Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 2

Chromosome 2 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

t(1;2)(q25;p23)
t(1;2)(q12;q37)
inv(2)(p23q35)
Trisomy 2
t(2;3)(p23;q21)
t(2;3)(p15-23;q26-27)
t(2;3)(p12;q27)
t(2;4)(p23;q25-q35)
t(2;5)(p23;q35)
t(2;8)(p12;q24)
t(2;9)(p11;p13)
t(2;11)(p21;q23)
t(2;11)(q11;q23)
t(2;11)(q31;p15) (MDS, AML; NUP98 and HOXD13; rare)
t(2;11)(q31;p15) (MDS, AML; NUP98 and HOXD11; rare)
t(2;11)(q37;q23) (AML; SEPT2 and MLL; rare)
t(2;11)(q37;q23) in AML
t(2;12)(q31;p13)
t(2;13)(p16;q12)
t(2;14)(p13;q32)
t(2;17)(p23;q23)
t(2;17)(p23;q25)
t(2;18)(p11;q21)
t(2;19)(p11;p13)
t(2;21)(p11;q22)
t(2;22)(p13;q11) (NHL; REL and IgL; rare)
t(2;22)(p23;q11.2)
t(2;22)(p23;q11.2)
t(X;2)(q11;p23)

Solid Tumors     

t(1;2)(q25;p23)
t(1;2)(q25;p23)
t(1;2)(q25;p23)
t(2;2)(p23;q13)
t(2;2)(p23;q13)
t(2;11)(p23;p15)
t(2;11)(p23;p15)
t(2;13)(q35;q14)
t(2;13)(q35;q14)
t(2;17)(p23;q23)
t(2;17)(p23;q23)
t(2;19)(p23;p13)
t(2;19)(p23;p13.1)
t(2;19)(p23;p13.1)
t(2;22)(q23;q12)

Cancer prone diseases     

Carney complex (CNC)
Familial clear cell renal cancer
Hereditary non polyposis colorectal carcinoma (HNPCC Syndrome)
Hereditary Pancreatic Cancer
Trichothiodystrophy (TTD)
Waardenburg syndrome (WS)
Xeroderma pigmentosum

All Genes by Location (Kb)
Chromosome 2 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 2 - HUGO Chromosomes
  • Chromosome 2 - GoldenPath - Santa Cruz
  • Chromosome 2 - Ensembl Project
  • Chromosome 2 - Map View - NCBI
  • Chromosome 2 - GDB (Genome Data Base)
  • Chromosome 2 - OMIM Gene map
  • Chromosome 2 - Genomic Variants
  • Chromosome 2 - HAPMAP Project
  • Chromosome 2 - Genome Channel - ORNL
  • Chromosome 2 - LaunchPad HGMIS
  • Chromosome 2 - Human Protein Atlas
  • Chromosome 2 - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • IMGT, the international ImMunoGeneTics database (Montpellier,France)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    SymbolLocation (Kb)Location (pter-qter)
    ACVR2A 148319.040 2q22.3
    ADAM23 207016.613 2q33
    AFF3 99530.150 2q11.2-q12
    ALK 29269.146 2p23
    ATF2 175647.254 2q32
    ATIC 215885.081 2q35
    BARD1 215301.520 2q34-q35
    BCL11A 60537.833 2p16.1
    BIRC6 32435.600 2p22-p21
    BOK 242146.865 2q37.3
    CXCR7 237143.119 2q37.3
    DIRC1 189306.710 2q33
    DIRC3 217856.992 2q35
    E2F6 11501.953 2p25.1
    ERCC3 127731.336 2q21
    HSPD1 198059.555 2q33.1
    IGK@ 88937.794 2p12
    IKZF2 213572.658 2q34
    LHCGR 48767.425 2p21
    MSH2 47483.767 2p22-p21
    MSH6 47863.725 2p16
    MYCN 15998.134 2p24.1
    NLRC4 32303.024 2p22-p21
    PAX3 222866.593 2q35-q37|2q35
    PMS1 190357.355 2q31-q33|2q31.1
    RANBP2 108702.369 2q12.3
    REL 60962.256 2p13-p12
    RHOB 20510.316 2p24
    RTN4 55052.833 2p16.3
    SDC1 20264.041 2p24.1
    SEPT2 241903.954 2q37
    TACSTD1 47449.971 2p21
    Other genes
    possibly implicated
    in cancer
    SymbolLocation (Kb)Location (pter-qter)
    AAK1 69538.631 2p14
    AAMP 218837.097 2q35
    ABCA12 215504.512 2q34
    ABCB11 169487.695 2q24
    ABCB6 219782.738 2q36
    ABI2 203901.248 2q33
    ACP1 254.896 2p25
    ACSL3 223433.976 2q34-q35
    ACTR2 65308.406 2p14
    ACTR3 114364.007 2q14.1
    ACVR1 158301.207 2q23-q24
    ACVR1C 158097.152 2q24.1
    ACYP2 54195.914 2p16.2
    ADAM17 9546.864 2p25
    ADI1 3480.698 2p25.3
    ADRA2B 96142.353 2p13-q13
    AHSA2 61258.325 2p15
    ALPI 233029.077 2q37.1
    ALPPL2 232979.796 2q37
    ALS2 202273.522 2q33.1
    ALS2CR2 202024.637 2q33.1
    ANAPC1 112243.113 2q12.1
    ANKRD36B 97487.693 2q11.2
    ANKRD44 197567.495 2q33.1
    ANTXR1 69093.993 2p13.1
    ANXA4 69822.785 2p13
    APOB 21077.807 2p24-p23
    ARHGAP15 143603.433 2q22.2
    ARHGAP25 68855.437 2p14
    ARHGEF4 131390.694 2q22
    ARMC9 231771.586 2q37.1
    ARPC2 218790.119 2q36.1
    ASPRV1 70040.730 2p14
    ATG4B 242225.700 2q37.3
    B3GNT2 62276.766 2p15
    BAZ2B 159883.738 2q23-q24
    BCL2L11 111594.962 2q13
    BCS1L 219232.623 2q33
    BCYRN1 219232.623 2p21
    BIN1 127522.079 2q14
    BMPR2 202949.916 2q33-q34
    BRE 27967.061 2p23.2
    BUB1 111111.883 2q14
    BVR1 111111.883 8q24
    C1D 68122.842 2p13-p12
    C2orf12 160836.908 2q24.3
    C2orf25 150134.398 2q23.2
    C2orf29 101235.810 2q11.2
    C2orf40 106048.545 2q12.2
    CAB39 231285.909 2q37.1
    CAD 27293.762 2p22-p21
    CAPG 85475.382 2p11.2
    CAPN10 241174.818 2q37.3
    CASP10 201755.866 2q33-q34
    CASP8 201830.999 2q33-q34
    CCL20 228386.814 2q33-q37
    CCNT2 135392.863 2q21.3
    CD28 204279.443 2q33
    CD302 160333.610 2q24.2
    CD8A 86865.240 2p12
    CD8B 86922.201 2p12
    CDC42EP3 37724.247 2p21
    CDCA7 173927.807 2q31
    CDK5R2 219532.642 2q35
    CDKL4 39259.194 2p22.1
    CENPA 26862.386 2p24-p21
    CFLAR 201689.135 2q33-q34
    CHN1 175372.338 2q31-q32.1
    CIAO1 96295.611 2q11.2
    CIB4 26657.577 2p23.3
    CLK1 201425.978 2q33
    CNTNAP5 124499.334 2q14.3
    COL4A3 227737.525 2q36-q37
    COL6A3 237897.401 2q37
    COPS7B 232359.406 2q37.1
    COX5B 97628.953 2cen-q13
    COX7A2L 42431.148 2p21
    CPS1 211129.583 2q35
    CREB1 208102.931 2q34
    CRIM1 36436.901 2p21
    CTLA4 204440.754 2q33
    CUL3 225043.113 2q36.2
    CXCR4 136588.390 2q21
    CYP1B1 38148.250 2p21
    DBI 119841.721 2q12-q21
    DDX1 15649.221 2p24
    DDX18 118288.725 2q14.1
    DHX57 38878.379 2p22.1
    DNAJB2 219852.284 2q32-q34
    DNAJC10 183289.244 2q32.1
    DNAJC5G 27351.793 2p23.3
    DNMT3A 25309.350 2p23
    DOK1 74635.368 2p13
    DPP4 162557.003 2q24.3
    DUSP2 96172.644 2q11
    DYSF 71534.268 2p13.3-p13.1
    EEF1B2 206732.563 2q33-q34
    EFEMP1 55946.606 2p16
    EIF2AK2 37187.203 2p22-p21
    EIF2AK3 88637.374 2p12
    EML4 42250.020 2p22-p21
    EN1 119316.217 2q13-q21
    EPAS1 46378.067 2p21-p16
    EPHA4 221990.993 2q36.1
    ERBB4 211948.687 2q33.3-q34
    ETAA1 67477.946 2p13-p15
    FAM119A 208185.086 2q33.3
    FAM84A 14690.307 2p24.3
    FANCL 58239.884 2p16.1
    FAP 162735.448 2q23
    FEV 219554.053 2q36
    FHL2 105343.717 2q12-q14
    FN1 215987.630 2q34
    FOSL2 28469.283 2p23.3
    FOXD4L1 113973.131 2q14.1
    FOXN2 48395.299 2p22-p16
    FSHR 49043.157 2p21-p16
    FZD5 208335.557 2q33-q34
    FZD7 202607.555 2q33
    GAL3ST2 242364.913 2q37.3
    GALNT3 166312.559 2q24-q31
    GBX2 236739.046 2q37
    GCG 162707.635 2q36-q37
    GDF7 20729.905 2p24.1
    GEMIN6 38858.831 2p22.1
    GEN1 17798.661 2p24.2
    GKN1 69055.209 2p14
    GKN2 69025.869 2p14
    GLI2 121266.327 2q14
    GLS 191453.792 2q32-q34
    GNLY 85774.925 2p11.2
    GPBAR1 218833.983 2q35
    GPC1 241023.788 2q35-q37
    GPD2 157000.211 2q24.1
    GPR39 132890.617 2q21-q22
    GRB14 165057.579 2q22-q24
    GREB1 11600.302 2p25.1
    HAT1 172487.204 2q31.2-q33.1
    HDAC4 239634.801 2q37.3
    HDLBP 241815.352 2q37.3
    HECW2 196772.222 2q32.3-q33.1
    HES6 238811.649 2q37.3
    HJURP 234410.226 2q37.1
    HK2 74913.290 2p13
    HOXA@ 74595.119 7p15-p14
    HOXD11 176680.330 2q31.1
    HOXD13 176665.778 2q31.1
    HOXD3 176737.051 2q31.1
    HOXD9 176695.334 2q31.1
    HSPE1 198073.365 2q33.1
    HTLVR 48395.299 17q21-q23
    HTRA2 74610.040 2p12
    ID2 8739.564 2p25
    IDH1 208809.199 2q33.3
    IFIH1 162831.836 2q24
    IGFBP2 217206.372 2q33-q34
    IGFBP5 217245.074 2q33-q36
    IHH 219627.391 2q33-q35
    IL18R1 102345.529 2q12
    IL1A 113247.964 2q14
    IL1B 113303.808 2q14
    IL1F7 113387.019 2q12-q14.1
    IL1F9 113452.077 2q12-q21
    IL1R1 102136.834 2q12
    IL1R2 101981.891 2q12-q22
    IL1RL1 102294.394 2q12
    IL1RN 113591.941 2q14.2
    IL8RA 218735.815 2q35
    IL8RB 218698.991 2q35
    ING5 242290.129 2q37.3
    INHA 220145.198 2q33-q36
    INHBB 120820.189 2cen-q13
    INPP1 190916.680 2q32
    INPP4A 98427.845 2q11.2
    INPP5D 233633.280 2q37.1
    IRS1 227308.182 2q36
    ITGA4 182029.864 2q31.3
    ITGA6 173000.560 2q31.1
    ITGAV 187163.045 2q31-q32
    ITGB1BP1 9463.274 2p25.2
    ITGB6 160666.480 2q24.2
    ITSN2 24279.240 2pter-p25.1
    JMJD1A 86521.865 2p11.2
    KBTBD10 170074.458 2q31.1
    KCMF1 85051.742 2p11.2
    KCNIP3 95326.799 2q21.1
    KCNJ3 155263.339 2q24.1
    KHK 27163.115 2p23.3
    KIAA1486 225973.846 2q36.3
    KIDINS220 8786.511 2p24
    LANCL1 211004.221 2q33-q35
    LCT 136261.885 2q21
    LIMS1 108571.199 2q12.3-q13
    LIMS2 128112.471 2q14.3
    LOC150786 131834.536 2q21.1
    LOC391533 41930.847 3p21.31
    LOH18CR1 37331.149 18q
    LOXL3 74613.454 2p13
    LRP1B 140705.466 2q21.2
    LRP2 169691.865 2q24-q31
    LTBP1 33025.896 2p22-p21
    LY75 160368.114 2q24
    MAL 95055.206 2cen-q13
    MAP1D 172573.050 2q31.1
    MAP2 210152.648 2q34-q35
    MAP3K2 127778.609 2q14.3
    MAP4K3 39329.927 2p22.1
    MAP4K4 101680.920 2q11.2-q12
    MAPRE3 27047.029 2p23.3-p23.1
    MAT2A 85619.799 2p11.2
    MCM6 136313.674 2q21
    MDH1 63669.626 2p13.3
    MEIS1 66516.036 2p14-p13
    MERTK 112372.662 2q14.1
    MGAT4A 98602.003 2q12
    MGAT5 134728.300 2q21
    MOBKL1B 74236.719 2p13.1
    MSTN 190628.671 2q32.2
    MTA3 42649.175 2p21
    MXD1 69995.707 2p13-p12
    MYCNOS 15993.837 2p24.1
    MYCP 15998.134 -
    MYO3B 170742.901 2q31.1-q31.2
    NAB1 191222.093 2q32.3-q33
    NAG 15224.483 2p24
    NCAPH 96365.211 2q11.2
    NCL 232027.704 2q12-qter
    NCOA1 24660.850 2p23
    NEB 152050.101 2q22
    NEUROD1 182249.439 2q32
    NFE2L2 177803.285 2q31
    NGEF 233451.663 2q37
    NHEJ1 219648.292 2q35
    NMI 151835.231 2q23
    NOSTRIN 169367.353 2q24.3
    NPAS2 100803.045 2q11.2
    NR4A2 156889.197 2q22-q23
    NRBP1 27504.977 2p23
    NRP2 206255.469 2q33.3
    ODC1 10497.959 2p25
    ORC2L 201483.140 2q33
    ORC4L 148408.203 2q22-q23
    OSR1 19414.728 2p24.1
    OXER1 42843.146 2p21
    PASK 241694.188 2q37.3
    PAX8 113690.045 2q12-q14
    PCBP1 70168.205 2p13-p12
    PCGEM1 193322.815 2q32
    PCGF1 74585.686 2p13.1
    PDCD1 242440.711 2q37.3
    PDK1 173129.025 2q31.1
    PELI1 64173.500 2p13.3
    PER2 238817.418 2q37.3
    PFTK2 202379.443 2q33.2
    PIGF 46661.918 2p21-p16
    PIP5K3 208839.236 2q33.3
    PLCD4 219180.876 2q35
    PLCL1 198539.545 2q33
    PLEK 68445.826 2p14
    PLEKHA3 179053.445 2q31.2
    PNPT1 55715.971 2p15
    POLE4 75039.283 2p12
    POLR1B 113016.084 2q13
    POLR2D 128320.705 2q21
    POMC 25237.226 2p23.3
    PPM1B 44249.504 2p21
    PPM1G 27457.566 2p23.3
    PPP1CB 28828.118 2p23
    PPP1R1C 182558.796 2q31.3
    PPP1R7 241738.575 2q37.3
    PPP3R1 68259.493 2p15
    PREPL 44399.407 2p21
    PRKAG3 219395.350 2q35
    PRKCE 45732.547 2p21
    PRKD3 37331.152 2p21
    PRLH 238139.956 2q37.3
    PROC 127892.487 2q13-q14
    PROM2 95303.928 2q11.1
    PSD4 113648.031 2q13
    PSME4 53945.075 2p16.2
    PTMA 232281.479 2q35-q36
    PTMAP7 232281.660 14q32
    PTPN18 130830.088 2q21.1
    PTPN4 120233.677 2q14.2
    PTPRN 219862.591 2q35-q36.1
    PUM2 20311.934 2p22-p21
    PXDN 1614.667 2p25
    RAB10 26110.478 2p23.3
    RAB17 238147.704 2q37.3
    RAB1A 65167.493 2p14
    RAB6C 130453.705 2q21.1
    RABL2A 114101.354 2q13
    RALB 120726.884 2cen-q13
    RAPH1 204014.439 2q33
    RASGRP3 33514.920 2p25.1-p24.1
    RBJ 25020.009 2p23.3
    RBMS1 160838.761 2q24.2
    REG1A 79201.092 2p12
    REG3A 79237.641 2p12
    REV1 99383.371 2q11.1-q11.2
    RHOQ 46623.371 2p21
    RND3 151032.955 2q23.3
    RNF103 86684.027 2p11.2
    RNF144A 6974.974 2p25.2-p25.1
    RNF149 101258.985 2q11.2
    RNF25 219236.832 2q35
    ROCK2 11239.229 2p24
    RPRM 154042.098 2q23.3
    RPS27A 55313.328 2p16
    RRM2 10180.186 2p25-p24
    RTKN 74506.497 2p13.1
    SAG 233881.207 2q37.1
    SATB2 199842.469 2q33
    SCG2 224169.904 2q35-q36
    SCLC1 224169.906 3p23-p21
    SCLY 238634.371 2q37.3
    SCN9A 166759.943 2q24
    SCTR 119913.889 2q14.1
    SEMA4F 74734.901 2p13.1
    SEPT10 109657.665 2q13
    SERPINE2 224548.122 2q33-q35
    SESTD1 179681.776 2q31.2
    SIX3 45022.541 2p16-p21
    SLC11A1 218954.996 2q35
    SLC19A3 228258.171 2q37
    SLC20A1 113119.998 2q11-q14
    SLC4A10 162189.091 2q23-q24
    SMARCAL1 216986.823 2q34-q35
    SMC6 17708.562 2p24.2
    SMEK2 55629.019 2p16.1
    SMYD1 88148.497 2p11.2
    SMYD5 73294.874 2p13.2
    SOS1 39066.470 2p22-p21
    SOX11 5750.250 2p25
    SP100 230989.115 2q37.1
    SP3 174481.505 2q31
    SP5 171280.107 2q31.1
    SPHKAP 228552.919 2q36
    SPRED2 65391.490 2p14
    SPTBN1 54639.035 2p21
    SRD5A2 31603.160 2p23
    SSB 170363.635 2q31.1
    SSFA2 182464.927 2q31.3
    STAT1 191548.510 2q32.2
    STAT4 191602.551 2q32.2-q32.3
    STK11IP 220170.840 2q35
    STK16 219818.468 2q34-q37
    STK17B 196710.103 2q32.3
    STK25 242083.106 2q37.3
    STK36 219245.053 2q35
    STK39 168518.777 2q24.3
    SUMO1 202779.148 2q33
    SUPT7L 27727.183 2pter-p25.1
    TACR1 75131.672 2p13.1
    TAF1B 9901.024 2p25
    TANK 161701.712 2q24-q31
    TCF7L1 85214.245 2p11.2
    TET3 74126.958 2p13.1
    TFPI 188037.205 2q32
    TGFA 70527.925 2p13
    TGFBRAP1 105249.974 2q12.1-q12.2
    THADA 43311.479 2p21
    TIA1 70292.320 2p13
    TLK1 171556.816 2q31.1
    TLX2 74595.119 2p13.1-p12
    TMEFF2 192522.994 2q32.3
    TMEM16G 241776.597 2q37.3
    TMSB10 84986.274 2p11.2
    TNFAIP6 151922.351 2q23.3
    TNFAIP7 151922.351 -
    TNP1 217432.427 2q35-q36
    TNS1 218372.757 2q35-q36
    TOC 218375.757 17q25
    TP53I3 24153.810 2p23.3
    TPO 1396.242 2p25
    TRAF3IP1 238893.821 2q37.3
    TRIB2 12774.659 2p25.1-p24.3
    TRIM54 27359.104 2p23.3
    TRPM8 234490.782 2q37.1
    TSGA10 98980.787 2q11.2
    TSN 122229.591 2q21.1
    TSSC1 3171.750 2p25.3
    TSSC2 3171.759 11p15.4
    TTL 112956.214 2q13
    TTN 179098.966 2q31
    TUBA4A 219823.245 2q35
    UBE2E3 181553.357 2q32.1
    UBE2F 238540.439 2q37.3
    UCN 27383.769 2p23-p21
    UGT1A1