Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 9

Chromosome 9 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 9 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

t(1;9)(q24;q34)
t(2;9)(p11;p13)
t(3;9)(p13;p13) (ALL; FOXP1 and PAX5; rare):
t(3;9)(q26;p23)
t(3;9)(q27;p24)
ins(9;4)(q33;q12q25)
t(5;9)(q33;q22)
t(6;9)(p23;q34)
dic(7;9)(p11-13;p11)
t(7;9)(q11;p13)
t(7;9)(q34;q32)
t(7;9)(q34;q34)
t(8;9)(p12;q33)
t(8;9)(p22;p24)
t(8;9)(q24;q13)
9p Rearrangements in ALL
del(9q) solely
I(9q) in ALL
t(9;9)(q34;q34)
+9 or trisomy 9
amplified NUP214/ABL1
t(9;11)(q34;q23) FBP17/MLL
t(9;11)(p22;p15)
t(9;11)(q34;p15)
t(9;11)(q34;q23) (AF9q34-MLL)
t(9;11)(p22;q23)
t(9;12)(p24;p13)
dic(9;12)(p13;p13)
t(9;12)(q22;p12)
t(9;12)(q34;p13)
t(9;14)(p13;q32)
t(9;14)(q34;q32)
t(9;17)(q34;q23) ( NHL; - ; rare)
der(9;18)(p10;q10)
t(9;21)(p22;q22)
t(9;21)(q34;q22)
t(9;22)(q34;q11) in ALL
t(9;22)(q34;q11) in ANLL
t(9;22)(q34;q11) in CML
t(9;22)(p24;q11.2)
t(9;22)(q34;q11) in treatment related leukemia

Solid Tumors     

t(9;17)(q22;q11)
t(9;15)(q22;q21)
t(9;17)(q22;p13)
t(9;22)(q22;q12)
t(9;17)(q22;q11)
t(9;22)(q22;q12)

Cancer prone diseases     

Cartilage-hair hypoplasia (CHH)
Diaphyseal medullary stenosis with malignant fibrous histiocytoma (DMS-MFH)
Familial melanoma
Melanoma-Astrocytoma syndrome
Multiple self-healing squamous epithelioma
Naevoid basal cell carcinoma syndrome (NBCS)
Tuberous sclerosis (TSC)

All Genes by Location (Kb)
Chromosome 9 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 9 - HUGO Chromosomes
  • Chromosome 9 - GoldenPath - Santa Cruz
  • Chromosome 9 - Ensembl Project
  • Chromosome 9 - Map View - NCBI
  • Chromosome 9 - OMIM Gene map
  • Chromosome 9 - Genomic Variants
  • Chromosome 9 - HAPMAP Project
  • Chromosome 9 - Genome Channel - ORNL
  • Chromosome 9 - LaunchPad HGMIS
  • Chromosome 9 - Human Protein Atlas
  • Chromosome 9 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 9 - Human BAC Resource (NCBI)
  • Chromosome 9 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 9 Cancer GeneWeb
  • Chromosome 9 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABL1 133710.831 9q34.1
    ALDOB 104182.842 9q21.3-q22.2
    ANXA1 75766.781 9q12-q21.2|9q12-q21.2
    BAG1 33252.472 9p12
    CDKN2A 21967.752 9p21
    CKS2 91926.113 9q22
    CTSL1 90340.974 9q21-q22
    DAB2IP 124329.399 9q33.1-q33.3
    DAPK1 90112.756 9q34.1
    FANCC 97861.338 9q22.3
    FANCG 35073.835 9p13
    FNBP1 132649.466 9q34
    FOXE1 100615.537 9q22
    HNRNPK 86582.999 9q21.32-q21.33
    HSPA5 127997.127 9q33-q34.1
    JAK2 4985.245 9p24
    KDM4C 6757.641 9p24.1
    KLF4 110247.135 9q31
    LPAR1 113636.056 hs6M1-18
    MIR7-1 86584.663 9q21.32
    MLLT3 20344.968 9p22
    NOTCH1 139388.897 9q34.3
    NR4A3 102584.137 9q22
    NTRK2 87284.626 9q22.1
    NUP214 134000.981 9q34.1
    PAX5 36838.531 9p13
    PPP2R4 131873.244 9q34
    PRRX2 132427.920 9q34.1
    PSIP1 15464.066 9p22.3
    PTCH1 98205.266 9q22.3
    PTPRD 8314.247 9p23-p24.3
    RLN2 5299.868 9p24.1
    RMRP 35657.750 9p21-p12
    SEMA4D 91975.706 9q22.2
    SET 131445.934 9q34
    SH3GL2 17578.953 9p22
    STOML2 35099.893 9p13.1
    SYK 93564.012 9q22
    TAL2 108424.738 9q32
    TEK 27109.147 9p21
    TJP2 71736.224 9q13-q21
    TNC 117782.806 9q33
    TNFSF15 117551.613 9q32
    TOPORS 32540.543 9p21
    TSC1 135766.735 9q34
    TXN 113006.310 9q31
    WNK2 95947.212 9q22.3
    XPA 100437.192 9q22.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCA1 107543.285 9q31.1
    ABO 136130.563 9q34.1-q34.2
    ACO1 32384.601 9p22-q32|9p21.1
    ADAMTS13 136287.120 9q34
    ADAMTSL1 18474.104 9p22.2-p22.1
    AGPAT2 139567.595 9q34.3
    AK1 130628.761 9q34.1
    AK3 4711.158 9p24.1-p24.3
    ALDH1A1 75515.588 9q21.13
    ALDH1B1 38392.702 9p11.1
    ALG2 101978.708 9q22.33
    AMBP 116822.410 9q32-q33
    ANGPTL2 129849.628 9q34
    ANP32B 100745.489 9q22.32
    APTX 32972.609 9p13.3
    AQP3 33441.162 9p13
    ASPN 95218.489 9q22
    ASS1 133320.094 9q34.1
    ASTN2 119187.507 9q33.1
    B4GALT1 33110.639 9p13
    BICD2 95473.645 9q22.31
    BNC2 16409.502 9p22.3-p22.2
    BRD3 136895.454 9q34
    C5 123714.616 9q33-q34
    C9orf100 35659.341 9p13.3
    C9orf102 98637.900 9q22.32
    C9orf78 132589.565 9q34.11
    C9orf80 115448.793 9q32
    C9orf86 139702.374 9q34.3
    CA9 35673.915 9p13-p12
    CARD9 139258.408 9q34.3
    CCL19 34689.569 9p13
    CCL21 34709.004 9p13
    CCL27 34661.893 9p13
    CD274 5450.503 9p24
    CD72 35609.976 9p13.3
    CDC14B 99262.397 9q22.32-q22.33
    CDK20 90581.361 9q22.1
    CDK5RAP2 123151.148 9q33.2
    CDK9 130548.305 9q34.1
    CDKN2B 22002.906 9p21
    CEL 135937.365 9q34.3
    CEP110 123850.574 9q33-q34
    CHMP5 33264.877 9p13.3
    CIZ1 130928.345 9q34.1
    CNTFR 34551.431 9p13
    COBRA1 140149.759 9q34
    CTNNAL1 111704.851 9q31.2
    CTSL2 99794.940 9q22.2
    DBC1 121928.908 9q32-q33
    DCAF12 34086.381 9p13.3
    DDX31 135469.676 9q34.13
    DDX58 32455.301 9p12
    DEC1 117904.097 9q32
    DFNB31 117164.361 9q32-q34
    DIRAS2 93372.114 9q22.2
    DMRT1 841.690 9p24.3
    DNAJA1 33025.209 9p13-p12
    DNAJB5 34989.725 9p13.3
    DNM1 130965.663 9q34
    DOCK8 214.865 9p24.3
    ECM2 95257.599 9q22.3
    EDF1 139756.571 9q34.3
    EGFL7 139557.382 9q34.3
    EHMT1 140513.444 9q34.3
    ELAVL2 23690.105 9p21
    ENDOG 131580.779 9q34.1
    ENG 130577.292 9q33-q34.1
    EPB41L4B 112002.014 9q31-q32
    FAM120A 96214.173 9q22.31
    FAM129B 130267.619 9q33.3-q34.11
    FBP1 97365.423 9q22.3
    FBP2 97321.005 9q22.3
    FBXW2 123519.254 9q34
    FOXB2 79634.571 9q21.2
    FOXD4 116.235 9p24.3
    FOXD4L3 70917.783 9q21.11
    FOXD4L4 42717.234 9q21.11
    FPGS 130565.508 9q34.1
    FRMD3 85862.307 9q21.32
    FUBP3 133454.960 9q34.11-q34.12
    FXN 71650.479 9q13-q21.1
    GADD45G 92219.927 9q22.1-q22.2
    GALNT12 101569.981 9q22.33
    GALT 34646.635 9p13
    GAS1 89559.279 9q21.3-q22
    GCNT1 79074.068 9q13
    GDA 74764.293 9q21.13
    GFI1B 135854.098 9q34.13
    GGTA1 124217.318 9q33.2-q34.11
    GNA14 80037.996 9q21
    GNAQ 80335.200 9q21
    GNE 36214.441 9p13.3
    GNG10 114423.861 9q31.3
    GOLM1 88641.060 9q21.33
    GPSM1 139221.932 9q34.3
    GRHPR 37422.707 9q12
    GRIN1 140033.609 9q34.3
    GSN 124062.079 9q33
    HEMGN 100689.075 9q22.33
    IER5L 131937.831 9q34.11
    IFNA13 21367.371 9p22
    IFNA17 21227.242 9p22
    IFNA1 21440.440 9p22
    IFNA2 21384.255 9p22
    IFNB1 21077.105 9p21
    IFNK 27524.312 -
    IGFBPL1 38408.992 9p13.1
    IKBKAP 111629.801 9q31
    IL11RA 34652.182 9p13
    IL33 6241.678 9p24.1
    INPP5E 139323.075 9q34.3
    INSL4 5231.419 9p24
    KANK1 504.703 9p24.3
    KIAA0649 138371.648 9q34.3
    KLF9 72999.515 9q13
    LAMC3 133884.504 9q31-q34
    LCN2 130911.732 9q34
    LHX3 139088.098 9q34.3
    LHX6 124964.860 9q33.2
    LRRC26 140063.212 9q34.3
    MAN1B1 139981.417 9q34
    MAPKAP1 128199.674 9q33.3
    MELK 36572.905 9p13.2
    MLANA 5890.909 9p24.1
    MRPL41 140446.309 9q34.3
    MTAP 21802.635 9p21
    MURC 103340.336 9q31.1
    MUSK 113431.051 9q31.3-q32
    NANS 100818.959 9p24.1-p23
    NCRNA00032 27245.683 9p21
    NEK6 127020.196 9q33.3-q34.11
    NFIB 14081.848 9p24.1
    NINJ1 95883.772 9q22
    NOXA1 140317.847 9q34.3
    NPDC1 139933.909 9q34.3
    NPR2 35792.406 9p21-p12
    NR5A1 127243.515 9q33
    NR6A1 127284.703 9q33-q34.1
    NUDT2 34329.504 9p13
    OGN 95146.251 9q22
    OMD 95176.528 9q22.31
    ORM1 117085.303 9q31-q32
    ORM2 117092.069 9q32
    PAEP 138453.604 9q34
    PAPPA 118916.071 9q33.2
    PBX3 128510.478 9q33-q34
    PCA3 79379.351 9q21-q22
    PDCD1LG2 5510.545 9p24.2
    PHF19 123631.854 9q33.2
    PHF2 96338.909 9q22.31
    PHPT1 139743.256 9q34.3
    PIGO 35088.690 9p13.3
    PIP5K1B 71320.616 9q13
    PIP5KL1 130683.809 9q34.11
    PKN3 131464.802 9q34.11
    PLAA 26903.369 9p21
    PLIN2 19115.760 9p22.1
    POLE3 116169.518 9q33
    POMT1 134378.289 9q34.1
    PPP3R2 104353.899 9q31.1
    PPP6C 127908.853 9q33.3
    PRKACG 71627.456 9q13
    PRSS3 33795.559 9p11.2
    PRUNE2 79226.293 9q21.2
    PSAT1 80912.059 9q21.2
    PSMB7 127115.745 9q34.11-q34.12
    PTENP1 33675.634 9p21
    PTGDS 139871.956 9q34.2-q34.3
    PTGES2 130882.973 9q34.11
    PTGES 132500.616 9q34.3
    PTGS1 125133.229 9q32-q33.3
    PTPN3 112137.974 9q31
    RAB14 123940.416 9q32-q34.11
    RAB1C 37636.933 9p13.2
    RAD23B 110045.544 9q31.2
    RALGDS 135973.108 9q34.3
    RALGPS1 129677.053 9q33.3
    RAPGEF1 134452.158 9q34.3
    RASEF 85597.317 9q21.32
    RECK 36036.910 9p13.3
    RGS3 116226.009 9q32
    RLN1 5334.969 9p24.1
    RMI1 86595.637 9q21.32
    RNF20 104296.133 9q22
    RNF38 36336.401 9p13
    ROD1 114980.715 9q32
    ROR2 94484.884 9q22
    RORB 77112.252 9q22
    RPL7A 136215.069 9q34
    RPS6 19376.254 9p21
    RXRA 137218.316 9q34.3
    S1PR3 91606.362 9q22.1-q22.2
    SCAI 127704.888 9q33.3
    SDCCAG3 139296.375 9q34.3
    SEC61B 101984.570 9q22.32-q31.3
    SETX 135136.828 9q34.13
    SH2D3C 130500.597 9q34.11
    SHC3 91628.047 9q22.1
    SIGMAR1 34634.720 9p13.3
    SLC1A1 4490.427 9p24
    SLC28A3 86893.092 9q22.2
    SLC2A6 136336.217 9q34
    SLC2A8 130159.465 9q33.3
    SLC31A1 115983.808 9q31-q32
    SLC31A2 115913.238 9q31-q32
    SLC35D2 99082.989 9q22.32
    SLC44A1 108006.929 9q31.2
    SLC46A2 115641.201 9q32
    SMARCA2 2015.342 9p22.3
    SMC2 106856.831 9q31.1
    SMC5 72873.878 9q21.12
    SPIN1 91003.297 9q22.1-q22.3
    SPTAN1 131314.866 9q33-q34
    STX17 102668.915 9q31.1
    SURF1 136218.666 9q34.2
    TAF1L 32629.452 9p21.1
    TESK1 35605.281 9p13
    TGFBR1 101867.412 9q22
    TLE1 84198.600 9q21.32
    TLN1 35697.334 9p13
    TLR4 120466.460 9q32-q33
    TMEFF1 103235.717 9q31
    TMEM8B 35829.229 9p13.3
    TMOD1 100263.462 9q22.3
    TNFSF8 117665.124 9q33
    TPD52L3 6328.349 9p24.1
    TPM2 35682.924 9p13.2-p13.1
    TRAF1 123664.672 9q33-q34
    TRAF2 139780.965 9q34
    TRIM32 119449.581 9q33.1
    TRPM6 77337.411 9q21.13
    TTF1 135250.939 9q34.13
    TUBB2C 140135.711 9q34
    TUSC1 25676.394 9p21.2
    TYRP1 12693.386 9p23
    UBAP1 34179.003 9p13.3
    UBE2R2 33817.182 9p13.3
    UGCG 114659.206 9q31
    UHRF2 6413.151 9p24.1
    VAV2 136627.017 9q34.1
    VCP 35056.065 9p13.3
    WDR5 137001.210 9q34

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    UpdatedJul 2010Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_9.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2010 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_9.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Jul 16 13:33:20 CEST 2010
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