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UBE2C (ubiquitin-conjugating enzyme E2C)

Identity

Other namesUBCH10
UBE2C-PEN
UbcH10
dJ447F3.2
LOC11065
HGNC UBE2C
Location 20q13.12
Location_base_pair Starts at 43874662 and ends at 43879003 bp from pter ( according to hg18-Mar_2006).
Local_order CENTROMERE---WFDC3-DNTTIP1-UBE2C-TNNC2-SNX21-ACOT8---TELOMERE
Note UbcH10 catalyzes the covalent attachment of ubiquitin to target proteins. It is required for the destruction of mitotic cyclins.

DNA/RNA

Description UBE2C is located on chromosome 20, at 20q13.12 according to Entrez Gene. In AceView, it covers 4.40 kb, from 43874623 to 43879017 on the direct strand.
Transcription There are 6 representative transcripts annotated in RefSeq database, but, according to AceView, Homo sapiens cDNA sequences in GenBank support at least 13 spliced variants. Isoform 1, the longest isoform, is composed of 6 coding exons of varying lengths, separated by introns: NM_007019.2 (mRNA-ubiquitin-conjugating enzyme E2C): mRNA product length: 823.

Protein

Description The UbcH10 gene encodes a member of the E2 ubiquitin-conjugating enzyme family that is involved in the ubiquitin dependent proteolysis. In this pathway, ubiquitin-activating enzyme (E1), ubiquitin-conjugating enzyme (E2), together with ubiquitin ligase (E3), catalyze the covalent attachment of ubiquitin to target proteins, targeting them for degradation mediated by the 26S proteasome.
The full-length UbcH10 contains 179 residues for a 19.6 kDa weight. It belongs to the class III Ubc proteins that are characterized by an NH2-terminal extension followed by the "core" Ubc fold.
Like all E2 enzymes, UbcH10 contains an active site cysteine residue (position 114) that is crucial for the formation of the ubiquitin-thiolester. Alteration of this residue C(114)S strongly inhibits ubiquitination of cyclin A and Cyclin B confering a dominant-negative phenotype.
Levels of UbcH10 are modulated by autoubiquitination. This process is dependent on a motif, the "destruction box" [Arg-X-X-Leu-X-X-(Leu/Ile)-X-Asp] recognized by the mitotic-specific ubiquitination machinery.
A study suggests that a destruction box is present in the UbcH10 sequence and includes residues 129-132 (Arg-Thr-Ile-Leu). Interestingly an SNP is reported for the residue 129 (refSNP ID: rs7352110, alleles A/G, Arg>Gly).
This would be important since any change in the putative destruction box could stabilize UbcH10 against destruction.
Expression UbcH10 mRNA and protein are expressed at low levels in most adult normal tissues. In contrast, UbcH10 mRNA and protein are highly expressed in tumor tissues. Moreover, UbcH10 protein levels fluctuate during the cell cycle being abundant during M and early G1 phases, but decreasing in late G1, S and G2 phases.
Localisation Nucleoplasm.
Cytosol.
Function UbcH10 is crucial for cell cycle progression during the G2/M phase, since its function is required for the destruction of mitotic cyclins and other mitosis-related substrates. UbcH10 interacts with the multiprotein complex APC (anaphase-promoting complex), which has E3 ubiquitin ligase activity, and targets for destruction substrates from the preceding mitosis (cyclin A, cyclin B, securin, geminin). Once these target proteins have been degraded, UbcH10 adds ubiquitins to itself, triggering its own destruction. As a result, the absence of UbcH10 allows the accumulation of cyclin A, which in turn contributes to the APC inactivation, providing a molecular switch that allows cells to proceed from cell division to a new round of DNA duplication. Hence, the function of UbcH10 is strictly linked to the progression of cell cycle through the M phase and the coupling of mitosis to S-phase entry via autonomous regulation of the anaphase-promoting complex.
 

Implicated in

Entity Human cancers
Note Several studies suggest a possible use of UbcH10 investigation (together with other molecular markers) in early detection of cancer. Other studies suggest that inhibition of UbcH10 could have a therapeutic potential in cancer treatment.
Disease UbcH10 overexpression was reported in a number of human cancer cell lines and primary tumors and expression data strongly support an association between high UbcH10 expression and a poor tumor differentiation. Expression studies have also shown a correlation between UbcH10 overexpression and the proliferation status since there is a good association with the proliferation marker Ki-67/MIB1. It was found overexpressed in lung carcinoma ( squamous and adenocarcinoma, poorly versus well differentiated), bladder carcinoma (grade 3 versus grade 2), prostate carcinoma(metastatic versus primary), gastric adenocarcinoma cervical, esophageal adenocarcinoma(adenocarcinoma versus Barrett's metaplasia), breast cancer (grade 3 versus grade 1, malignant versus benign neoplastic lesions), brain ( astrocytomas versus low-grade tumors or normal controls), medulloblastoma, ovarian carcinoma (grade 3 versus grade 1 and 2), thyroid carcinoma (poorly versus well differentiated), adrenocortical gland, Wilms tumor (relapsed versus relapse-free) hepatocellular carcinoma (correlation with higher frequencies of invasion to capsular formation, invasion to portal vein and tumor de-differentiation). Several expression analysis and functional studies have also shown that UbcH10 resulted up-regulated in experimental model of carcinogenesis, that its overexpression lead to the acquisition of a malignant phenotype and that its knockdown successfully resulted in growth arrest.
Prognosis It was seen that UbcH10 overexpression is a negative predictor of clinical outcome in patients affected by ovarian and hepatocellular carcinoma. Therefore, UbcH10 has been suggested as an helpful prognostic indicator for ovarian and hepatocellular carcinoma patients.
Oncogenesis 20q13.1 chromosomal region is frequently associated with genomic amplification in different malignant neoplasias and amplification of UbcH10 locus has been reported in the case of gastroesophageal carcinomas, colorectal carcinomas with liver metastases, cervical cancers, ovarian carcinomas, gliomas and culture cell lines obtained from anaplastic thyroid carcinomas.
  

External links

Nomenclature
HGNCUBE2C   15937
Entrez_GeneUBE2C  11065  ubiquitin-conjugating enzyme E2C
Cards
AtlasUBE2CID44079ch20q13
GeneCardsUBE2C
EnsemblUBE2C [Search_View]   ENSG00000175063 [Gene_View]  UBE2C [Vega]
GenatlasUBE2C
GeneLynxUBE2C
eGenomeUBE2C
euGene11065
Genomic and cartography
GoldenPathUBE2C  -  20q13.12   chr20:43874662-43879003 +  20q13.12   [Description]    (hg18-Mar_2006)
EnsemblUBE2C - 20q13.12 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneUBE2C
Gene and transcription
GenbankAK311949 [ ENTREZ ]
GenbankBC007656 [ ENTREZ ]
GenbankBC016292 [ ENTREZ ]
GenbankBC028161 [ ENTREZ ]
GenbankBC032677 [ ENTREZ ]
RefSeqNM_007019 [ SRS ]    NM_007019 [ ENTREZ ]
RefSeqNM_181799 [ SRS ]    NM_181799 [ ENTREZ ]
RefSeqNM_181800 [ SRS ]    NM_181800 [ ENTREZ ]
RefSeqNM_181801 [ SRS ]    NM_181801 [ ENTREZ ]
RefSeqNM_181802 [ SRS ]    NM_181802 [ ENTREZ ]
RefSeqNM_181803 [ SRS ]    NM_181803 [ ENTREZ ]
RefSeqAC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeqAC_000152 [ SRS ]    AC_000152 [ ENTREZ ]
RefSeqNC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeqNT_011362 [ SRS ]    NT_011362 [ ENTREZ ]
RefSeqNW_001838666 [ SRS ]    NW_001838666 [ ENTREZ ]
RefSeqNW_927339 [ SRS ]    NW_927339 [ ENTREZ ]
CCDSUBE2C CCDS - NCBI
AceViewUBE2C AceView - NCBI
UnigeneHs.93002 [ SRS ]    Hs.93002 [ NCBI ]     HS93002 [ spliceNest ]
Fast-db12236 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO00762 [ SRS]    O00762 [ EXPASY ]     O00762 [ INTERPRO ]     O00762 [ UNIPROT ] O00762 [ VarSplice ]
PrositePS00183 UBIQUITIN_CONJUGAT_1 [ SRS ]    PS00183 UBIQUITIN_CONJUGAT_1 [ Expasy ]
PrositePS50127 UBIQUITIN_CONJUGAT_2 [ SRS ]    PS50127 UBIQUITIN_CONJUGAT_2 [ Expasy ]
InterproIPR015582 UbcH10 [ SRS ]    IPR015582 UbcH10 [ EBI ]
InterproIPR016135 UBQ-conjugat/RWD-like [ SRS ]    IPR016135 UBQ-conjugat/RWD-like [ EBI ]
InterproIPR000608 UBQ-conjugat_E2 [ SRS ]    IPR000608 UBQ-conjugat_E2 [ EBI ]
CluSTrO00762
PfamPF00179 UQ_con [ SRS ]    PF00179 UQ_con [ Sanger ]    pfam00179 [ NCBI-CDD ]
SmartSM00212 UBCc [EMBL]
ProdomPD000461 UBQ_conjugat[INRA-Toulouse]
ProdomO00762 UBE2C_HUMAN [ Domain structure ]   O00762 UBE2C_HUMAN  [ sequences sharing at least 1 domain ]
BlocksO00762
PDB1I7K [ SRS ]    1I7K [ PdbSum ],   1I7K [ IMB ]   1I7K [ RSDB ]
HPRD05717
Protein Interaction databases
DIPO00762
IntActO00762
Polymorphism : SNP, mutations, diseases
OMIM605574    [ map ]   
GENECLINICS605574
SNPUBE2C [dbSNP-NCBI]  
SNPNM_007019 [SNP-NCI]  
SNPNM_181799 [SNP-NCI]  
SNPNM_181800 [SNP-NCI]  
SNPNM_181801 [SNP-NCI]  
SNPNM_181802 [SNP-NCI]  
SNPNM_181803 [SNP-NCI]  
SNPUBE2C [GeneSNPs - Utah]  UBE2C] [HGBASE - SRS]
HAPMAPUBE2C [HAPMAP]  
COSMICUBE2C [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDUBE2C
Genetic AssociationUBE2C
CDC HuGEUBE2C
General knowledge
Family BrowserUBE2C [UCSC Family Browser]
SOURCENM_007019
SOURCENM_181799
SOURCENM_181800
SOURCENM_181801
SOURCENM_181802
SOURCENM_181803
SMDHs.93002
SAGEHs.93002
Enzyme6.3.2.19 [ Enzyme-Expasy ]   6.3.2.19 [ Enzyme-SRS ]   6.3.2.19 [ IntEnz-EBI ]   6.3.2.19 [ BRENDA ]   6.3.2.19 [ KEGG ]   6.3.2.19 [ WIT ]
GOubiquitin-protein ligase activity [Amigo]  ubiquitin-protein ligase activity
GOnucleoplasm [Amigo]  nucleoplasm
GOcytosol [Amigo]  cytosol
GOubiquitin-dependent protein catabolic process [Amigo]  ubiquitin-dependent protein catabolic process
GOcell cycle [Amigo]  cell cycle
GOspindle organization and biogenesis [Amigo]  spindle organization and biogenesis
GOmitosis [Amigo]  mitosis
GOcyclin catabolic process [Amigo]  cyclin catabolic process
GOprotein ubiquitination [Amigo]  protein ubiquitination
GOligase activity [Amigo]  ligase activity
GOsmall conjugating protein ligase activity [Amigo]  small conjugating protein ligase activity
GOanaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Amigo]  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GOpositive regulation of exit from mitosis [Amigo]  positive regulation of exit from mitosis
GOpost-translational protein modification [Amigo]  post-translational protein modification
GOphosphoinositide-mediated signaling [Amigo]  phosphoinositide-mediated signaling
GOregulation of protein metabolic process [Amigo]  regulation of protein metabolic process
GOcell division [Amigo]  cell division
GOnegative regulation of ubiquitin-protein ligase activity during mitotic cell cycle [Amigo]  negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle
GOpositive regulation of ubiquitin-protein ligase activity during mitotic cell cycle [Amigo]  positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle
KEGGUbiquitin mediated proteolysis
PubGeneUBE2C
TreeFamUBE2C
CTD11065 [Comparative ToxicoGenomics Database]
Other databases
Other databaseBioGRID
Other databasePANTHER
Other databaseiHOP
Other databaseMGI GO
Other databaseCyclebase
Other databaseApropos
Other databaseYRC
Other databaseH-InvDB
Other databasehttp://genome.ewha.ac.kr/cgi-bin/ECquery.cgi?organism=human&query=UBE2C
Probes
ProbeUBE2C Related clones (RZPD - Berlin)
PubMed
PubMed26 Pubmed reference(s) in Entrez

Bibliography

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REVIEW articlesautomatic search in PubMed
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Contributor(s)

Written06-2008Pierlorenzo Pallante, Maria Teresa Berlingieri, Alfredo Fusco
Istituto di Endocrinologia ed Oncologia Sperimentale del CNR c/o Dipartimento di Biologia e Patologia Cellulare e Molecolare, Facolta di Medicina e Chirurgia, Universita degli Studi di Napoli "Federico II", via Pansini 5, 80131 Napoli, Italy

Citation

This paper should be referenced as such :
Pallate P, Berlingieri MT, Fusco A . UBE2C (ubiquitin-conjugating enzyme E2C). Atlas Genet Cytogenet Oncol Haematol. June 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/UBE2CID44079ch20q13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Nov 9 19:49:22 2008


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