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Chromosome 5

Chromosome 5 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 5 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

t(1;5)(p32;q31)
t(1;5)(q21;q33) (MPD; TPM3/PDGFRB; rare)
t(1;5)(q22;q33)
t(2;5)(p21;q33)
t(2;5)(p23;q35)
t(3;5)(q21;q31)/ANLL (AML; ---; not rare)
t(3;5)(q26;q34)
t(3;5)(q25;q34)
t(4;5)(q21;q33)
t(4;5)(q31;q31)
del(5q) in myeloid neoplasms
i(5)(p10) in acute myeloid leukemia
Trisomy 5
t(5;7)(q33;q11)
t(5;9)(q33;q22)
t(5;10)(q33;q21)
ins(5;11)(q31;q13q23)
t(5;11)(q31;q23)
t(5;11)(q33;p13)
t(5;11)(q35;p15.5)
t(5;12)(q31;p13) in MDS, AML and AEL
t(5;12)(q33;q24)
t(5;12)(q33;p13)
t(5;14)(q33;q32) PDGFRB/TRIP11
t(5;14)(q33;q24)
t(5;14)(q33;q32) PDGFRB/KIAA1509
t(5;14)(q35;q11) (T-ALL; RanBP17or HOX11L2/TCR; rare)
t(5;14)(q35;q11)
t(5;14)(q35;q32)
t(5;14)(q35;q32.2)
t(5;14)(q31;q32)
t(5;15)(p15;q11-13)
t(5;15)(q33;q22)
t(5;16)(q33;q22)
dic(5;17)(q11;p11) (MDS, ANLL; -; not rare)
t(5;17)(q13;q21)
t(5;17)(q33;p11.2)
t(5;17)(q33;p13)
t(5;17)(q35;q21)
t(5;21)(q13;q22)

Solid Tumors     

Cancer prone diseases     

Familial adenomatous polyposis (FAP)
Cockayne syndrome
Hereditary desmoid disease.
Sotos syndrome (SOS)

All Genes by Location (Kb)
Chromosome 5 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 5 - HUGO Chromosomes
  • Chromosome 5 - GoldenPath - Santa Cruz
  • Chromosome 5 - Ensembl Project
  • Chromosome 5 - Map View - NCBI
  • Chromosome 5 - OMIM Gene map
  • Chromosome 5 - Genomic Variants
  • Chromosome 5 - HAPMAP Project
  • Chromosome 5 - Genome Channel - ORNL
  • Chromosome 5 - LaunchPad HGMIS
  • Chromosome 5 - Human Protein Atlas
  • Chromosome 5 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 5 - Human BAC Resource (NCBI)
  • Chromosome 5 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 5 Cancer GeneWeb
  • Chromosome 5 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AFF4 132211.072 5q31
    APC 112073.556 5q21-q22
    ARHGAP26 142150.292 5q31
    CCNB1 68462.913 5q12
    CSF1R 149432.855 5q33-q35
    CSNK1A1 148874.845 5q32
    DAB2 39371.780 5p13
    EGR1 137801.181 5q31.1
    ENC1 73923.235 5q12-q13.3
    ERCC8 60169.659 5q12.1
    FNIP1 130977.407 5q23.3
    FST 52776.595 5q11.2
    GNB2L1 180663.928 5q35.3
    HDAC3 141000.443 5q31
    IL3 131396.347 5q31.1
    IRF1 131817.301 5q31.1
    ITK 156607.907 5q31-q32
    LIFR 38475.065 5p13-p12
    LOX 121400.163 5q23.2
    MAPK9 179673.029 5q35
    MSH3 79950.294 5q11-q12
    NKX2-5 172659.107 5q34
    NPM1 170814.708 5q35
    NSD1 176560.833 5q35.2-q35.3
    PDCD6 271.736 5p15.33
    PDGFRB 149493.403 5q31-q32
    PRLR 35055.802 5p13.2
    PTTG1 159848.865 5q35.1
    SPINK7 147691.990 5q32
    TGFBI 135364.584 5q31
    TLX3 170736.288 5q35.1
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ACSL6 131289.152 5q31
    ADAM19 156904.313 5q32-q33
    ADAMTS12 33527.287 5q35
    ADAMTS16 5140.443 5p15
    ADAMTS19 128796.103 5q31
    ADAMTS2 178540.851 5qter
    ADAMTS6 64444.564 5q12
    ADCY2 7396.343 5p15.3
    ADRA1B 159343.740 5q23-q32
    ADRB2 148206.156 5q31-q32
    AHRR 304.291 5p15.3
    ALDH7A1 125878.918 5q31
    AMACR 33987.093 5p13
    ANKH 14704.910 5p15.1
    ANKHD1 139781.429 5q31.3
    ANXA6 150480.268 5q32-q34
    ATOX1 151122.384 5q32
    B4GALT7 177027.119 5q35.2-q35.3
    BASP1 17217.750 5p15.1-p14
    BHMT 78407.604 5q13.1-q15
    BNIP1 172571.445 5q33-q34
    BRD8 137492.586 5q31
    BTF3 72794.250 5q13.2
    C1QTNF2 159774.787 5q33.3
    C1QTNF3 34017.964 5p13
    C5orf13 111065.002 5q22.1
    C5orf39 43039.183 5p12
    C7 40909.599 5p13
    C9 39284.379 5p14-p12
    CAMK2A 149599.054 5q32
    CAMK4 110560.082 5q21.3
    CAMLG 134074.206 5q23
    CANX 179125.930 5q35
    CARD6 40841.410 5p13.1
    CAST 95997.941 5q15
    CCNG1 162864.577 5q32-q34
    CCNH 86690.083 5q13.3-q14
    CCNO 54526.983 5p15.2-p13.1
    CCT5 10250.282 5p15.2
    CD14 140011.313 5q22-q32|5q31.1
    CD180 66478.104 5q12
    CD74 149781.201 5q32
    CDC23 137523.341 5q31
    CDC25C 137620.959 5q31
    CDH12 21750.973 5p14-p13
    CDH18 19473.157 5p15.2-p15.1
    CDH6 31193.796 5p15.1-p14
    CDHR2 175969.512 5q35.2
    CDK7 68530.622 5q12.1
    CDKL3 133634.116 5q31
    CDX1 149546.344 5q31-q33
    CENPH 68485.375 5p15.2
    CHD1 98190.909 5q15-q21
    CKMT2 80529.139 5q13.3
    CLK4 178029.665 5q35
    CLPTM1L 1318.007 5pter-p15.3
    CLTB 175819.457 4q2-q3|5q35
    CNOT8 154238.198 5q31-q33
    CSF2 131409.485 5q31.1
    CSNK1G3 122847.793 5q23
    CTNNA1 138089.107 5q31
    CTNND2 10971.952 5p15.2
    CWC27 64064.755 5q12.3
    CXCL14 134906.373 5q31
    DAP 10679.343 5p15.2
    DDX41 176938.579 5q35.3
    DDX4 55033.845 5p15.2-p13.1
    DDX46 134094.461 5q31.1
    DHFR 79922.045 5q11.2-q13.2
    DHX29 54552.074 5q11.2
    DIAPH1 140894.589 5q31
    DNAJC18 138747.381 5q31.2
    DND1 140050.382 5q31.3
    DOCK2 169064.251 5q35.1
    DOK3 176928.915 5q35.3
    DPYSL3 146770.371 5q32
    DUSP1 172195.095 5q34
    EDIL3 83238.126 5q14
    EFNA5 106712.591 5q21
    ELL2 95220.804 5q15
    ELOVL7 60047.617 5q12.1
    EMB 49692.033 5q11.1
    ERAP1 96110.190 5q15
    ERAP2 96211.644 5q15
    ERBB2IP 65222.384 5q12.3
    ESM1 54273.696 5q11.2
    ETF1 137841.788 5q31.1
    EXOC3 443.334 5p15.33
    F2R 76011.868 5q13
    F2RL1 76114.833 5q13
    FABP6 159626.048 5q33.3-q34
    FAM134B 16473.148 5p15.1
    FAT2 150883.654 5q32-q33
    FBN2 127593.602 5q23-q31
    FBXL17 107194.740 5q21.3
    FBXL21 135266.006 5q31
    FBXL7 15500.305 5p15.1
    FBXO38 147763.546 5q32
    FBXO4 41925.356 5p12
    FCHSD1 141018.870 5q31.3
    FER 108083.523 5q21
    FGF10 44305.097 5p13-p12
    FGF1 141971.744 5q31
    FGF18 170846.667 5q34
    FGFR4 176513.921 5q35.1-qter
    FLT4 180034.754 5q35.3
    FOXD1 72742.087 5q12-q13
    FOXI1 169532.917 5q34
    FYB 39105.358 5p13.1
    G3BP1 151151.476 5q33.1
    GABRP 170210.723 5q33-q34
    GDF9 132196.878 5q31.1
    GDNF 37815.754 5p13.1-p12
    GEMIN5 154266.976 5q33.2
    GFRA3 137588.071 5q31.1-q31.3
    GHR 42424.026 5p13-p12
    GLRX 95149.554 5q14
    GOLPH3 32124.824 5p13.3
    GPX3 150399.999 5q23
    GRIA1 152870.084 5q33|5q31.1
    GRK6 176853.687 5q35
    GTF2H2 70330.953 5q12.2-q13.3
    GTF2H2B 69711.216 5q13.2
    GTF2H2C 68856.051 5q13.2
    GTF2H2D 68856.074 5q13.2
    GZMA 54398.474 5q11-q12
    H2AFY 134670.071 5q31.3-q32
    HAPLN1 82934.018 5q14.3
    HARS 140053.491 5q31.3
    HAVCR1 156456.531 5q33.2
    HAVCR2 156512.843 5q33.3
    HBEGF 139712.429 5q23
    HCN1 45259.353 5p12
    HEXB 73980.969 5q13
    HK3 176307.871 5q35.2
    HMHB1 143191.726 5q31.3
    HMMR 162887.517 5q33.2-qter
    HNRNPH1 179041.180 5q35.3
    HRH2 175085.040 5q35.2
    HSD17B4 118788.148 5q21
    HSPA4 132387.662 5q31.1-q31.2
    HSPA9 137891.025 5q31.1
    HSPB3 53751.445 5q11.2
    IL12B 158741.791 5q31.1-q33.1
    IL13 131993.865 5q31
    IL31RA 55147.334 5q11.2
    IL4 132009.373 5q31.1
    IL5 131877.136 5q31.1
    IL6ST 55236.695 5q11
    IL7R 35856.991 5p13
    IL9 135227.935 5q31.1
    IPO11 61714.711 5q12.1
    IQGAP2 75699.149 5q13.3
    IRX1 3596.168 5p15.3
    IRX2 2746.281 5p15.33
    ITGA1 52084.136 5q11.2
    ITGA2 52285.156 5q23-q31
    JMY 78531.925 5q14.1
    KCNMB1 169805.167 5q34
    KDM3B 137688.285 5q31
    KIF20A 137514.417 5q31
    LARS 145492.589 5q32
    LCP2 169675.088 5q33.1-qter
    LEAP2 132209.358 5q31.1
    LMNB1 126112.833 5q23.3-q31.1
    LNPEP 96271.346 5q15
    LTC4S 179220.986 5q35
    MAML1 179159.851 5q35
    MAP1B 71403.118 5q13
    MAP3K1 56110.900 5q11.2
    MAST4 65892.176 5q12.3
    MAT2B 162932.585 5q34-q35
    MCC 112357.797 5q21
    MEF2C 88014.058 5q14
    MGAT4B 179224.600 5q35
    MGC29506 138723.258 5q23-q31
    MGC42105 43192.327 5p12
    MRPS30 44809.027 5q11
    MSX2 174151.575 5q34-q35
    MTMR12 32227.112 5p13.3
    MTRR 7869.217 5p15.3-p15.2
    MYOT 137203.545 5q31
    MYOZ3 150040.404 5q33.1
    NAIP 70264.310 5q13.1
    NDUFAF2 60240.956 5q12.1
    NHP2 177576.465 5q35.3
    NIPBL 36876.861 5p13.2
    NKD2 1009.168 5p15.3
    NOP16 175811.233 5q35.2
    NR2F1 92919.043 5q14
    NR3C1 142657.497 5q31.3
    NRG2 139227.260 5q23-q33
    NSUN2 6599.355 5p15.31
    OCLN 68788.119 5q13.1
    ODZ2 166711.843 5q34
    OSMR 38845.960 5p13.1
    PAM 102201.527 5q14-q21
    PAPD7 6714.718 5p15
    PART1 59819.922 5q12.1
    PCDH1 141242.218 5q32-q33
    PCDHGA5 140743.898 5q31
    PCDHGC3 140855.569 5q31
    PCSK1 95726.119 5q15-q21
    PDE4D 58264.866 5q12
    PDE8B 76506.706 5q13.3
    PDLIM4 131593.351 5q31.1
    PDLIM7 176910.395 5q35.3
    PDZD2 31799.031 5p13.3
    PGGT1B 114546.528 5q22.3
    PIK3R1 67586.495 5q13.1
    PITX1 134363.425 5q31
    PLCXD3 41307.048 5p13.1
    PLEKHG4B 140.373 5p15.33
    PLK2 57749.812 5q12.1-q13.2
    POLK 74807.657 5q13
    POU4F3 145718.587 5q31
    PPAP2A 54720.685 5q11
    PPARGC1B 149109.815 5q32
    PPP2CA 133532.149 5q31.1
    PPP2R2B 145969.070 5q31-q32
    PRKAA1 40759.482 5p12
    PROP1 177419.236 5q35.3
    PSD2 139175.406 5q31.2
    PTGER4 40680.032 5p13.1
    PURA 139493.708 5q31
    RAB24 176728.200 5q35.3
    RAB3C 57878.939 5q13
    RAB9BP1 104435.176 5q21.2
    RAD1 34905.367 5p13.2
    RAD17 68666.532 5q13
    RAD50 131892.630 5q31
    RANBP17 170289.022 5q34
    RAP1BL 75465.910 5q13.3
    RAPGEF6 130759.616 5q31.1
    RASA1 86564.151 5q13.3
    RASGEF1C 179527.796 5q35.3
    RASGRF2 80256.558 5q13
    RBM22 150070.353 5q33.1
    RGS14 176784.844 5q35.3
    RHOBTB3 95066.850 5q15
    RICTOR 38938.022 5p13.1
    RIOK2 96502.450 5q15
    RNASEN 31400.602 5p13.3
    RNF130 179382.474 5q35.3
    RNF14 141348.622 5q23.3-q31.1
    RNF44 175953.700 5q35.2
    ROPN1L 10442.009 5p15.2
    RXFP3 33936.491 5p15.1-p14
    SAP30L 153825.517 5q33.2
    SCGB3A1 180017.106 5q35-qter
    SDHA 218.356 5p15
    SEMA5A 9035.138 5p15.2
    SEPP1 42799.983 5q31
    SEPT8 132086.509 5q31
    SKP1 133492.084 5q31
    SKP1P1 133493.425 7q11.21
    SKP2 36152.189 5p13
    SLC12A2 127419.483 5q23.3
    SLC12A7 1050.491 5p15
    SLC1A3 36608.431 5p13
    SLC23A1 138702.891 5q31.2-q31.3
    SLC26A2 149340.300 5q31-q34
    SLC36A1 150827.163 5q33.1
    SLC45A2 33945.974 5p13.2
    SLC6A3 1392.905 5p15.3
    SLC9A3 473.334 5p15.3
    SLIT3 168093.072 5q35
    SMAD5 135468.536 5q31
    SNCAIP 121647.820 5q23.1-q23.3
    SNCB 176047.211 5q35
    SPARC 151041.019 5q31.3-q32
    SPINK1 147204.143 5q32
    SPINK5 147443.535 5q32
    SPOCK1 136310.988 5q31
    SPRY4 141689.992 5q31.3
    SQSTM1 179233.388 5q35
    SRA1 139929.654 5q31.3
    SRD5A1 6633.500 5p15
    SSBP2 80715.673 5q14.1
    ST8SIA4 100142.640 5q21
    STARD4 110834.022 5q22.1
    STC2 172741.726 5q35.1
    STK10 171469.074 5q35.1
    TAF7 140698.058 5q31
    TAF9 68647.555 5q11.2-q13.1
    TAG 12574.968 -
    TCF7 133451.298 5q31.1
    TERT 1253.287 5p15.33
    THBS4 79331.170 5q13
    TNFAIP8 118604.418 5q23.1
    TNIP1 150409.508 5q32-q33.1
    TNPO1 72112.418 5q13.2
    TPPP 659.978 5p15.3
    TRIM36 114506.799 5q22.3
    TRIO 14143.829 5p15.2
    TRIP13 892.969 5p15.33
    TSLP 110407.390 5q22.1
    UBE2B 133706.870 5q23-q31
    UBE2D2 138940.751 5q31.2
    UIMC1 176332.006 5q35.2
    UNC5A 176237.560 5q35.2
    VCAN 82767.493 5q14.3
    VDAC1 133307.607 5q31
    WNT8A 137419.774 5q31
    WWC1 167719.065 5q34
    XRCC4 82373.317 5q13-q14
    YIPF5 143537.731 5q31.3
    ZDHHC11 795.720 5p15.33
    ZRSR1 112227.308 5q22

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedJul 2010Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_5.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2010 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_5.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Jul 16 13:33:18 CEST 2010
    Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

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