Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FIM (fused in myeloproliferative disorders).

Identity

Other namesZNF198 (zinc finger protein 198).
RAMP
Hugo ZMYM2
Location 13q12
Local_order proximal from FLT1 and FLT3
 
  FIM (13q12) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Description full length cDNA: 5,016 bp; a single open reading frame of 4,137 bp; alternative spliced cDNA variant
Transcription main transcripts: 5.0 and 7.5 kb

Protein

 
Description 1 379 amino acids; hydrophobic protein containing several motifs: a N-terminal cystein-rich region containing ten repeats with the consensus sequence C-X2-C-X18-24-F/Y-C-X3-C, which correspond to a novel zinc finger motifs, a highly hydrophobic proline-rich stretch, and a bipartite nuclear localization signal
Expression wide
Localisation cell nucleus and nucleolus; within the nucleolus, colocalizes with UBF (Upstream Binding Factor)
Function may be involved in the regulation of rRNA transcription
Homology FIM is related to DXS6673E, a gene which may be related with mental retardation

Implicated in

Entity t(8;13)(p12;q12)/ANLL-NHL --> 5' FIM - 3' FGFR1 ; stem-cell myeloproliferative disorder associated with the 8p12 chromosomal translocations; fused to the catalytic domain of FGFR1
Disease stem-cell myeloproliferative disorder characterized by myeloid hyperplasia, T -cell lymphoblastic leukemia/lymphoma and peripheral blood eosinophilia, and it generally progresses to acute myeloid leukemia; specific to the 8p12 chromosomal region
Prognosis very poor (median survival: 12 mths)
Cytogenetics usually, t(8;13)(p12;q12) occurs as a single anomaly; duplication of the der(13) was found during disease progression, suggesting that the crucial event might lie on this derivative chromosome; additional abnormalities:+8, +21
 
Hybrid/Mutated Gene 5' FIM - 3' FGFR1; localisation: der(13)
Abnormal Protein aberrant tyrosine kinase composed of the N-term two-thirds of FIM (retaining the 10 putative zinc finger motifs), and the FGFR1 intracellular region minus the major part of the juxtamembrane domain
Oncogenesis constitutive kinase activity of FGFR1 through constitutive activation of FGFR1 signal transduction pathways via constitutive dimerization capability mediated by the FIM N-term zinc finger sequences
  

External links

Nomenclature
HugoZMYM2
GDBZMYM2
Entrez_GeneZMYM2  7750  zinc finger, MYM-type 2
Cards
AtlasZNF198ID114
GeneCardsZMYM2
EnsemblZMYM2 [Search_View]   ENSG00000005801 [Gene_View]
GenatlasZMYM2
GeneLynxZMYM2
eGenomeZMYM2
euGene7750
Genomic and cartography
GoldenPathZMYM2  -  13q12   chr13:19430810-19558938 +  13q11-q12   [Description]    (hg18-Mar_2006)
EnsemblZMYM2 - 13q11-q12 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneZMYM2
Gene and transcription
GenbankAF012126 [ ENTREZ ]
GenbankAF035374 [ ENTREZ ]
GenbankAF060181 [ ENTREZ ]
GenbankAJ224901 [ ENTREZ ]
GenbankAK226118 [ ENTREZ ]
RefSeqNM_003453 [ SRS ]    NM_003453 [ ENTREZ ]
RefSeqNM_197968 [ SRS ]    NM_197968 [ ENTREZ ]
RefSeqAC_000056 [ SRS ]    AC_000056 [ ENTREZ ]
RefSeqNC_000013 [ SRS ]    NC_000013 [ ENTREZ ]
RefSeqNT_024524 [ SRS ]    NT_024524 [ ENTREZ ]
RefSeqNW_925473 [ SRS ]    NW_925473 [ ENTREZ ]
AceViewZMYM2 AceView - NCBI
UnigeneHs.644041 [ SRS ]    Hs.644041 [ NCBI ]     HS644041 [ spliceNest ]
Fast-db384 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ9UBW7 [ SRS]    Q9UBW7 [ EXPASY ]     Q9UBW7 [ INTERPRO ]
InterproIPR011017 TRASH [ SRS ]    IPR011017 TRASH [ EBI ]
InterproIPR010507 Znf_MYM [ SRS ]    IPR010507 Znf_MYM [ EBI ]
CluSTrQ9UBW7
PfamPF06467 zf-MYM [ SRS ]    PF06467 zf-MYM [ Sanger ]    pfam06467 [ NCBI-CDD ]
SmartSM00746 TRASH [EMBL]
BlocksQ9UBW7
HPRD03745
Protein Interaction databases
DIPQ9UBW7
IntActQ9UBW7
Polymorphism : SNP, mutations, diseases
OMIM602221    [ map ]   
GENECLINICS602221
SNPZMYM2 [dbSNP-NCBI]  
SNPNM_003453 [SNP-NCI]  
SNPNM_197968 [SNP-NCI]  
SNPZMYM2 [GeneSNPs - Utah]  ZMYM2] [HGBASE - SRS]
HAPMAPZMYM2 [HAPMAP]  
HGMDZMYM2
General knowledge
Family BrowserZMYM2 [UCSC Family Browser]
SOURCENM_003453
SOURCENM_197968
SMDHs.644041
SAGEHs.644041
GOprotein binding [Amigo]  protein binding
GOcellular_component [Amigo]  cellular_component
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GObiological_process [Amigo]  biological_process
GOzinc ion binding [Amigo]  zinc ion binding
GOzinc ion binding [Amigo]  zinc ion binding
GOmetal ion binding [Amigo]  metal ion binding
PubGeneZMYM2
TreeFamZMYM2
CTD7750 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
ProbeZMYM2 Related clones (RZPD - Berlin)
PubMed
PubMed27 Pubmed reference(s) in LocusLink

Bibliography

Fibroblast growth factor receptor 1 is fused to FIM in stem-cell myeloproliferative disorder with t(8;13).
Popovici C, Adˆ©laˆØde J, Ollendorff V, Chaffanet M, Guasch G, Jacrot M, Leroux D, Birnbaum D, Pˆ©busque MJ
Proceedings of the National Academy of Sciences of the United States of America. 1998 ; 95 (10) : 5712-5717.
PMID 9576949
 
The t(8;13)(p11;q11-12) rearrangement associated with an atypical myeloproliferative disorder fuses the fibroblast growth factor receptor 1 gene to a novel gene RAMP.
Smedley D, Hamoudi R, Clark J, Warren W, Abdul-Rauf M, Somers G, Venter D, Fagan K, Cooper C, Shipley J
Human molecular genetics. 1998 ; 7 (4) : 637-642.
PMID 9499416
 
FGFR1 is fused with a novel zinc-finger gene, ZNF198, in the t(8;13) leukaemia/lymphoma syndrome.
Xiao S, Nalabolu SR, Aster JC, Ma J, Abruzzo L, Jaffe ES, Stone R, Weissman SM, Hudson TJ, Fletcher JA
Nature genetics. 1998 ; 18 (1) : 84-87.
PMID 9425908
 
Characterization of FIM-FGFR1, the fusion product of the myeloproliferative disorder-associated t(8;13) translocation.
Ollendorff V, Guasch G, Isnardon D, Galindo R, Birnbaum D, Pˆ©busque MJ
The Journal of biological chemistry. 1999 ; 274 (38) : 26922-26930.
PMID 10480903
 
ZNF198-FGFR1 transforming activity depends on a novel proline-rich ZNF198 oligomerization domain.
Xiao S, McCarthy JG, Aster JC, Fletcher JA
Blood. 2000 ; 96 (2) : 699-704.
PMID 10887137
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written03-1998Jean-Loup Huret, Dominique Leroux
Department of Genetics, University Joseph Fourier, Grenoble, France

Citation

This paper should be referenced as such :
Huret JL, Leroux D . FIM (fused in myeloproliferative disorders).. Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/ZNF198ID114.html
Pébusque MJ . FIM (fused in myeloproliferative disorders).. Atlas Genet Cytogenet Oncol Haematol. .
URL : http://AtlasGeneticsOncology.org/Genes/ZNF198ID114.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:28:12 2008


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