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Chromosome 15

Chromosome 15 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 15 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

dic(1;15)(p11;p11)
t(5;15)(p15;q11-13)
t(5;15)(q33;q22)
t(11;15)(q23;q14)
t(12;15)(p13;q25)
t(14;15)(q32;q11-13)
15q13-15 Rearrangements
+15 or trisomy 15 (as sole autosomal abnormality)
t(15;17)(q22;q21)
t(15;17)(q22;q21) in treatment related leukemia
t(15;21)(q22;q22)

Solid Tumors     

t(9;17)(q22;q11)
t(9;15)(q22;q21)
t(12;15)(p13;q25)
t(11;22)(q24;q12)
t(15;19)(q14;p13)

Cancer prone diseases     

Bloom syndrome

All Genes by Location (Kb)
Chromosome 15 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 15 - HUGO Chromosomes
  • Chromosome 15 - GoldenPath - Santa Cruz
  • Chromosome 15 - Ensembl Project
  • Chromosome 15 - Map View - NCBI
  • Chromosome 15 - OMIM Gene map
  • Chromosome 15 - Genomic Variants
  • Chromosome 15 - HAPMAP Project
  • Chromosome 15 - Genome Channel - ORNL
  • Chromosome 15 - LaunchPad HGMIS
  • Chromosome 15 - Human Protein Atlas
  • Chromosome 15 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 15 - Human BAC Resource (NCBI)
  • Chromosome 15 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 15 Cancer GeneWeb
  • Chromosome 15 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    BCL8 20870.055 15q11-q13
    BLM 91260.579 15q26.1
    BUB1B 40453.210 15q15
    C15orf55 34638.066 15q14
    CASC5 40886.447 15q14
    COPS2 49417.473 15q21.2
    CTSH 79214.092 15q24-q25
    GCNT3 59903.982 15q21.3
    IGF1R 99192.761 15q26.3
    ITGA11 68594.050 15q23
    MAPK6 52311.411 15q21
    NEIL1 75639.331 15q24.2
    NTRK3 88520.596 15q25
    PKM2 72491.370 15q22
    PLCB2 40580.099 15q15
    PML 74287.014 15q22
    RASGRF1 79252.291 15q24.2
    SHC4 49115.934 15q21.1-q21.2
    SPINT1 41136.643 15q15.1
    TCF12 57210.833 15q21
    THBS1 39873.280 15q15
    TRPM1 31293.553 15q13-q14
    TYRO3 41851.232 15q15
    UBE3A 25582.397 15q11-q13
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ACTC1 35080.297 15q11-q14
    ADAM10 58888.510 15q2|15q22
    ADAMTS17 100511.643 15q24
    ADAMTS7 79051.546 15q24.2
    ADAMTSL3 84322.838 15q25.2
    AEN 89164.527 15q26.1
    AKAP13 85923.871 15q24-q25
    ALDH1A2 58245.628 15q21.3
    ALDH1A3 101420.009 15q26.3
    ANP32A 69070.877 15q22.3-q23
    ANPEP 90328.127 15q25-q26
    ANXA2 60639.352 15q21-q22
    APBA2 29213.840 15q11-q12
    APH1B 63569.749 15q22.2
    AQP9 58430.408 15q22.1-q22.2
    ARHGAP11A 32907.691 15q13.2
    ARID3B 74833.548 15q24
    ARIH1 72766.667 15q24
    ARNT2 80696.692 15q24
    AVEN 34158.429 15q13.1
    B2M 45003.685 15q21-q22.2
    BCL2A1 80253.233 15q24.3
    BCL2L10 52401.824 15q21
    BMF 40380.094 15q14
    BNIP2 59955.064 15q22.2
    C15orf21 45803.333 15q21.1
    C15orf42 90118.818 15q26.1
    C15orf48 45722.763 15q21.1
    CA12 63615.731 15q22
    CALML4 68483.044 15q23
    CAPN3 42651.698 15q15.1-q21.1
    CASC4 44580.929 15q15.3
    CCNB2 59397.320 15q22.2
    CCNDBP1 43477.466 15q14-q15
    CCPG1 55647.438 15q21.1
    CD276 73976.622 15q23-q24
    CHD2 93443.551 15q26
    CHP 41523.437 15q13.3
    CHRFAM7A 30665.321 15q13.1
    CHRNA3 78887.647 15q24
    CHRNA5 78857.906 15q24
    CHRNA7 32322.726 15q14
    CIB1 90773.478 15q25.3-q26
    CIB2 78396.991 15q24
    CKMT1A 43985.084 15q15
    CKMT1B 43885.252 15q15
    CLK3 74907.335 15q24
    CPEB1 83211.952 15q25.2
    CRABP1 78632.666 15q24
    CRTC3 91073.198 15q26.1
    CSK 75074.425 15q23-q25
    CSNK1G1 64457.718 15q22.1-q22.31
    CSPG4 75966.664 15q24.2
    CT62 71402.583 15q23
    CYFIP1 22955.755 15q11
    CYP11A1 74630.103 15q23-q24
    CYP19A1 51500.255 15q21.1
    CYP1A1 75011.884 15q24.1
    CYP1A2 75041.184 15q24.1
    DAPK2 64199.236 15q22.31
    DENND4A 65952.959 15q22.31
    DET1 89055.714 15q25.3
    DLL4 41221.547 15q14
    DNAJA4 78556.989 15q25.1
    DNAJC17 41060.071 15q15.1
    DTWD1 49913.226 15q21.2
    DUOX1 45422.192 15q15.3
    DUOX2 45384.853 15q15.3
    DUOXA1 45409.688 15q21.1
    DUOXA2 45406.523 15q15.1
    DUT 48623.621 15q15-q21.1
    DYX1C1 55722.508 15q21.3
    EID1 49170.290 15q21.1-q21.2
    EIF2AK4 40226.347 15q15.1
    FAM82A2 41028.086 15q15.1
    FANCI 89787.194 15q26.1
    FBN1 48700.504 15q21.1
    FEM1B 68570.141 15q22
    FES 91428.276 15q26.1
    FGF7 49715.375 15q15-q21.1
    FOXB1 60296.421 15q21-q26
    FURIN 91411.885 15q26.1
    GABRB3 26788.695 15q11.2-q12
    GLCE 69452.973 15q23
    GLDN 51633.713 15q21.2
    GNB5 52413.123 15q21.2
    GREM1 33010.205 15q13-q15
    HDC 50534.148 15q21-q22
    HERC1 63900.818 15q22
    HERC2 28356.190 15q13
    HEXA 72635.779 15q23-q24
    HMG20A 77713.243 15q24
    HSP90B2P 99798.848 15q26.3
    IDH2 90627.214 15q26.1
    IL16 81489.219 15q26.3
    IMP3 75931.426 15q24
    INO80 41271.081 15q15.1
    IQGAP1 90931.473 15q26.1
    ISG20 89182.039 15q26
    ITPKA 41786.122 15q14-q21
    KIAA0101 64657.213 15q22.31
    KIAA1199 81071.712 15q24
    KIF23 69706.688 15q23
    LCMT2 43619.976 15q15.3
    LDHAL6B 59499.042 15q22.2
    LINGO1 77905.369 15q24.3
    LMAN1L 75105.194 15q24.1
    LOC100128564 64663.185 15q22.31
    LOXL1 74218.789 15q24-q25|15q22
    LTK 41795.840 15q15.1-q21.1
    MAN2C1 75648.135 15q11-q13
    MAP2K1 66679.211 15q22.1-q22.33
    MAP2K5 67835.021 15q23
    MAPKBP1 42066.632 15q15.1
    MEF2A 100106.133 15q26
    MEIS2 37183.233 15q14
    MESDC2 81268.095 15q13
    MESP2 90319.589 15q26.1
    MEX3B 82334.128 15q25.2
    MFGE8 89441.916 15q25
    MORF4L1 79165.172 15q24
    MTMR15 31196.076 15q13.2-q13.3
    MYO5A 52599.480 15q21
    NDN 23930.562 15q11.2-q12
    NDNL2 29560.359 15q13.1
    NEDD4 56119.131 15q
    NEO1 73344.825 15q22.3-q23
    NIPA2 23005.349 15q11.2
    NOX5 69222.864 15q23
    NR2F2 96869.157 15q26
    NRG4 76234.330 15q24.2
    NUSAP1 41624.926 15q15.1
    OCA2 28000.025 15q11.2-q12
    ONECUT1 53049.353 15q21.1-q21.2
    PAK6 40509.629 15q14
    PAR1 25380.788 15q11.2
    PCSK6 101844.134 15q26.3
    PDCD7 65409.718 15q22.31
    PDIA3 44038.590 15q15
    PIAS1 68346.572 15q
    PIGB 55611.133 15q21-q22
    POLG 89859.537 15q25
    PPIB 64448.015 15q21-q22
    PPP1R14D 41107.645 15q15.1
    PRC1 91509.274 15q26.1
    PTPN9 75759.463 15q24.2
    RAB11A 66161.796 15q21.3-q22.31
    RAB27A 55495.802 15q15-q21.1
    RAB8B 63481.728 15q22.2
    RAD51 40987.378 15q15.1
    RASGRP1 38780.303 15q14
    RASL12 65345.675 15q11.2-q22.33
    RCN2 77223.962 15q23
    RGMA 93586.637 15q26.1
    RNF111 59279.865 15q21
    RORA 60780.485 15q22.2
    RPS27L 63445.540 15q22.2
    SCG3 51973.550 15q21
    SCG5 32933.870 15q13-q14
    SELS 101812.391 15q26.3
    SEMA6D 48010.686 15q21.1
    SIN3A 75661.722 15q24.2
    SLC12A6 34522.198 15q13-q15
    SLC28A1 85427.913 15q25-q26
    SLC30A4 45774.682 15q11.2-q21.3|15q21.1
    SMAD3 67418.054 15q22.33
    SMAD6 67000.930 15q21-q22
    SNAP23 42787.835 15q15.1-q15.2
    SNRPN 25200.135 15q11.2
    SNURF 25200.135 15q12
    SNX1 64388.177 15q22.31
    SPRED1 38545.052 15q14
    ST20 80191.183 15q25.1
    ST8SIA2 92937.140 15q26
    STOML1 74275.561 15q24-q25
    SYNM 99645.286 15q26.3
    TJP1 29992.359 15q13
    TLE3 70340.543 15q22
    TLN2 62939.510 15q15-q21
    TMOD2 52043.758 15q21.1-q21.2
    TMOD3 52121.889 15q21.1-q21.2
    TNFAIP8L3 51348.801 15q21.2
    TP53BP1 43699.413 15q15-q21
    TPM1 63334.838 15q22.1
    TRPM7 50852.491 15q21
    TTBK2 43036.542 15q15.2
    UBE2Q2 76136.385 15q24.2
    ULK3 75128.459 15q24.1
    UNC45A 91473.410 15q26.1
    USP8 50716.579 15q21.2
    VPS39 42450.900 15q15.1
    WDR76 44119.112 15q15.3

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedJul 2010Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_15.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2010 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_15.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Jul 16 13:33:21 CEST 2010
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