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Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 16

Chromosome 16 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 16 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

t(1;16)(q11;q11)
t(1;16)(q12;q24)
t(3;16)(q21;q22)
t(3;16)(q27;p11)
t(3;16)(q27;p13)
t(4;16)(q26;p13)
t(5;16)(q33;q22) (AML; - ; rare)
t(8;16)(p11;p13) in treatment related leukemia
t(8;16)(p11;p13)
t(10;16)(q22;p13)
t(11;16)(q23;p13.3)
inv(16)(p13q22) in treatment related leukemia
del(16)(q22)
inv(16)(p13q22)
t(16;16)(p13;q22)
+16 or trisomy 16 (solely)
t(16;21)(q24;q22)
t(16;21)(p11;q22)

Solid Tumors     

t((7;16)(q33;p11)
t(12;13)(q14;q12)
t(11;16)(q13;p13)
t(12;16)(q13;p11)
t(12;16)(q13;p11)
t(12;16)(q13;p11)
t(12;15)(p13;q26)
t(16;17)(q22;p13)
t(16;21)(p11;q22)

Cancer prone diseases     

Hereditary diffuse gastric cancer (HDGC)
Rubinstein-Taybi syndrome (RTS)

All Genes by Location (Kb)
Chromosome 16 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 16 - HUGO Chromosomes
  • Chromosome 16 - GoldenPath - Santa Cruz
  • Chromosome 16 - Ensembl Project
  • Chromosome 16 - Map View - NCBI
  • Chromosome 16 - OMIM Gene map
  • Chromosome 16 - Genomic Variants
  • Chromosome 16 - HAPMAP Project
  • Chromosome 16 - Genome Channel - ORNL
  • Chromosome 16 - LaunchPad HGMIS
  • Chromosome 16 - Human Protein Atlas
  • Chromosome 16 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 16 - Human BAC Resource (NCBI)
  • Chromosome 16 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 16 Cancer GeneWeb
  • Chromosome 16 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCC1 15950.935 16p13.1
    CBFA2T3 87468.768 16q24
    CBFB 65620.551 16q22.1
    CDH1 67328.696 16q22.1
    CDT1 87397.687 16q24.3
    CIITA 10878.556 16p13
    CREBBP 3715.057 16p13.3
    EIF3C 28630.283 16p11.2
    ERCC4 13921.515 16p13.12
    FANCA 88331.460 16q24.3
    FBXO31 85920.445 16q24.2
    FUS 31098.954 16p11.2
    IL21R 27346.080 16p11
    MAF 78185.247 16q22-q23
    MMP2 54072.975 16q13-q21
    MVP 29739.288 16p13.1-p11.2
    MYH11 15704.493 16p13.11
    NOL3 65765.371 16q21-q23
    NQO1 68300.805 16q22.1
    PHLPP2 70236.353 16q22.2
    PLK1 23597.702 16p12.2
    RBL2 52025.852 16q12.2
    SOCS1 11255.775 16p13.13
    TSC2 2037.991 16p13.3
    USP7 8893.452 16p13.3
    WFDC1 82885.902 16q24.3
    WWOX 76691.052 16q23.3-q24.1
    ZFHX3 71374.287 16q22.3-q23.1
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCA3 2265.880 16p13.3
    ABCC11 46758.323 16q12.1
    ABCC6 16222.545 16p13.1
    ACD 66248.916 16q22.1
    ACSM1 20542.060 16p12.3
    ADAMTS18 75873.526 16q23
    ADCY7 48879.324 16q12-q13
    ALDOA 29971.992 16p11.2
    AMFR 54952.865 16q21
    ANKRD11 87861.536 16q24.3
    APRT 87403.378 16q24
    AQP8 25135.786 16p12
    ARHGAP17 24838.213 16p12.1
    ATMIN 79626.959 16q23.2
    ATP2A1 28797.310 16p12.1
    ATP6V0C 2503.954 16p13.3
    AXIN1 277.441 16p13.3
    BANP 86542.539 16q24.2-q24.3
    BCAR1 73820.429 16q23.1
    BCKDK 31027.163 16p11.2
    BCL7C 30806.617 16p11
    BFAR 14634.297 16p13.12
    BRD7 48910.442 16q12
    BTBD12 3571.184 16p13.3
    C16orf5 4500.678 16p13.3
    C16orf62 19474.541 16p12.3
    C1QTNF8 1078.227 16p13.3
    CACNA1H 1143.242 16p13.3
    CALB2 69950.127 16q22.2
    CCL17 55996.180 16q13
    CCL22 55950.219 16q13
    CCNF 2419.396 16p13.3
    CD19 28850.761 16p11.2
    CDH11 63538.184 16q22.1
    CDH13 81218.079 16q24.2-q24.3
    CDH15 87765.664 16q24.3
    CDH16 65499.526 16q22.1
    CDH3 67235.652 16q22.1
    CDH5 64958.026 16q22.1
    CDH8 60244.736 16q22.1
    CDK10 88280.579 16q24
    CDR2 22264.758 16p12.3
    CES1 54394.265 16q13-q22.1
    CES2 65525.848 16q22.1
    CFDP1 73885.109 16q22.2-q22.3
    CHMP1A 88238.345 16q24.3
    CHP2 23673.449 16p12.2
    CHST4 70117.562 16q22.2
    CHTF18 778.623 16p13.3
    CHTF8 67709.414 16q22.1
    CIAPIN1 56019.588 16q13-q21
    CLDN6 3004.714 16p13.3
    CLEC3A 76613.944 16q23
    CLUAP1 3490.964 16p13.3
    COTL1 83156.705 16q24.1
    COX4I1 84390.697 16q22-qter
    COX6A2 31346.556 16p
    CPNE7 88169.677 16q24.3
    CRYM 21177.343 16p13.11-p12.3
    CSNK2A2 56749.313 16q21
    CTCF 66153.965 16q21-q22.3
    CTF1 30815.429 16p11.2-p11.1
    CX3CL1 55963.915 16q13
    CYBA 87237.198 16q24
    CYLD 49333.462 16q12.1
    DDX19A 68938.325 16q22.1
    DDX19B 68890.573 16q22.1
    DDX28 66612.675 16q22.1
    DHODH 70600.144 16q22
    DHX38 70685.116 16q21-q22.3
    DNAJA2 45546.775 16q12.1
    DNAJA3 4415.859 16p13.3
    DOK4 56063.371 16q21
    DPEP1 88207.217 16q24.3
    DYNLRB2 79132.355 16q23.3
    E2F4 65783.569 16q21-q22
    E4F1 2213.568 16p13.3
    EEF2K 22125.093 16p12.2
    EME2 1763.230 16p13.3
    EMP2 10529.781 16p13.2
    ERN2 23609.127 16p12.2
    FA2H 73304.359 16q23
    FAM38A 87309.089 16q24.3
    FOXC2 85158.358 16q22-q24
    FOXF1 85101.634 16q24
    FOXL1 85169.616 16q24
    FUK 69045.999 16q22.1
    GAS8 88616.509 16q24.3
    GFER 1974.151 16p13.3-p13.12
    GIYD1 29373.376 16p11.2
    GIYD2 29373.376 16p11.2
    GLG1 73038.829 16q22.3
    GNAO1 54782.752 16q13
    GNG13 788.042 16p13.3
    GPR56 56211.411 16q12.2-q21
    GRIN2A 9754.768 16p13.2
    GSPT1 11869.486 16p13.1
    HAGH 1799.105 16p13.3
    HAS3 67698.944 16q22.1
    HBA1 166.679 16p13.3
    HMOX2 4466.342 16p13.3
    HP 70646.009 16q22.1
    HS3ST2 22733.361 16p12
    HSD11B2 66022.537 16q22
    HSD17B2 80626.359 16q24.1-q24.2
    HYDIN 69618.512 16q22.2
    IGFALS 1780.417 16p13.3
    IL17C 87232.502 16q24
    IL27 28418.184 -
    IL32 3055.314 16p13.3
    IL4R 27232.752 16p12.1-p11.2
    IRF8 84490.275 16q24.1
    IRX5 53522.612 16q11.2-q13
    ITGAD 31312.134 16p11.2
    ITGAL 30391.484 16p11.2
    ITGAM 31178.789 16p11.2
    ITGAX 31274.010 16p11.2
    JMJD5 27122.797 16p12.1
    KIAA0174 70486.947 16q22.2
    KIFC3 56349.630 16q13-q21
    LCAT 66531.288 16q22.1
    LITAF 11549.083 16p13.13
    Magmas 4330.253 16p13.3
    MAP1LC3B 85983.302 16q24.2
    MAPK3 30032.927 16p11.2
    MAPK8IP3 1696.222 16p13.3
    MAZ 29725.356 16p11.2
    MBTPS1 82644.870 16|16q24
    MC1R 88511.788 16q24.3
    MKL2 14072.697 16p13.12
    MLKL 73263.254 16q23.1
    MMP15 56616.783 16q13-q21
    MMP25 3036.683 16p13.3
    MPG 68.169 16p13.3
    MRPL28 357.397 16p13.3
    MSLN 751.134 16p13.3
    MT1A 55230.079 16q13
    MT1E 55217.086 16q13
    MT1F 55249.356 16q13
    MT1G 55258.154 16q13
    MT1H 55261.227 16q13
    MT2A 55199.979 16q13
    MT3 55180.768 16q13
    MTSS1L 69252.608 16q22.1
    MYST1 31036.486 16p11.2
    NDRG4 57055.495 16q21-q22.1
    NFAT5 68156.498 16q22.1
    NFATC3 66676.876 16q22.2
    NME3 1760.322 16q13
    NME4 387.193 16p13.3
    NOD2 49288.551 16q21
    NSMCE1 27143.816 16p12.1
    NTHL1 2029.817 16p13.3
    NUP93 55321.518 16q13
    NUPR1 28456.163 16p11.2
    ORC6L 45281.059 16q12
    OSGIN1 82540.173 16q23.3
    PALB2 23521.984 16p12.2
    PARD6A 66252.352 16q22.1
    PDF 67920.025 16q22.1
    PDPK1 2527.971 16p13.3
    PGP 2201.604 16p13.3
    PHKG2 30667.238 16p12.1-p11.2
    PIGQ 560.005 16p13.3
    PKD1 2078.712 16p13.3
    PKMYT1 2962.793 16p13.3
    PLA2G10 14673.906 16p13.1-p12
    PLCG2 80370.431 16q24.1
    PPL 4872.509 16p13.3
    PPP4C 29994.885 16p12-p11
    PRDM7 88650.475 16q24.3
    PRKCB 23754.801 16p11.2
    PRM2 11276.994 16p13.2
    PRSS21 2807.165 16p13.3
    PRSS8 31050.255 16p11.2
    PSKH1 66484.676 16q22.1
    PSMB10 66525.908 16q22.1
    PSMD7 72888.182 16q23-q24
    PYCARD 31120.308 16p12-p11.2
    PYDC1 31134.784 16p11.2
    RAB11FIP3 464.851 16p13.3
    RAB26 2138.652 16p13.3
    RAB40C 580.180 16p13.3
    RBBP6 24458.409 16p12.2
    RGS11 258.311 16p13.3
    RHBDF1 48.058 16p13.3
    RNF166 87290.410 16q24.3
    RNF40 30681.131 16p11.2-p11.1
    RPL13 88154.591 16q24.3|17p11.2
    RPS2 1952.063 16p13.3
    RRAD 65513.083 16q22
    RRN3 15061.380 16p12
    SCNN1B 23221.092 16p12.2-p12.1
    SEPT1 30296.957 16p11.1
    SEPX1 1928.235 16p13.3
    SEZ6L2 29789.981 16p11.2
    SF3B3 69115.192 16q22.1
    SH2B1 28782.579 16p11.2
    SIAH1 46951.947 16q12
    SLC12A3 55456.620 16q13
    SLC12A4 66534.878 16q22.1
    SLC5A2 31401.940 16p12-p11
    SLC6A2 54248.057 16q12.2
    SLC7A5 86421.130 16q24.3
    SLC9A3R2 2016.889 16p13.3
    SMG1 18723.677 16p12.3
    SMPD3 66949.733 16q22.1
    SOX8 971.809 16p13.3
    SPG7 88102.306 16q24.3
    SPN 29581.801 16p11.2
    SRCAP 30617.963 16p11.2
    SSTR5 1068.870 16p13.3
    ST3GAL2 68970.839 16q22.1
    STUB1 670.116 16p13.3
    SULT1A1 28524.419 16p12.1
    SULT1A2 28510.767 16p12.1
    TAOK2 29892.723 16p11.2
    TAT 70158.255 16q22.1
    TCEB2 2761.416 16p12.3
    TCF25 88467.495 16q24.3
    TERF2 67947.034 16q22.1
    TERF2IP 74239.185 16q23.1
    TESSP1 2788.487 16p13.3
    TGFB1I1 31390.985 16p11.2
    TK2 65100.846 16q22-q23.1
    TNFRSF12A 3010.314 16p13.3
    TNFRSF17 11966.465 16p13.1
    TNRC6A 24648.550 16p11.2
    TOX3 51029.419 16q12.1
    TP53TG3 33112.481 16p13
    TPSAB1 1230.679 16p13.3
    TRADD 65745.590 16q22
    TRAF7 2145.800 16p13.3
    TRAP1 3648.039 16p13.3
    TRIM72 31132.916 16p11.2
    TUBB3 88517.246 16q24.3
    UBE2I 1299.639 16p13.3
    VAC14 69278.843 16q22.1-q22.2
    VKORC1 31009.676 16p11.2
    WWP2 68353.775 16q22.1
    ZG16B 2820.174 16p13.3
    ZNF23 70039.004 16q22
    ZNF689 30522.201 16p11.2

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    Updated Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Sat Feb 6 14:40:48 CET 2010
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