT- and TL1A-triggered islets apoptosis. Transgenic expression of human TNFRSF6B in NOD mouse islets reduces diabetes pathogenesis, again, due to anti-apoptotic effect of TNFRSF6B.
The forward signaling from FasL to Fas, and from LIGHT to HVEM can provide costimulation signals to resting T cells. Blocking of these two signaling pathways reduces T cell responses to antigens. As LIGHT and FasL, although being ligands, are also transmembrane proteins, and are capable of reversely transducing costimulating signals into T cells, TNFRSF6B can also block such reverse signaling. The end result is that TNFRSF6B can reduce several costimulation pathways in T cells and inhibit T cell immune responses, such as cytokine secretion and proliferation in vitro, and cardiac allograft rejection in vivo in mouse models.
When human TNFRSF6B is linked to a transmembrane domain and is expressed on the mouse tumor cell surface, it can effectively trigger T cell costimulation via LIGHT and FasL reverse signaling, and cause effective tumor vaccination in mouse models.
When human TNFRSF6B is transgenically expressed in mice, it causes a systemic lupus erythrematosus-like syndrome. The expression of TNFRSF6B in bone marrow-derived cells is sufficient to induce this phenotype.
Recombinant human TNFRSF6B ameliorates an autoimmune crescentic glomerulonephritis model in mice.
TNFRSF6B can influence dendritic cells which in turn drive T cells to differentiate into Th2 cells.
TNFRSF6B can inhibit actin polymerization of T cells upon mitogen stimulation, and repress T-cell pseudopodium formation, which is known to be important for cell-cell interaction. As a consequence, T-cell aggregation after activation is suppressed by either soluble or solid phase TNFRSF6B.
Human T cells pretreated with soluble or solid-phase TNFRSF6B are compromised in migration in vitro and in vivo toward CXCL12. Mechanistically, a small GTPase Cdc42 fails to be activated after TNFRSF6B pretreatment of human T cells, and further downstream, p38 mitogen-activated protein kinase activation, actin polymerization, and pseudopodium formation are all down-regulated in the treated T cells.
Phagocytic activity toward immune complexes and apoptotic bodies as well as the production of free radicals and proinflammatory cytokines in response to lipopolysaccharide are impaired in TNFRSF6B-treated macrophages.

Mutations

Note Not reported yet.

Implicated in

Entity Malignant tumors
Disease Oncogenesis
TNFRSF6B is overexpressed in about 60% of various malignant tumors. Its anti-apoptotic effect provides the tumors a survival advantage, and its role in reducing T cell costimulation favors tumor evasion from the immune surveillance. No TNFRSF6B gene amplification in tumors has been identified.
Diagnosis and prognosis
TNFRSF6B in sera or tumor can be used as a parameter for tumor diagnosis and prognosis. The degree of tumor malignancy is correlated to TNFRSF6B levels. When a TNFRSF6B-expressing tumor is resected, serum TNFRSF6B levels will decrease to near-zero level. The re-arising of serum TNFRSF6B in such patients will indicate tumor reoccurrence.
Therapeutics
When TNFRSF6B is anchored on tumor cell surface, it can increase the antigenicity of the tumor, and such TNFRSF6B-expressing tumors can be used as tumor vaccine.
  
Entity Systemic lupus erythematosus (SLE)
Disease Pathogenesis
About 50% of SLE patients have elevated serum TNFRSF6B levels, and the levels augment during SLE flare-up. In animal models, human TNFRSF6B overexpression in mouse cells of hematopoietic origin leads to a SLE-like syndrome, suggesting a pathogenic role of TNFRSF6B in SLE.
Diagnosis
Serum TNFRSF6B can be used as a diagnostic parameter for SLE and SLE disease activity.
Therapeutics
Due to the pathogenic effect of TNFRSF6B on SLE, it is speculated that neutralizing TNFRSF6B might have therapeutic effect on a subpopulation of SLE patients, who are serum TNFSF6B positive.
  
Entity Islet primary nonfunction during islet transplantation
Disease Therapeutics
Due to the anti-apoptotic effect of TNFRSF6B, it can effectively protect islets from apoptosis during their isolation, transportation, and primary non-function after transplantation.
  

External links

Nomenclature
HugoTNFRSF6B
GDBTNFRSF6B
Entrez_GeneTNFRSF6B  8771  tumor necrosis factor receptor superfamily, member 6b, decoy
Cards
AtlasTNFRSF6BID42628ch20q13
GeneCardsTNFRSF6B
EnsemblTNFRSF6B [Search_View]   ENSG00000104312 [Gene_View]
GenatlasTNFRSF6B
GeneLynxTNFRSF6B
eGenomeTNFRSF6B
euGene8771
Genomic and cartography
GoldenPathTNFRSF6B  -  20q13.3   chr20:61796732-61800477 +  20q13.3   [Description]    (hg18-Mar_2006)
EnsemblTNFRSF6B - 20q13.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneTNFRSF6B
Gene and transcription
GenbankAF104419 [ ENTREZ ]
GenbankAF134240 [ ENTREZ ]
GenbankAF217793 [ ENTREZ ]
GenbankAF217794 [ ENTREZ ]
GenbankAY358279 [ ENTREZ ]
RefSeqNM_003823 [ SRS ]    NM_003823 [ ENTREZ ]
RefSeqNM_032945 [ SRS ]    NM_032945 [ ENTREZ ]
RefSeqAC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeqNC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeqNT_011333 [ SRS ]    NT_011333 [ ENTREZ ]
RefSeqNW_927339 [ SRS ]    NW_927339 [ ENTREZ ]
AceViewTNFRSF6B AceView - NCBI
UnigeneHs.434878 [ SRS ]    Hs.434878 [ NCBI ]     HS434878 [ spliceNest ]
Fast-db15232 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO95407 [ SRS]    O95407 [ EXPASY ]     O95407 [ INTERPRO ]
PrositePS00652 TNFR_NGFR_1 [ SRS ]    PS00652 TNFR_NGFR_1 [ Expasy ]
PrositePS50050 TNFR_NGFR_2 [ SRS ]    PS50050 TNFR_NGFR_2 [ Expasy ]
InterproIPR001368 TNFR_c6 [ SRS ]    IPR001368 TNFR_c6 [ EBI ]
CluSTrO95407
PfamPF00020 TNFR_c6 [ SRS ]    PF00020 TNFR_c6 [ Sanger ]    pfam00020 [ NCBI-CDD ]
SmartSM00208 TNFR [EMBL]
BlocksO95407
HPRD04527
Protein Interaction databases
DIPO95407
IntActO95407
Polymorphism : SNP, mutations, diseases
OMIM603361    [ map ]   
GENECLINICS603361
SNPTNFRSF6B [dbSNP-NCBI]  
SNPNM_003823 [SNP-NCI]  
SNPNM_032945 [SNP-NCI]  
SNPTNFRSF6B [GeneSNPs - Utah]  TNFRSF6B] [HGBASE - SRS]
HAPMAPTNFRSF6B [HAPMAP]  
COSMICTNFRSF6B [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDTNFRSF6B
General knowledge
Family BrowserTNFRSF6B [UCSC Family Browser]
SOURCENM_003823
SOURCENM_032945
SMDHs.434878
SAGEHs.434878
GOnucleic acid binding [Amigo]  nucleic acid binding
GOreceptor activity [Amigo]  receptor activity
GOprotein binding [Amigo]  protein binding
GOATP binding [Amigo]  ATP binding
GOextracellular region [Amigo]  extracellular region
GOsoluble fraction [Amigo]  soluble fraction
GOnucleobase, nucleoside, nucleotide and nucleic acid metabolic process [Amigo]  nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GOapoptosis [Amigo]  apoptosis
GOanti-apoptosis [Amigo]  anti-apoptosis
GOATP-dependent helicase activity [Amigo]  ATP-dependent helicase activity
GOhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Amigo]  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
KEGGCytokine-cytokine receptor interaction
PubGeneTNFRSF6B
TreeFamTNFRSF6B
CTD8771 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeTNFRSF6B Related clones (RZPD - Berlin)
PubMed
PubMed31 Pubmed reference(s) in LocusLink

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The glycosaminoglycan-binding domain of decoy receptor 3 is essential for induction of monocyte adhesion.
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Overexpression of human decoy receptor 3 in mice results in a systemic lupus erythematosus-like syndrome.
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PMID 17968950
 
Decoy receptor 3 expressed in rheumatoid synovial fibroblasts protects the cells against Fas-induced apoptosis.
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PMID 17393415
 
Epstein-Barr virus transcription activator Rta upregulates decoy receptor 3 expression by binding to its promoter.
Ho CH, Hsu CF, Fong PF, Tai SK, Hsieh SL, Chen CJ
Journal of virology. 2007 ; 81 (9) : 4837-4847.
PMID 17301127
 
Decoy receptor 3 ameliorates an autoimmune crescentic glomerulonephritis model in mice.
Ka SM, Sytwu HK, Chang DM, Hsieh SL, Tsai PY, Chen A
Journal of the American Society of Nephrology : JASN. 2007 ; 18 (9) : 2473-2485.
PMID 17687076
 
Evaluation of the novel serum markers B7-H4, Spondin 2, and DcR3 for diagnosis and early detection of ovarian cancer.
Simon I, Liu Y, Krall KL, Urban N, Wolfert RL, Kim NW, McIntosh MW
Gynecologic oncology. 2007 ; 106 (1) : 112-118.
PMID 17490732
 
Attenuation of bone mass and increase of osteoclast formation in decoy receptor 3 transgenic mice.
Tang CH, Hsu TL, Lin WW, Lai MZ, Yang RS, Hsieh SL, Fu WM
The Journal of biological chemistry. 2007 ; 282 (4) : 2346-2354.
PMID 17099218
 
Apoptosis of dendritic cells induced by decoy receptor 3 (DcR3).
You RI, Chang YC, Chen PM, Wang WS, Hsu TL, Yang CY, Lee CT, Hsieh SL
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PMID 18006694
 
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Contributor(s)

Written12-2007Jiangping Wu, Bing Han
CHUM Research Center, University of Montreal, Canada

Citation

This paper should be referenced as such :
Wu J, Han B . TNFRSF6B (tumor necrosis factor receptor superfamily, member 6b, decoy). Atlas Genet Cytogenet Oncol Haematol. December 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/TNFRSF6BID42628ch20q13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:27:43 2008


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