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Chromosome 6

Chromosome 6 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 6 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

der(6)t(1;6)(q21-23;p21)
t(1;6)(p35;p25)
t(1;6)(p36;p21)
t(3;6)(q25;q26)
t(3;6)(q27;p21) SFRS3/BCL6
t(3;6)(q27;p21) PIM1/BCL6
t(3;6)(q27;p21)
t(3;6)(q27;q15) (NHL; BCL6 and SNHG5; rare)
del(6q) abnormalities in lymphoid malignancies
del(6q) in Multiple Myeloma
i(6)(p10)
inv(6)(p15q13)
inv(6)(p25q13)
+6 or trisomy 6
t(6;7)(q23;q34)
t(6;8)(q11;q11)
t(6;8)(q27;p12)
t(6;9)(p23;q34)
t(6;11)(q13;q23)
t(6;11)(q15;q23)
t(6;11)(q21;q23) (AML, T-NHL; AF6q21 and MLL; rare)
t(6;11)(q27;q23)
t(6;12)(p21;p13) in lymphoid malignancies
t(6;12)(q15;p13)/NHL (AML, T-CLD; - ; rare)
t(6;12)(q21-22;p13) (AML, B-ALL, T-ALL, CLD; FRK and ETV6 in AML; rare)
t(6;12)(q22-23;p13) (Cell line (B-ALL); STL and ETV6; rare)
t(6;14)(p21;q32)
t(6;14)(p22;q32)
t(6;14)(p25;q32) ( CLD; IRF4 and IgH; rare)
t(6;14)(q25-27;q32)
t(6;21)(p22;q22)
t(X;6)(p11;q23)

Solid Tumors     

inv(6)(p13;q25)
6p21 rearrangements
t(6;11)(p21;q12)

Cancer prone diseases     

All Genes by Location (Kb)
Chromosome 6 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 6 - HUGO Chromosomes
  • Chromosome 6 - GoldenPath - Santa Cruz
  • Chromosome 6 - Ensembl Project
  • Chromosome 6 - Map View - NCBI
  • Chromosome 6 - OMIM Gene map
  • Chromosome 6 - Genomic Variants
  • Chromosome 6 - HAPMAP Project
  • Chromosome 6 - Genome Channel - ORNL
  • Chromosome 6 - LaunchPad HGMIS
  • Chromosome 6 - Human Protein Atlas
  • Chromosome 6 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 6 - Human BAC Resource (NCBI)
  • Chromosome 6 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 6 Cancer GeneWeb
  • Chromosome 6 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AKAP12 151561.134 6q24-q25
    BACH2 90636.248 6q15
    BAK1 33540.324 6p21.3
    CAGE1 7326.889 6p24.3
    CDKN1A 36646.459 6p21.2
    CITED2 139693.397 6q23.3
    CTGF 132269.319 6q23.1
    DAXX 33286.336 6p21.3
    DDX43 74104.285 6q12-q13
    DEK 18224.400 6p22.3
    E2F3 20402.137 6p22
    EEF1A1 74225.475 6q14.1
    EPHA7 93949.742 6q16.1
    FANCE 35420.138 6p22-p21
    FGFR1OP 167412.816 6q27
    FOXO3 108882.069 6q21
    HDAC2 114257.322 6q21
    HFE 26087.509 6p21.3
    HMGA1 34204.577 6p21
    ID4 19837.617 6p22-p21
    IER3 30710.977 6p21.3
    IGF2R 160390.131 6q26
    IRF4 391.752 6p25-p23
    LATS1 149982.051 6q24-q25.1
    LTA 31540.093 6p21.3
    MAP3K7 91225.353 6q16.1-q16.3
    MAPK13 36098.262 6p21.31
    MLLT4 168227.671 6q27
    MYB 135502.453 6q22-q23
    PIM1 37137.922 6p21.2
    PLAGL1 144261.439 6q24-q25
    POLH 43543.878 6p21.1
    PPARD 35310.335 6p21.2-p21.1
    RNASET2 167343.008 6q27
    RUNX2 45296.054 6p21
    SMAP1 71377.479 6q13
    SOX4 21593.972 6p22.3
    TFAP2A 10396.917 6p24
    TFEB 41651.716 6p21
    THBS2 169615.876 6q27
    TNF 31543.350 6p21.3
    TNFAIP3 138188.581 6q23
    WISP3 112375.278 6q21
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCC10 43399.489 6p21.1
    ABCF1 30539.170 6p21.33
    ACAT2 160182.989 6q25.3
    AGER 32148.746 6p21.3
    AHI1 135605.112 6q23.3
    AIF1 31583.033 6p21.3
    AIG1 143382.023 6q24.2
    AIM1 106959.730 6q21
    AKAP7 131571.504 6q23
    AMD1 111195.988 6q21-q22
    APOM 31623.671 6p21.33
    ARG1 131894.365 6q23
    ARHGAP18 129898.241 6q22.33
    ASF1A 119215.241 6q22.31
    ATG5 106632.354 6q21
    B3GALT4 33244.917 6p21.3
    BAG2 57037.104 6p12.1-p11.2
    BAI3 69345.632 6q12
    BAT1 31497.998 6p21.3
    BAT3 31606.806 6p21.3
    BCLAF1 136578.001 6q22-q23
    BMP5 55620.240 6p12.1
    BMP6 7727.011 6p24-p23
    BRD2 32938.678 6p21.3
    BVES 105544.700 6q21
    BYSL 41888.965 6p21.1
    C4A 31949.834 6p21.3
    C4B 31949.834 6p21.3
    CAP2 17393.736 6p22.3
    CASP8AP2 90539.619 6q15
    CCDC28A 139094.657 6q23.1-q24.1
    CCHCR1 31110.217 6p21.3
    CCNC 99990.264 6q21
    CCND3 41902.672 6p21
    CCR6 167525.295 6q27
    CD109 74405.508 6q13
    CD164 109687.718 6q21
    CD83 14117.865 6p23
    CDC5L 44355.302 6p21
    CDK19 110931.181 6q21
    CENPW 126661.253 6q22.32
    CGA 87795.222 6q12-q21
    CLIC1 31698.360 6p22.1-p21.2
    CNR1 88849.587 6q14-q15
    COL11A2 33154.224 6p21.3
    COX7A2 75947.393 6q12
    CPNE5 36708.555 6p21.1
    CRISP2 49660.072 6p21-qter
    CRISP3 49695.092 6p12.3
    CSNK2B 31633.657 6p21-p12|6p21.3
    CUL7 43005.356 6p21.1
    CUL9 43149.922 6p21.1
    CYP21A2 31973.348 6p21.3
    DACT2 168707.586 6q27
    DCDC2 24171.984 6p22.1
    DDR1 30851.861 6p21.3
    DEF6 35265.595 6p21.33-p21.1
    DHX16 30620.897 6p21.3
    DLL1 170591.296 6q27
    DSE 116601.283 6q22
    DSP 7541.870 6p24
    DST 56322.787 6p12.1
    DUSP22 292.101 6p25.3
    ECHDC1 127609.859 6q22.33
    ECT2L 139134.309 6q24.1
    EDN1 12290.529 6p24.1
    EEF1E1 8073.595 6p24.3-p25.1
    EFHC1 52285.805 6p12.3
    EHMT2 31847.537 6p21.31
    ENPP1 132129.156 6q22-q23
    ENPP3 131958.442 6q22
    EPM2A 145946.446 6q24
    ESR1 152128.814 6q25.1
    ETV7 36333.972 6p21
    EXOC2 485.139 6p25.3
    EYA4 133562.495 6q23
    EZR 159186.774 6q25.2-q26
    F13A1 6144.312 6p25.3-p24.3
    FABP7 123100.646 6q22-q23
    FAM46A 82455.448 6q14
    FBXO30 146119.274 6q24
    FBXO5 153291.660 6q25.2
    FGD2 36973.423 6p21.2
    FKBP5 35541.362 6p21.3-p21.2
    FKBPL 32096.487 6p21.3
    FLOT1 30695.513 6p21.3
    FNDC1 159590.429 6q25
    FOXC1 1610.681 6p25
    FOXF2 1390.069 6p25.3
    FOXO3B 108985.500 17p11
    FOXP4 41514.164 6p21.1
    FOXQ1 1312.675 6p25
    FRK 116262.693 6q21-q22.3
    FYN 111982.487 6q21
    GABBR1 29570.006 6p21.31
    GCLC 53362.140 6p12
    GJA1 121756.745 6q21-q23.2
    GLO1 38643.704 6p21.3-p21.1
    GLP1R 39016.557 6p21
    GMDS 1624.042 6p25
    GMNN 24775.164 6p22.3
    GNMT 42928.500 6p12
    GOPC 117881.435 6q21
    GPLD1 24428.405 6p22.3-p22.2
    GPX5 28493.789 6p22.1
    GRM1 146348.782 6q24
    GRM4 33989.629 6p21.3
    GSTA1 52656.179 6p12.1
    GSTA2 52614.888 6p12.1
    GSTA3 52761.441 6p12.1
    GSTA4 52842.747 6p12.1
    GTF2H4 30875.977 6p21.3
    GTF2H5 158589.379 6q25.3
    HACE1 105175.968 6q16.3
    HCRP1 42326.529 -
    HECA 139456.249 6q23-q24
    HEY2 126070.732 6q21
    HIST1H1A 26017.261 6p21.3
    HIST1H2AC 26124.373 6p21.3
    HIST1H4I 27107.088 6p21.33
    HLA-A 29910.309 6p21.3
    HLA-B 31321.649 6p21.3
    HLA-C 31236.530 6p21.3
    HLA-DMB 32902.415 6p21.3
    HLA-DOA 32971.962 6p21.3
    HLA-DOB 32780.541 6p21.3
    HLA-DPB1 33043.760 6p21.3
    HLA-DQA1 32605.183 6p21.3
    HLA-DQB1 32627.657 6p21.3
    HLA-DRA 32407.647 6p21.3
    HLA-DRB1 32546.549 6p21.3
    HLA-E 30457.271 6p21.3
    HLA-G 29794.756 6p21.3
    HMGN3 79910.964 6q14.1
    HMGN4 26538.572 6p21.3
    HSD17B8 33172.419 6p21.3
    HSF2 122720.696 6q22.31
    HSP90AB1 44214.849 6p12
    HSPA1A 31783.291 6p21.3
    HSPA1B 31795.512 6p21.3
    HSPA1L 31777.397 6p21.3
    HULC 8652.441 6p24.3
    HUS1B 655.940 6p25.3
    ICK 52866.098 6p12.1
    IFNGR1 137518.621 6q23.3
    IL17A 52051.185 6p12
    IL17F 52101.484 6p12
    IL20RA 137321.109 6q22.33-q23.1
    IP6K3 33689.443 6p21.31
    ITPR3 33589.161 6p21
    IYD 150690.028 6q25.1
    JARID2 15246.527 6p24-p23
    KHDRBS2 62389.865 6q11.1
    KIAA1244 138483.053 6q23.3
    KIF13A 17763.925 6p23
    KIFC1 33359.313 6p21.3
    KPNA5 117002.367 6q22.1
    LAMA2 129204.286 6q22-q23
    LAMA4 112429.134 6q21
    LGSN 63985.857 6pter-q22.33
    LIN28B 105404.923 6q16.3-q21
    LPA 160952.516 6q26
    LST1 31554.977 6p21.3
    LTB 31548.337 6p21.3
    MAD2L1BP 43597.279 6p21.1
    MAK 10762.957 6p24
    MAP3K4 161412.822 6q26
    MAP3K5 136878.188 6q22.33
    MAP7 136663.873 6q23.3
    MAPK14 35995.454 6p21.3-p21.2
    MARCKS 114178.527 6q22.2
    MAS1 160327.974 6q25.3-q26
    MAS1L 29454.545 6p21
    MCM3 52128.812 6p12
    MDC1 30667.585 6p21.3
    MED23 131907.873 6q22.33-q24.1
    MEP1A 46761.094 6p12-p11
    MICA 31371.371 6p21.33
    MICB 31465.855 6p21.3
    MRS2 24403.153 6p22.3-p22.1
    MSH5 31707.725 6p21.3
    MTCH1 36935.917 6pter-p24.1
    MTHFD1L 151186.691 6q25.1
    MYCT1 153019.030 6q25.2
    MYO6 76458.909 6q13
    NCOA7 126112.001 6q22.32
    NCR2 41303.528 6p21.1
    NCR3 31556.660 6p21.3
    NDUFAF4 97337.188 6q16.1
    NEDD9 11183.531 6p25-p24
    NEU1 31826.830 6p21.3
    NFKBIE 44225.903 6p21.1
    NFKBIL1 31515.353 6p21.3
    NFYA 41040.707 6p21.3
    NKAIN2 124125.069 6q21
    NOTCH4 32162.621 6p21.3
    NOX3 155716.503 6q25.1-q26
    NQO2 3000.067 6pter-q12
    NR2E1 108487.215 6q21
    NRN1 5998.235 6p25.1
    NRSN1 24126.414 6p22.3
    NT5E 86159.302 6q14-q21
    NUP153 17615.269 6p22.3
    OPRM1 154360.443 6q24-q25
    ORC3L 88299.843 6q14.3-q16.1
    PACRG 163148.164 6q26
    PARK2 161768.591 6q25.2-q27
    PBOV1 138537.129 6q23-q24
    PBX2 32152.510 6p21.3
    PCMT1 150070.831 6q24-q25
    PDCD2 170886.451 6q27
    PDE10A 165740.779 6q26
    PDE7B 136172.834 6q23-q24
    PDSS2 107473.761 6q21
    PERP 138409.642 6q24
    PEX6 42931.613 6p21.1
    PFDN6 33257.378 6p21.3
    PGC 41708.577 6p21.3-p21.1
    PHF1 33378.773 6p21.3
    PI16 36922.209 6p21.2
    PKIB 122931.377 6q22.31
    PLG 161123.225 6q26
    POU3F2 99282.580 6q16
    POU5F1 31132.115 6p21.31
    PPP1R10 30568.182 6p21.3
    PPP1R11 30034.932 6p21.3
    PPP1R14C 150464.188 6q24.3-q25.3
    PPP1R3G 5085.720 6p25.1
    PPP2R5D 42952.330 6p21.1
    PRDM1 106534.195 6q21-q22.1
    PRICKLE4 41748.500 6p21.31
    PRIM2 57182.422 6p12-p11.1
    PRL 22287.479 6p22.2-p21.3
    PRPF4B 4021.569 6p25.2
    PRPH2 42664.334 6p21.2-p12.3
    PSMB8 32808.497 6p21.3
    PSMB9 32821.938 6p21.3
    PTCRA 42883.727 6p21.3
    PTK7 43044.029 6p21.1-p12.2
    PTP4A1 64281.920 6q12
    PTPRK 128289.925 6q22.2-q22.3
    QKI 163835.675 6q26-q27
    QRSL1 107077.441 6q21
    RAB23 57053.591 6p11
    RAB32 146864.828 6q24.3
    RAB44 36665.627 6p21.31-p21.2
    RAET1E 150209.601 6q25.1
    RANBP9 13621.731 6p23
    RCAN2 46188.469 6p21.1-p12.3
    REPS1 139225.621 -
    REV3L 111620.235 6q21
    RGL2 33259.431 6p21.3
    RGS17 153332.041 6q25.3
    RING1 33176.286 6p21.3
    RIOK1 7390.062 6p24.3
    RIPK1 3077.058 6p25.2
    RIPPLY2 84562.985 6q14.2
    RNF144B 18387.594 6p22.3
    RNF146 127588.020 6q22.1-q22.33
    RNF39 30038.044 6p21.3
    RNF5 32146.162 6p21.3
    RNF8 37321.748 6p21.3
    ROS1 117609.530 6q22
    RPL10A 35436.178 6p21.3-p21.2
    RPS10 34385.233 6p21.31
    RPS12 133135.708 6q23.2
    RPS6KA2 166822.854 6q27
    RRAGD 90074.337 6q15-q16
    RREB1 7108.086 6p25
    RXRB 33161.366 6p21.3
    SASH1 148663.729 6q24.3
    SCGN 25652.429 6p22.3-p22.1
    SEC63 108188.962 6q21
    SENP6 76311.622 6q13-q14.3
    SERINC1 122764.493 6q22.31
    SERPINB6 2948.394 6p25
    SERPINB9 2887.506 6p25
    SESN1 109307.647 6q21
    SFRS18 99847.843 6q16.3
    SFRS3 36562.090 6p21
    SGK1 134490.385 6q23
    SHPRH 146205.947 6q24.3
    SKIV2L 31926.581 6p21
    SLC22A1 160542.863 6q26
    SLC22A16 110745.907 6q22.1|6q21-q22.1
    SLC22A2 160637.793 6q26
    SLC22A3 160769.425 6q26-q27
    SLC29A1 44187.242 6p21.2-p21.1
    SLC2A12 134308.719 6q23.2
    SMPDL3A 123109.971 6q22.31
    SNHG5 86386.797 6q14.3
    SNX3 108532.718 6q21
    SOD2 160102.755 6q25.3
    SPDEF 34505.580 6p21.3
    SRF 43138.920 6p21.1
    SRPK1 35800.812 6p21.3-p21.2
    SRSF3 36564.539 6p21
    SSR1 7281.290 6p24.3
    STK19 31939.646 6p21.3
    STK38 36461.674 6p21
    STL 125229.393 6q22.33
    STX7 132778.663 6q23.1
    SUPT3H 44797.450 6p21.1-p21.3
    SYNE1 152442.823 6q25
    SYNJ2 158402.919 6q25.3
    T 166571.086 6q27
    TAB2 149639.063 6q25.1-q25.3
    TAP1 32812.987 6p21.3
    TAP2 32793.188 6p21.3
    TAPBP 33267.472 6p21.3
    TBC1D7 13305.333 6p24.1
    TBCC 42712.235 6pter-p12.1
    TBP 170863.421 6q27
    TBX18 85444.157 6q14-q15
    TCF21 134210.260 6pter-qter
    TDP2 24650.206 6p22.3-p22.1
    TFAP2B 50786.439 6p12
    TIAM2 155538.097 6q25.2
    TNFRSF21 47199.269 6p21.1-p12.2
    TNXB 32008.932 6p21.3
    TPBG 83073.961 6q14-q15
    TPD52L1 125475.420 6q22-q23
    TPMT 18128.546 6p22.3
    TRAF3IP2 111880.145 6q21
    TRAM2 52362.202 6p21.1-p12
    TRERF1 42192.669 6p21.1-p12.1
    TRIM26 30152.234 6p21.3
    TRIM27 28870.780 6p22
    TSG1 94416.800 6q16.1
    TTBK1 43211.222 6p21.1
    TTK 80714.322 6q13-q21
    TTRAP 24650.206 6p22.3-p22.1
    TUBB2A 3153.904 6p25
    TUBB2B 3224.496 6p25
    TUBB 30688.157 6p21.33
    TXNDC5 7881.754 6p24.3
    UBD 29523.390 6p21.3
    UBE2J1 90036.345 6q15
    ULBP1 150285.143 6q25
    ULBP2 150263.136 6q25
    UNC93A 167704.803 6q27
    UST 149068.271 6q25.1
    UTRN 144612.873 6q24
    VARS2 30881.982 6p21.33
    VEGFA 43737.946 6p12
    VIP 153071.933 6q25
    WASF1 110421.022 6q21-q22
    WRNIP1 2765.666 6p25.2
    WTAP 160148.152 6q25-q27
    XPO5 43490.069 6p21.1
    ZBTB2 151685.251 6q25.1
    ZKSCAN3 28317.691 6p22.1
    ZNF451 56954.828 6p12.1-p11.2
    ZNRD1 30029.036 6p21.3

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedJul 2010Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_6.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2010 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_6.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Jul 16 13:33:19 CEST 2010
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