Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 3

Chromosome 3 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

t(1;3)(p36;p21)
t(1;3)(p36;q21)
t(1;3)(p32;p21)
t(2;3)(p23;q21)
t(2;3)(p15-23;q26-27)
t(2;3)(p12;q27)
3q21q26 rearrangements in treatment related leukemia
3q27 rearrangements in non Hodgkin lymphoma
t(3;Var)(q27;Var) in non Hodgkin lymphoma
3q rearrangements in myeloid malignancies
inv(3)(p12q26)
ins(3;3)(q26;q21q26)
inv(3)(q21q26)
t(3;3)(q21;q26)
t(3;3)(p24;q26)
t(3;3)(q25;q27) (NHL; BCL6 and MBNL1; rare)
t(3;3)(q27;q29) (NHL; BCL6 and TFRC; rare)
t(3;11)(q25;q23)
inv(3)(q23q26)
+3 or trisomy 3 in non Hodgkin's lymphoma (NHL)
t(3;4)(p21;q34)
t(3;4)(q27;p13)
t(3;5)(q21;q31)/ANLL (AML; ---; not rare)
t(3;5)(q26;q34)
t(3;5)(q25;q34)
t(3;6)(q25;q26)
t(3;6)(q27;p21) (NHL; BCL6 and SFRS3; rare)
t(3;6)(q27;p21) (NHL; BCL6 and PIM1; rare)
t(3;6)(q27;q15) (NHL; BCL6 and SNHG5; rare)
t(3;7)(q26;q21)
t(3;7)(q27;p12-13)
t(3;7)(q27;q32)
t(3;8)(q21;q24) (AML;---; rare)
t(3;8)(q26;q24)
t(3;8)(q27;q24)
t(3;9)(p13;p13) (ALL; FOXP1 and PAX5; rare):
t(3;9)(q26;p23)
t(3;11)(p21;q23)
t(3;11)(p24;p15) (AML; NUP98 and TOP2B; rare)
t(3;11)(q21;q23) (AML; EEFSEC and MLL; rare)
t(3;11)(q26;p15)
t(3;11)(q27;q23) (NHL; BCL6 and OBF1, rare)
t(3;11)(q28;q23)
t(3;11)(q29;p15)
t(3;12)(q26;q21)
t(3;12)(q27;p13) (NHL; BCL6 and GAPD; rare)
t(3;12)(q27;q12) (NHL; BCL6 and LRMP; rare)
t(3;12)(q27;q23) (NHL; BCL6 and NACA; rare)
t(3;12)(q26;p13)
t(3;13)(q27;q14)
t(3;14)(p14;q32)
t(3;14)(q21;q32)
t(3;14)(q27;q32) (NHL; BCL6 and HSP90AA1; rare)
t(3;14)(q27;q32)
t(3;16)(q21;q22)
t(3;16)(q27;p11)
t(3;16)(q27;p13)
t(3;17)(p25;q21) (AML; -- and RARA; rare)
t(3;17)(q26;q22)
t(3;18)(q26;q11)
t(3;18)(q27;p11) (NHL; BCL6 and EIF4A2; rare)
t(3;19)(q27;q13) (NHL; BCL6 and NAPA; rare)
t(3;21)(p12;q22)
t(3;21)(q26;q22) in treatment related leukemia
t(3;21)(q26;q22)
t(3;22)(q27;q11)

Solid Tumors     

t(1;3)(q22;q12)
t(1;3)(p36;q25)
t(3;12)(q27;q15)
t(3;12)(q28;q15)
t(3;12)(q27;q15)
t(3;17)(q21;p13)

Cancer prone diseases     

Fanconi anaemia
Familial nervous system tumour syndromes
Holoprosencephaly-Diencephalic Hamartoblastoma (HDH).
Turcot syndrome
Von Hippel-Lindau

All Genes by Location (Kb)
Chromosome 3 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 3 - HUGO Chromosomes
  • Chromosome 3 - GoldenPath - Santa Cruz
  • Chromosome 3 - Ensembl Project
  • Chromosome 3 - Map View - NCBI
  • Chromosome 3 - OMIM Gene map
  • Chromosome 3 - Genomic Variants
  • Chromosome 3 - HAPMAP Project
  • Chromosome 3 - Genome Channel - ORNL
  • Chromosome 3 - LaunchPad HGMIS
  • Chromosome 3 - Human Protein Atlas
  • Chromosome 3 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 3 - Human BAC Resource (NCBI)
  • Chromosome 3 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 3 Cancer GeneWeb
  • Chromosome 3 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    BCL6 188921.859 3q27
    CBLB 106859.799 3q
    CCR9 45903.055 3pter-qter
    CD200 113534.606 3q12-q13
    CDC25A 48173.672 3p21
    CSTA 123526.701 3q21
    CTNNB1 41215.946 3p21
    DIRC2 123996.591 3q21.1
    DLG1 198253.828 3q29
    EIF4A2 187984.055 3q28
    EVI1 170283.981 3q26
    FANCD2 10043.113 3p25.3
    FHIT 59710.076 3p14.2
    FOXP1 71329.724 3p14.1
    GATA2 129680.960 3q21
    GHRL 10302.434 3p26-p25
    GMPS 157071.019 3q24
    HSPBAP1 123941.536 3q21.1
    HYAL1 50312.325 3p21.3-p21.2
    HYAL2 50330.232 3p21.3
    LPP 189413.415 3q27-q28
    MLF1 159771.647 3q25
    MLH1 37009.983 3p22.3
    MME 156280.130 3q21-q27
    MST1R 49899.440 3p21.3
    MUC4 196959.309 3q29
    NCKIPSD 48686.282 3p21
    PIK3CA 180349.005 3q26.3
    PLXNB1 48420.265 3p21.31
    PPARG 12304.349 3p25
    PRKCD 53170.263 3p21.31
    PTPRG 61522.283 3p21-p14
    RAF1 12600.100 3p25
    RAP2B 154362.719 3q25.2
    RARRES1 159905.134 3q25.32-q25.33
    RASSF1 50342.221 3p21.3
    RBM5 50101.372 3p21.3
    RHOA 49371.583 3p21.3
    RNF7 142939.741 3q22-q24
    ROBO1 78729.080 3p12.3
    RUVBL1 129282.491 3q21
    SEMA3F 50167.852 3p21.3
    TCTA 49424.643 3p21
    TFG 101910.850 3q12.2
    TFRC 197260.552 3q29
    TNFSF10 173706.158 3q26
    VHL 10158.319 3p25.3
    WNT5A 55474.783 3p21-p14
    XPC 14161.649 3p25
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    A4GNT 139325.250 3p14.3
    AADAC 153014.551 3q21.3-q25.2
    AADACL1 173831.129 3q26.31
    ABCC5 185184.235 3q27
    ABHD6 58198.299 3p21.2
    ABI3BP 101950.869 3q12
    ABTB1 128874.471 3q21
    ACPP 133518.901 3q21-qter
    ACVR2B 38470.794 3p22
    ACY1 51992.603 3p21.2
    ADAMTS9 64476.371 3p14.1
    ADIPOQ 188043.157 3q27
    ADPRH 120781.213 3q13.31-q13.33
    AGTR1 149898.348 3q21-q25
    AHSG 187813.544 3q27.3
    ALAS1 52207.184 3p21
    ALCAM 106568.403 3q13.1
    ALDH1L1 127305.098 3q21.2
    ANAPC13 135679.237 3q22.1
    AP2M1 185375.328 3q28
    APEH 49686.439 3p21
    APOD 196776.862 3q26.2-qter
    APPL1 57236.805 3p21.1-p14.3
    ARF4 57532.130 3p21.2-p21.1
    ARHGEF3 56736.486 3p21-p13
    ARL6 98966.285 3q11.2
    ARL6IP5 69216.780 3p14
    ARMC8 139388.838 3q22
    ARMET 51397.743 3p21.1
    ASTE1 132215.411 3q21.3
    ATP2B2 10340.707 3p25.3
    ATR 143650.767 3q22-q24
    ATRIP 48463.222 3p24.3-p22.1
    AXUD1 39158.350 3p22
    BAP1 52410.065 3p21.31-p21.2
    BCHE 166973.386 3q26.1-q26.2
    BHLHE40 4996.097 3p26
    BRPF1 9748.434 3p26-p25
    C3orf10 10132.333 3p25.3
    C3orf32 8636.320 3p25.3
    C3orf35 37415.972 3p22.3
    C3orf51 55667.515 3p14.3
    CACNA2D2 50375.235 3p21.3
    CACNA2D3 54131.733 3p21.1
    CAMK1 9774.031 3p25.3
    CAMP 48239.866 3p21.3
    CASR 123385.220 3q21.1
    CAV3 8750.496 3p25
    CCBP2 42825.968 3p21.3
    CCDC54 108578.878 3q13.12
    CCK 42274.322 3pter-p21
    CCNL1 158348.280 3q25.31
    CCR1 46218.204 3p21
    CCR2 46370.364 3p21
    CCR3 46258.692 3p21.3
    CCR4 32968.070 3p24-p21.3
    CCR5 46386.637 3p21.31
    CD47 109244.631 3q13.1-q13.2
    CD80 120725.830 3q13.3-q21
    CD86 123279.440 3q21
    CD96 112743.616 3q13.13-q13.2
    CDCP1 45098.773 3p21.3
    CEP63 135687.265 3q22.1
    CHDH 53825.428 3p21
    CHL1 213.650 3p26
    CHRD 185580.555 3q27
    CHST2 144321.358 3q24
    CISH 50618.890 3p21.3
    CLDN1 191506.187 3q28-q29
    CLDN16 191588.535 3q
    CLDN18 139200.348 3q22.3
    CLDND1 99717.007 3q12.1
    CLEC3B 45042.763 3p22-p21.3
    CMTM8 32255.175 3p22.2
    CNBP 130369.348 3q21
    CNTN3 74394.412 3p26
    COL7A1 48576.510 3p21.1
    COX17 120871.062 3q13.33
    CP 150372.980 3q23-q25
    CPB1 150028.278 3q24
    CTDSPL 37878.673 3p21.3
    CX3CR1 39279.989 3p21.3
    CXCR6 45959.977 3p21
    CYB561D2 50363.301 3p21.3
    DAG1 49482.569 3p21
    DCBLD2 99997.504 3q12.2
    DCLK3 36728.917 3p22.3
    DCUN1D1 184143.253 3q26.3
    DGKG 187347.684 3q27-q28
    DHX30 47819.655 3p24.3-p22.1
    DHX36 155476.151 3p13-q23
    DLEC1 38055.700 3p21.3
    DNAH12 57302.767 3p14.3
    DNAJB11 187771.161 3q27
    DNAJB8 129663.972 3q21.3
    DNAJC13 133619.243 3q22.1
    DNAJC19 182184.198 3q26.33
    DNASE1L3 58153.394 3p14.3
    DOCK3 50687.676 3p21
    DPH3 16273.573 3p25.1
    DPPA2 110495.331 3q13.13
    DPPA4 110527.678 3q13.13
    DTX3L 123765.875 3q21.1
    DUSP7 52059.799 3p21
    DVL3 185355.978 3q27
    EAF2 123036.724 3q21.1
    ECT2 173954.992 3q26.1-q26.2
    EDEM1 5204.359 3p26.1
    EEFSEC 129355.003 3q21.3
    EIF4G1 185520.957 3q27-qter
    EIF5A2 172088.898 3q26.2
    EPHA3 89239.364 3p11.2
    EPHA6 98016.115 3q12.1
    EPHB1 135996.950 3q21-q23
    EPHB3 185762.281 3q21-qter
    ERC2 55517.376 3p14.3
    ETV5 187246.800 3q28
    FAIM 139810.232 3q23
    FAM107A 58524.885 3p14.2
    FAM162A 123585.713 3q21.1
    FBXO40 122794.860 3q21.1
    FBXO45 197780.122 3q29
    FEZF2 62330.387 3p21.1
    FGD5 14835.473 3p25.1
    FGF12 193342.378 3q28
    FILIP1L 101049.462 3q12.1
    FLNB 57969.167 3p14.3
    FOXL2 140145.756 3q23
    FSTL1 121595.752 3q13.33
    FXR1 182113.146 3q28
    FYCO1 45934.399 3p21.3
    GCET2 113322.378 3q13.2
    GHSR 173648.028 3q26.31
    GLB1 33013.104 3p22.3
    GNAI2 50248.651 3p21
    GNAT1 50204.047 3p21
    GNB4 180596.570 3q27.1
    GNL3 52694.976 3p21.1
    GOLGA4 37259.742 3p22-p21.3
    GPR87 152494.587 3q24
    GPX1 49369.613 3p21.3
    GSK3B 121028.236 3q13.3
    GTF2E1 121944.248 3q21-q24
    HCLS1 122832.936 3q13
    HDAC11 13496.911 3p25.1
    HES1 195336.628 3q28-q29
    HESX1 57206.984 3p14.3
    HIGD1A 42799.404 3p22.1
    HLTF 150230.594 3q25.1-q26.1
    HRASLS 194441.612 3q29
    HRG 187866.492 3q27
    HRH1 11269.385 3p25
    HYAL3 50305.266 3p21.3
    ID2B 62084.205 3p21.1
    IGF2BP2 186844.221 3q27.2
    IGSF11 120102.169 3q13.32
    IL12A 161189.323 3p12-q13.2
    IL17RB 53855.617 3p21.1
    IL17RC 9933.764 3p25.3
    IL17RD 57099.050 3p21.1
    IL1RAP 191714.585 3q28
    IL5RA 3086.401 3p26-p24
    IMPDH2 49036.766 3p21.2
    IP6K1 49736.732 3p21.31
    IP6K2 48700.440 3p21.31
    IQSEC1 12913.719 3p25.2
    IRAK2 10181.563 3p25.3
    ITGA9 37468.817 3p21.3
    ITGB5 125964.485 3q21.2
    ITIH1 52786.648 3p21.2-p21.1
    ITIH3 52803.824 3p21.2-p21.1
    ITPR1 4510.034 3p26.1
    KAT2B 20056.528 3p24
    KIAA1524 109751.408 3q13.13
    KNG1 187917.814 3q21-qter
    KPNA1 123623.438 3q21
    KPNA4 161700.656 3q25.33
    LAMB2 49133.551 3p21.3-p21.2
    LAMP3 184322.697 3q26.3-q27
    LARS2 45405.079 3p21.3
    LBA1 36843.315 3p22.2
    LEPREL1 191157.212 3q29
    LIMD1 45611.327 3p21.31
    LMCD1 8518.511 3p26-p24
    LNP1 101602.727 3q12.2
    LOH3CR2A 8588.890 3p25.3
    LRIG1 66511.911 3p14
    LRRC15 195557.272 3q29
    LRRC3B 26639.304 3p24
    LRRFIP2 37069.121 3p22.1
    LTF 46452.500 3p21.31
    MAGEF1 185910.849 3q13
    MAGI1 65314.946 3p14.1
    MAP3K13 186563.664 3q25-q29
    MAP4 47867.184 3p21
    MAPKAPK3 50629.605 3p21.3
    MBD4 130632.483 3q21.3
    MBNL1 153468.519 3q25
    MCF2L2 184378.525 3q27
    MCM2 128799.943 3q21
    MDS1 170349.964 3q26
    MFI2 198214.553 3q28-q29
    MINA 99143.351 3q22.1
    MIR135A1 52303.275 3
    MITF 70068.443 3p14.1-p12.3
    MRAS 139550.198 3q22.3
    MST1 49696.385 3p21
    MUC13 126106.979 3q21.2
    MYD88 38154.973 3p22
    MYL3 46874.361 3p
    MYLK 124813.833 3q21
    NAT6 50308.837 3p21.3
    NCK1 138063.763 3q21
    NEK10 27232.102 3p24.1
    NEK11 132228.417 3q22.1
    NEK4 52719.841 3p21.1
    NIT2 101536.252 3q12.3
    NKTR 42617.151 3p23-p21
    NLGN1 174598.938 3q26.32
    NME6 48310.593 3p21.31
    NPCDR1 59931.617 3p14.2
    NR1D2 23962.616 3p24.2
    NR1I2 120982.021 3q12-q13.3
    NR2C2 14964.240 3p25
    NUP210 13332.737 3p25
    OGG1 9766.628 3p26
    OXSR1 38182.030 3p22.2
    OXTR 8767.095 3p25
    P2RY1 154035.426 3q25.2
    P4HTM 49002.345 3p21.31
    PAK2 197951.125 3q29
    PARP3 51951.401 3p22.2-p21.1
    PARP9 123729.461 3q13-q21
    PBRM1 52554.408 3p21
    PCBP4 51966.514 3p21
    PDCD10 168884.389 3q26.1
    PDCD6IP 33814.561 3p22.3
    PDZRN3 73514.342 3p14.1
    PFKFB4 48530.121 3p22-p21
    PHC3 171288.062 3q26.32
    PHF7 52419.567 3p21.31
    PIK3CB 139856.921 3q21-qter
    PIK3R4 131880.468 3q22.1
    PLCD1 38023.993 3p22-p21.3
    PLCL2 16901.456 3p25.3-p25.1
    PLCXD2 112876.197 3q13.2
    PLD1 172801.312 3q26
    PLS1 143797.919 3q23
    PLSCR1 147715.657 3q23
    PLXNA1 128190.192 3q21.2
    PLXND1 130756.746 3q21.3
    POLQ 122632.963 3q13.3
    POPDC2 120843.598 3q13.33
    POU1F1 87391.473 3p11.2
    PPM1L 161956.690 3q26.1
    PPP1R2 196722.512 3q29
    PPP2R3A 137167.257 3q22.2-q22.3
    PPP4R2 73128.809 3q29
    PRKAR2A 48763.097 3p21.3-p21.2
    PRKCI 171422.914 3q26.3
    PROK2 71903.496 3p21.1
    PROS1 95074.572 3p11-q11.2
    PSMD2 185499.716 3q27.3
    PTH1R 46894.240 3p22-p21.1
    PTPN23 47397.495 3p21.3
    PTX3 158637.274 3q25
    PXK 58293.657 3p21.2
    RAB43 130289.108 3q21.3
    RAB5A 19963.576 3p24-p22
    RAB6B 135025.770 3q22.1
    RAB7A 129927.669 3q21
    RABL3 121888.218 3q13.33
    RAD18 8896.560 3p25-p24
    RARB 25444.838 3p24
    RASA2 142688.616 3q22-q23
    RBM6 49952.596 3p21.3
    RBP1 140727.938 3q21-q23
    RETNLB 109957.176 3q13.1
    RFC4 187990.376 3q27
    RHO 130730.172 3q21-q24
    RNF123 49701.994 3p24.3
    RNF13 151013.165 3q25.1
    RNF168 197683.025 3q29
    ROPN1 125170.569 3q21.1
    RPL15 23933.643 3p24.1
    RPL29 52002.684 3p21.3-p21.2
    RPN1 129821.503 3q21.3
    RPSA 39424.115 3p21.3
    RTP3 46514.489 3p21.3
    RYBP 72506.439 3p14.2
    RYK 135358.668 3q22.1
    SATB1 18364.270 3p24.3
    SCN5A 38564.557 3p21
    SEC61A1 129253.902 3q21.3
    SEC62 171167.274 3q26.2
    SEMA3B 50280.044 3p21.3
    SEMA3G 52442.308 3p21.1
    SENP5 198079.124 3q29
    SERPINI2 168642.417 3q26
    SETMAR 4319.988 3p26.2
    SFMBT1 52913.667 3p21.31
    SGEF 155321.839 3q25.2
    SGOL1 20186.981 3p24.3
    SHISA5 48484.201 3p21.31
    SIAH2 151941.600 3q25
    SKIL 171560.105 3q26
    SLC38A3 50217.696 3p21.3
    SLC6A6 14419.110 3p26-p24
    SMARCC1 47602.382 3p21.31
    SMC4 161600.124 3q26.1
    SNRK 43303.008 3p22.1
    SOX2 182912.416 3q26.3-q27
    SRPRB 135007.367 3q22.1
    SS18L2 42607.302 3p21
    SSR3 157741.237 3q25.31
    SST 188869.388 3q28
    ST3GAL6 99934.262 3q12.2
    ST6GAL1 188222.359 3q27-q28
    STAG1 137538.689 3q22.2-q22.3
    STGC3 49272.521 -
    TADA3L 9796.654 3p25.3
    TBC1D23 101462.376 3q12.2
    TBL1XR1 178221.236 3q26.33
    TDGF1 46594.184 3p21.31
    TERC 170965.091 3q26.2
    TF 134947.925 3q21
    TFDP2 143154.018 3q23
    TGFBR2 30622.998 3p22
    TGM4 44891.102 3p22-p21.33
    THPO 185572.467 3q27
    THRB 24133.649 3p24.1-p22
    THUMPD3 9379.717 3p25.3
    TIMP4 12169.568 3p25
    TLR9 52230.138 3p21.3
    TM4SF1 150569.495 3q21-q25
    TMEM158 45240.960 3p21.31
    TMEM22 138020.551 3q22.3
    TMF1 69151.668 3p21-p12
    TNIK 172264.364 3q26.31
    TNK2 197074.633 3q29
    TOMM70A 101564.997 3q12.2
    TOP2B 25614.479 3p24
    TOPBP1 134802.139 3q22.1
    TP63 190831.910 3q27-q29
    TPRG1 190372.457 3q28
    TRA2B 187115.053 3q26.2-q27
    TRAIP 49841.032 3p21.31
    TRAK1 42107.750 3p22.1
    TREX1 48482.233 3p21.31
    TRH 131175.804 3q13.3-q21
    TRIM59 161635.985 3q26
    TRPC1 143925.956 3q23
    TSP50 46728.610 3p14-p12
    TUSC2 50337.345 3p21.3
    TUSC4 50359.923 3p21.3
    TWF2 52237.666 3p21.1
    TXNRD3 127809.027 3p13-q13.33
    UBA3 69186.571 3p24.3-p13
    UBA5 133861.830 3q22
    UBA7 49817.642 3p21
    UBE2E1 23822.443 3p24.2
    UBE2E2 23219.788 3p24.2
    UBP1 33404.832 3p22.3
    ULK4 41263.094 3p22.1
    UMPS 125931.903 3q13
    UPK1B 120375.115 3q13.32
    UQCRC1 48611.436 3p21
    USP4 49289.581 3p21.3
    VGLL3 87069.813 3p12.1
    VIPR1 42519.108 3p22
    VPRBP 51408.338 3p21.2
    WDR51A 52084.310 3p21.2
    WNT7A 13835.083 3p25
    WWTR1 150720.722 3q23-q24
    XCR1 46037.295 3p21.3-p21.1|3p21.3
    XIRP1 39199.711 3p21.33
    ZBTB20 115540.213 3q13.2
    ZIC1 148609.871 3q24
    ZMAT3 180224.219 3q26.32
    ZMYND10 50353.541 3p21.3
    ZNF148 126427.203 3q21.2
    ZNF197 44641.515 3p21

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedJun 2009Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jun 2009 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Sat Jun 27 16:43:53 CEST 2009
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