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TNF (tumor necrosis factor (TNF superfamily, member 2))

Identity

Other namesTNFa (Tumor Necrosis Factor-a)
Cachectin
TNF superfamily member 2
DIF
Hugo TNF
Location 6p21.3

DNA/RNA

Description The human TNFa gene has 4 exons spanning 2,762bp on the region of chromosome 6p21.3. The expression of TNFa gene generates a TNFa mRNA with size of 1,669nt. The 3'-UTR region of TNFa mRNA contains a cluster of "AUUUA" elements that can be seen among many mRNAs with a short half-life, (AUUAUUUAUUAUUUAUUUAUUUAUUUAUUUAUUUA). A multiple NF-kB binding elements have been identified in the promoter region of TNFa gene.

Protein

 
  The phylogenetic tree of TNF superfamily members.
Description The human TNFa protein contains 233 amino acids with a predicated molecular weight of 25.6 kDa. The TNFa is produced initially in a membrane-associated form, which is then subjected to enzymatic remove of the N-terminal 76 amino acids by TACE/ADAM17, a TNFa converting enzyme, to generate the soluble 17kDa TNFa molecule that forms homotrimer. TNFa is the first prototypic member identified in the TNF superfamily (TNFSF, Fig.1 and Table 1). The human TNF superfamily currently has 19 well-characterized members. Other members, such as TNFSF19, TNFSF21, and TNFSF22 have not been well-established. Although each member has its own receptor preference, a functional overlapping, such as induction of apoptosis and NF-kB activation, has been observed among the majority of these members. In addition, as indicated in the phylogenetic tree in Figure 1, all of these members exhibit an evolutional conservation in their amino acid sequences, many of which show characteristics of type II membrane proteins. These features of TNF superfamily suggest that the members in this family may derived from the same ancestral gene. Several members contain a C-terminal conserved domain, named the TNF-homology domain that shares 20-30% of sequence identity. Except TNFSF1 (lymphotoxin a) and TNFSF3 (lymphotoxin b) that can form either homotrimer or heterotrimer, the active form of other members in this family is homotrimer.
Expression TNFa is expressed virtually in every type of cells in response to inflammatory signals.
Localisation membrane (type II membrane protein), extracellular soluble form, blood stream, and biological fluids.
Function The most abundant cellular sources of TNFa are macrophage and monocyte. In response to inflammatory stimulation, macrophage or monocyte secretes TNFa that can induce apoptotic or necrotic cell death of certain tumor cell lines. In addition, TNFa is also capable of inducing cell proliferation and differentiation in many types of cells under certain circumstances. TNFa can be a pyrogen that causes fever by its direct action or by stimulation of interleukin 1 secretion. Sustained generation of TNFa in a variety of human diseases, especially cancer and severe infection, can cause cachexia-like syndrome. The increased expression of TNFa in adipose tissue was considered to be responsible for the development of obesity or diabetes due to the induction of insulin resistance by TNFa. All of above functional characteristics of TNFa are executed through specific members of the TNF receptor (TNFR) superfamily, mainly TNFR1, the primary receptor for soluble TNFa, and TNFR2, the predominant receptor for membrane-associated TNFa. These receptors trigger several intracellular signaling pathways, most importantly, the IkB kinase (IKK) and mitogen-activated protein kinase (MAPK) cascades, which govern gene expression through NF-kBNF-kB and AP-1 transcription factors, respectively.

Implicated in

Disease Arthritis, asthma, cancer, cardiovascular disorders, diabetes, HIV infection and AIDS, inflammatory bowel disease, lung fibrosis, obesity, septic shock, etc..
Cytogenetics Mutations or polymorphisms in the promoter or coding region of TNFa gene have been associated with asthma, celiac, septic shock susceptibility, silicosis, Psoriasis, GVHD, Leprosy, etc..
  

External links

Nomenclature
HugoTNF
GDBTNF
Entrez_GeneTNF  7124  tumor necrosis factor (TNF superfamily, member 2)
Cards
AtlasTNFaID319
GeneCardsTNF
EnsemblTNF [Search_View]   ENSG00000204490 [Gene_View]
GenatlasTNF
GeneLynxTNF
eGenomeTNF
euGene7124
Genomic and cartography
GoldenPathTNF  -  6p21.3   chr6:31651329-31654089 +  6p21.3   [Description]    (hg18-Mar_2006)
EnsemblTNF - 6p21.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneTNF
Gene and transcription
GenbankAF043342 [ ENTREZ ]
GenbankAF098751 [ ENTREZ ]
GenbankAJ227911 [ ENTREZ ]
GenbankAJ251878 [ ENTREZ ]
GenbankAJ251879 [ ENTREZ ]
RefSeqNM_000594 [ SRS ]    NM_000594 [ ENTREZ ]
RefSeqAC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeqNC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeqNT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeqNT_113891 [ SRS ]    NT_113891 [ ENTREZ ]
RefSeqNT_113894 [ SRS ]    NT_113894 [ ENTREZ ]
RefSeqNW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceViewTNF AceView - NCBI
UnigeneHs.241570 [ SRS ]    Hs.241570 [ NCBI ]     HS241570 [ spliceNest ]
Fast-db5874 (alternative variants)
Protein : pattern, domain, 3D structure
HPRD01855
Protein Interaction databases
Polymorphism : SNP, mutations, diseases
OMIM157300;191160;248310;600807;611162    [ map ]   
GENECLINICS157300;191160;248310;600807;611162
SNPTNF [dbSNP-NCBI]  
SNPNM_000594 [SNP-NCI]  
SNPTNF [GeneSNPs - Utah]  TNF] [HGBASE - SRS]
HAPMAPTNF [HAPMAP]  
COSMICTNF [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDTNF
General knowledge
Family BrowserTNF [UCSC Family Browser]
SOURCENM_000594
SMDHs.241570
SAGEHs.241570
GOprotein import into nucleus, translocation [Amigo]  protein import into nucleus, translocation
GOnegative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GOcell activation [Amigo]  cell activation
GOregulation of protein amino acid phosphorylation [Amigo]  regulation of protein amino acid phosphorylation
GOnegative regulation of L-glutamate transport [Amigo]  negative regulation of L-glutamate transport
GOcytokine activity [Amigo]  cytokine activity
GOtumor necrosis factor receptor binding [Amigo]  tumor necrosis factor receptor binding
GOprotein binding [Amigo]  protein binding
GOextracellular region [Amigo]  extracellular region
GOextracellular space [Amigo]  extracellular space
GOsoluble fraction [Amigo]  soluble fraction
GOplasma membrane [Amigo]  plasma membrane
GOglucose metabolic process [Amigo]  glucose metabolic process
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOapoptosis [Amigo]  apoptosis
GOanti-apoptosis [Amigo]  anti-apoptosis
GOhumoral immune response [Amigo]  humoral immune response
GOleukocyte adhesion [Amigo]  leukocyte adhesion
GOsignal transduction [Amigo]  signal transduction
GOJNK cascade [Amigo]  JNK cascade
GOmulticellular organismal development [Amigo]  multicellular organismal development
GOnegative regulation of cell proliferation [Amigo]  negative regulation of cell proliferation
GOinduction of apoptosis via death domain receptors [Amigo]  induction of apoptosis via death domain receptors
GOresponse to mechanical stimulus [Amigo]  response to mechanical stimulus
GOresponse to virus [Amigo]  response to virus
GOorgan morphogenesis [Amigo]  organ morphogenesis
GOintegral to membrane [Amigo]  integral to membrane
GOnegative regulation of transcription [Amigo]  negative regulation of transcription
GOcalcium-mediated signaling [Amigo]  calcium-mediated signaling
GOdefense response to bacterium [Amigo]  defense response to bacterium
GOpositive regulation of I-kappaB kinase/NF-kappaB cascade [Amigo]  positive regulation of I-kappaB kinase/NF-kappaB cascade
GOpositive regulation of neuron apoptosis [Amigo]  positive regulation of neuron apoptosis
GOcellular extravasation [Amigo]  cellular extravasation
GOregulation of osteoclast differentiation [Amigo]  regulation of osteoclast differentiation
GOpositive regulation of mitosis [Amigo]  positive regulation of mitosis
GOpositive regulation of transcription [Amigo]  positive regulation of transcription
GOpositive regulation of transcription from RNA polymerase II promoter [Amigo]  positive regulation of transcription from RNA polymerase II promoter
GOpositive regulation of translational initiation by iron [Amigo]  positive regulation of translational initiation by iron
GOnegative regulation of glucose import [Amigo]  negative regulation of glucose import
GOpositive regulation of JNK cascade [Amigo]  positive regulation of JNK cascade
GOpositive regulation of synaptic transmission [Amigo]  positive regulation of synaptic transmission
GOregulation of immunoglobulin secretion [Amigo]  regulation of immunoglobulin secretion
GOactivation of NF-kappaB transcription factor [Amigo]  activation of NF-kappaB transcription factor
GOpositive regulation of protein transport [Amigo]  positive regulation of protein transport
BIOCARTAHIV-I Nef: negative effector of Fas and TNF    [Genes]
BIOCARTACells and Molecules involved in local acute inflammatory response    [Genes]
BIOCARTAAcetylation and Deacetylation of RelA in The Nucleus    [Genes]
BIOCARTACadmium induces DNA synthesis and proliferation in macrophages    [Genes]
BIOCARTACytokine Network    [Genes]
BIOCARTAFree Radical Induced Apoptosis    [Genes]
BIOCARTAAdhesion and Diapedesis of Granulocytes    [Genes]
BIOCARTAStress Induction of HSP Regulation    [Genes]
BIOCARTAIL-10 Anti-inflammatory Signaling Pathway    [Genes]
BIOCARTASignal transduction through IL1R    [Genes]
BIOCARTACytokines and Inflammatory Response    [Genes]
BIOCARTAKeratinocyte Differentiation    [Genes]
BIOCARTAMsp/Ron Receptor Signaling Pathway    [Genes]
BIOCARTANF-kB Signaling Pathway    [Genes]
BIOCARTANFkB activation by Nontypeable Hemophilus influenzae    [Genes]
BIOCARTARegulation of transcriptional activity by PML    [Genes]
BIOCARTAMechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha)    [Genes]
BIOCARTASODD/TNFR1 Signaling Pathway    [Genes]
BIOCARTATNF/Stress Related Signaling    [Genes]
BIOCARTAChaperones modulate interferon Signaling Pathway    [Genes]
BIOCARTATNFR1 Signaling Pathway    [Genes]
BIOCARTAVisceral Fat Deposits and the Metabolic Syndrome    [Genes]
KEGGMAPK signaling pathway
KEGGCytokine-cytokine receptor interaction
KEGGApoptosis
KEGGTGF-beta signaling pathway
KEGGToll-like receptor signaling pathway
KEGGHematopoietic cell lineage
KEGGNatural killer cell mediated cytotoxicity
KEGGT cell receptor signaling pathway
KEGGFc epsilon RI signaling pathway
KEGGAdipocytokine signaling pathway
KEGGType II diabetes mellitus
KEGGType I diabetes mellitus
PubGeneTNF
TreeFamTNF
CTD7124 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeTNF Related clones (RZPD - Berlin)
PubMed
PubMed499 Pubmed reference(s) in LocusLink

Bibliography

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Signalling pathways of the TNF superfamily: a double-edged sword.
Aggarwal BB
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PMID 12787559
 
Adding facets to TNF signaling. The JNK angle.
Liu ZG
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Anti-TNF-alpha therapies: the next generation.
Palladino MA, Bahjat FR, Theodorakis EA, Moldawer LL
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PMID 12951580
 
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Tumor necrosis factor: an apoptosis JuNKie?
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Cell. 2004 ; 116 (4) : 491-497.
PMID 14980217
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written06-2004Fei Chen

Citation

This paper should be referenced as such :
Chen F . TNF (tumor necrosis factor (TNF superfamily, member 2)). Atlas Genet Cytogenet Oncol Haematol. June 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/TNFaID319.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:27:45 2008


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