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Chromosome 9

Chromosome 9 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

t(1;9)(q24;q34)
t(2;9)(p11;p13)
t(3;9)(p13;p13) (ALL; FOXP1 and PAX5; rare):
t(3;9)(q26;p23)
t(5;9)(q33;q22)
t(6;9)(p23;q34)
dic(7;9)(p11-13;p11)
t(7;9)(q11;p13)
t(7;9)(q34;q32)
t(7;9)(q34;q34)
t(8;9)(p12;q33)
t(8;9)(p22;p24)
9p Rearrangements in ALL
del(9q) solely
I(9q) in ALL
t(9;9)(q34;q34)
+9 or trisomy 9
amplified NUP214/ABL1
t(9;11)(p22;q23)
t(9;11)(q34;q23) FBP17/MLL
t(9;11)(p22;p15)
t(9;11)(q34;p15)
t(9;11)(q34;q23) (AF9q34-MLL)
t(9;12)(p24;p13)
dic(9;12)(p13;p13)
t(9;12)(q22;p12)
t(9;12)(q34;p13)
t(9;14)(p13;q32)
t(9;14)(q34;q32)
t(9;17)(q34;q23) ( NHL; - ; rare)
der(9;18)(p10;q10)
dic(9;20)(p11-13;q11)
t(9;21)(p22;q22)
t(9;21)(q34;q22)
t(9;22)(q34;q11) in ALL
t(9;22)(q34;q11) in ANLL
t(9;22)(q34;q11) in CML
t(9;22)(p24;q11.2)
t(9;22)(q34;q11) in treatment related leukemia

Solid Tumors     

t(9;17)(q22;q11)
t(9;15)(q22;q21)
t(9;17)(q22;p13)
t(9;22)(q22;q12)
t(9;17)(q22;q11)
t(9;22)(q22;q12)

Cancer prone diseases     

Cartilage-hair hypoplasia (CHH)
Diaphyseal Medullary Stenosis with Malignant Fibrous Histiocytoma (DMS-MFH)
Familial melanoma
Melanoma-Astrocytoma syndrome
Naevoid basal cell carcinoma syndrome (NBCS)
Tuberous Sclerosis (TSC)

All Genes by Location (Kb)
Chromosome 9 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 9 - HUGO Chromosomes
  • Chromosome 9 - GoldenPath - Santa Cruz
  • Chromosome 9 - Ensembl Project
  • Chromosome 9 - Map View - NCBI
  • Chromosome 9 - GDB (Genome Data Base)
  • Chromosome 9 - OMIM Gene map
  • Chromosome 9 - Genomic Variants
  • Chromosome 9 - HAPMAP Project
  • Chromosome 9 - Genome Channel - ORNL
  • Chromosome 9 - LaunchPad HGMIS
  • Chromosome 9 - Human Protein Atlas
  • Chromosome 9 - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    SymbolLocation (Kb)Location (pter-qter)
    ABL1 132579.089 9q34.1
    CDKN2A 21957.752 9p21
    DAB2IP 123544.885 9q33.1-q33.3
    FANCC 96901.159 9q22.3
    FANCG 35063.835 9p13
    FNBP1 131689.287 9q34
    JAK2 4975.245 9p24
    JMJD2C 6747.654 9p24.1
    MLLT3 20334.968 9p22
    NOTCH1 138508.717 9q34.3
    NR4A3 101623.958 9q22
    NTRK2 86473.286 9q22.1
    NUP214 132990.802 9q34.1
    PAX5 36828.531 9p13
    PRRX2 131467.741 9q34.1
    PSIP1 15454.066 9p22.3
    PTCH1 97245.085 9q22.3
    RMRP 5289.868 9p21-p12
    SET 130491.682 9q34
    SYK 92603.891 9q22
    TAL2 107464.599 9q32
    TNC 116822.626 9q33
    TSC1 134776.208 9q34
    XPA 99477.012 9q22.3
    Other genes
    possibly implicated
    in cancer
    SymbolLocation (Kb)Location (pter-qter)
    ABO 135120.384 9q34.1-q34.2
    ACO1 32374.658 9p22-q32|9p21.1
    ADAMTS13 135276.941 9q34
    ADAMTSL1 18464.104 9p22.2-p22.1
    ADFP 19105.760 9p22.1
    AGPAT2 138687.416 9q34.3
    AK1 129668.580 9q34.1
    AK3 4701.158 9p24.1-p24.3
    ALDH1A1 74705.408 9q21.13
    ALDH1B1 38382.702 9p11.1
    ALDOB 103223.480 9q21.3-q22.2
    AMBP 115862.231 9q32-q33
    ANGPTL2 128889.449 9q34
    ANP32B 99785.310 9q22.32
    ANXA1 74956.601 9q12-q21.2|9q12-q21.2
    APTX 32962.609 9p13.3
    AQP3 33431.162 9p13
    ASS1 132309.915 9q34.1
    ASTN2 118227.328 9q33.1
    B4GALT1 33100.642 9p13
    BAG1 33242.470 9p12
    BICD2 94513.467 9q22.31
    BRD3 135887.784 9q34
    C9orf100 35649.341 9p13.3
    C9orf102 97677.721 9q22.32
    C9orf127 35819.513 9p13.3
    C9orf14 27235.683 9p21
    C9orf78 131629.386 9q34.11
    C9orf86 138822.195 9q34.3
    CA9 35663.915 9p13-p12
    CARD9 138378.229 9q34.3
    CCL19 34679.569 9p13
    CCL21 34699.004 9p13
    CCL27 34651.893 9p13
    CCRK 89771.181 9q22.1
    CD274 5440.559 9p24
    CD72 35599.976 9p13.3
    CDC14B 98302.218 9q22.33
    CDK5RAP2 122190.969 9q33.2
    CDK9 129588.158 9q34.1
    CDKN2B 21992.906 9p21
    CEL 134927.186 9q34.3
    CELP 134947.746 9q34.3
    CEP110 122890.395 9q33-q34
    CIZ1 129968.166 9q34.1
    CKS2 91115.933 9q22
    COBRA1 139269.768 9q34
    COX1 21792.635 -
    CRAC1 21471.067 15q13-q21
    CTNNAL1 110744.672 9q31.2
    CTSL1 89530.794 9q21-q22
    CTSL2 98834.761 9q22.2
    DAPK1 89302.576 9q34.1
    DBC1 120968.729 9q32-q33
    DDX31 134503.071 9q34.13
    DDX58 32445.301 9p12
    DEC1 116943.918 9q32
    DIRAS2 92411.934 9q22.2
    DNAJA1 33015.209 9p13-p12
    DNAJB5 34979.785 9p13.3
    DNM1 130005.484 9q34
    ECM2 94297.420 9q22.3
    EDF1 138877.054 9q34.3
    EDG2 112675.877 9q31.3
    EDG3 90796.182 9q22.1-q22.2
    ENDOG 130620.600 9q34.1
    ENG 129617.117 9q33-q34.1
    EPB41L4B 110974.076 9q31-q32
    FBP1 96405.238 9q22.3
    FBP2 96360.826 9q22.3
    FBXW2 122559.075 9q34
    FOXB2 78824.391 9q21.13
    FOXD4 106.235 9p11-q11
    FOXD4L3 70107.603 9q21.11
    FOXD4L4 69666.445 9q12
    FOXE1 99655.358 9q22
    FPGS 129604.975 9q34.1
    FRA11B 70840.164 11q23.3
    FRA11F 70840.164 11q14.2
    FRA6E 70840.164 6q26
    FRA6F 70840.164 6q21
    FRA9E 70840.164 9q32
    FRMD3 85052.127 9q21.32
    FXN 70840.164 9q13-q21.1
    GADD45G 91409.748 9q22.1-q22.2
    GALNT12 100609.802 9q22.33
    GALT 34636.635 9p13
    GAS1 88749.099 9q21.3-q22
    GCNT1 78246.402 9q13
    GDA 73954.113 9q21.13
    GFI1B 134843.919 9q34.13
    GGTA1 123257.139 9q33.2-q34.11
    GNA14 79228.369 9q21
    GNAQ 79525.020 9q21
    GNE 36204.441 9p13.3
    GNG10 113463.682 9q31.3
    GOLM1 87830.880 9q21.33
    GPSM1 138348.726 9q34.3
    GRHPR 37412.707 9q12
    GRIN1 139153.430 9q34.3
    GSN 123070.201 9q33
    HEMGN 99728.896 9q22.33
    HNRPK 85772.912 9q21.32-q21.33
    HSPA5 127036.955 9q33-q34.1
    IER5L 130977.652 9q34.11
    IFNA1 21430.440 9p22
    IFNA13 21357.424 9p22
    IFNA17 21217.242 9p22
    IFNB1 21067.105 9p21
    IGFBPL1 38398.992 9p13.1
    IKBKAP 110669.622 9q31
    IL11RA 34643.932 9p13
    INPP5E 138442.893 9q34.3
    INSL4 5221.419 9p24
    JBS 4975.245 11q24.1
    KANK1 696.896 9p24.3
    KIAA0649 137511.469 9q34.3
    KLF4 109286.956 9q31
    LAMC3 132874.325 9q31-q34
    LCN2 129951.553 9q34
    LCO 129951.171 2q14-q21
    LHX3 138227.919 9q34.3
    LHX6 124004.679 9q33.2
    MAGEB17 139315.857 Xp22.2
    MAN1B1 139101.200 9q34
    MAPKAP1 127323.572 9q33.3
    MELK 36562.905 9p13.2
    MLANA 5880.909 9p24.1
    MRPL41 139566.165 9q34.3
    MTAP 21792.635 9p21
    MUSK 112470.960 9q31.3-q32
    NANS 99858.842 9p24.1-p23
    NEK6 126060.070 9q33.3-q34.11
    NFIB 14071.848 9p24.1
    NINJ1 94923.592 9q22
    NOXA1 139437.668 9q34.3
    NPDC1 139053.744 9q34.3
    NPR2 35782.406 9p21-p12
    NR5A1 126283.337 9q33
    NR6A1 126324.524 9q33-q34.1
    NUDT2 34319.504 9p13
    OGN 94186.070 9q22
    OMD 94216.359 9q22.31
    OPRS1 34624.720 9p13.3
    ORM1 116125.157 9q31-q32
    ORM2 116131.890 9q32
    PAEP 137593.425 9q34
    PAPPA 117955.892 9q33.2
    PBX3 127549.487 9q33-q34
    PCA3 78569.171 9q21-q22
    PDCD1LG2 5500.570 9p24.2
    PHF19 122657.752 9q33.2
    PIGO 35078.690 9p13.3
    PIP5K1B 70510.436 9q13
    PIP5KL1 129723.631 9q34.11
    PKN3 130504.623 9q34.11
    PLAA 26894.518 9p21
    POLE3 115209.342 9q33
    PPP2R4 130913.434 9q34
    PPP3R2 103393.720 9q31.1
    PPP6C 126951.230 9q33.3
    PRKACG 70817.271 9q13
    PRSS3 33785.559 9p11.2
    PRUNE2 78628.003 9q21.13
    PSAT1 80101.879 9q21.2
    PTENP1 33665.634 9p21
    PTGDS 138991.777 9q34.2-q34.3
    PTGES 131540.433 9q34.3
    PTGS1 124173.050 9q32-q33.3
    PTPN3 111180.339 9q31
    PTPRD 8304.247 9p23-p24.3
    RAB14 122980.237 9q32-q34.11
    RAB1C 37626.933 9p13.2
    RAB7B 21471.067 1q32
    RAD23B 109085.365 9q31.2
    RALGDS 134962.929 9q34.3
    RALGPS1 128716.874 9q33.3
    RAPGEF1 133441.979 9q34.3
    RASEF 84787.137 9q21.32
    RECK 36026.916 9p13-p12
    RGS3 115382.761 9q32
    RLN1 5324.969 9p24.1
    RLN2 5289.868 9p24.1
    RMI1 85785.457 9q21.32
    RNF20 103335.954 9q22
    RNF38 36326.401 9p13
    ROR2 93524.705 9q22
    RORB 76302.072 9q22
    RPL7A 135204.890 9q34
    RPS6 19366.254 9p21
    RXRA 136358.231 9q34.3
    SDCCAG3 138416.196 9q34.3
    SEC61B 101024.391 9q22.32-q31.3
    SEMA4D 91181.972 9q22-q31
    SETX 134126.649 9q34.13
    SH2D3C 129540.419 9q34.11
    SH3GL2 17569.194 9p22
    SHC3 90817.889 9q22.1
    SLC1A1 4480.444 9p24
    SLC35D2 98122.810 9q22.32
    SMARCA2 2005.342 9p22.3
    SMC2 105896.362 9q31.1
    SMC5 72063.698 9q21.11
    SPIN1 90193.117 9q22.1-q22.3
    STOML2 35089.893 9p13.1
    SURF1 135208.487 9q34.2
    TAF1L 32619.452 9p21.1
    TEK 27099.286 9p21
    TESK1 35595.281 9p13
    TGFBR1 100907.233 9q22
    TJP2 70978.909 9q13-q21
    TLE1 83388.420 9q21.32
    TLN1 35687.334 9p13
    TLR4 119506.431 9q32-q33
    TMEFF1 102275.538 9q31
    TMOD1 99326.258 9q22.3
    TNFSF15 116591.434 9q32
    TNFSF8 116704.945 9q33
    TOPORS 32530.543 9p21
    TPD52L3 6318.375 9p24.1
    TRAF1 122704.493 9q33-q34
    TRAF2 138900.786 9q34
    TRIM32 118489.402 9q33.1
    TRPM6 76527.231 9q21.13
    TTF1 134240.760 9q34.13
    TTIM1 134240.756 7p12-cen
    TUBB2C 139255.532 9q34
    TUSC1 25666.394 9p21.2
    TXN 112046.131 9q31
    TYRP1 12683.449 9p23
    UBAP1 34169.011 9p13.3
    UBE2R2 33807.182 9p13.3
    UGCG 113699.027 9q31
    UHRF2 6403.151 9p24.1
    VAV2 135616.838 9q34.1
    VCP 35046.561 9p13.3
    WNK2 94987.033 9q22.3
    psMAGEA 124328.458 Xq28

    GeneCards   GDB - List of genes

    This page should be referenced as such :
    Dessen P, Knuutila S, Huret JL Chromosome 9. Atlas Genet Cytogenet Oncol Haematol. 2002.
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_9.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri May 16 20:24:09 2008
    Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

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