Atlas of Genetics and Cytogenetics in Oncology and Haematology

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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

Chromosome X

Chromosome X : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

idic(X)(q13)
t(X;2)(q11;p23)
t(X;6)(p11;q23)
t(X;10)(p10;p10)
t(X;11)(q13;q23)
t(X;11)(q21;q23)
t(X;11)(q24;q23) (AML; SEPT6 and MLL; rare)
t(X;14)(q28;q11) (CLD; MTCP1 and TRA-D; rare)
t(X;20)(q13;q13.3)
t(X;21)(q26;q22) (AML; ELF4 and ERG; rare)
t(X;21)(p22;q22)

Solid Tumors     

inv(X)(p11;q12)
t(X;1)(p11;q21)
t(X;17)(p11;q25)
t(X;17)(p11;q25)
t(X;17)(p11.2;q23)
t(X;17)(p11;q25)
(X;18)(p11;q11)
t(X;18)(p11.2;q11.2)
t(X;20)(p11;q13)

Cancer prone diseases     

Bruton's agammaglobulinemia
Simpson-Golabi-Behmel Syndrome

All Genes by Location (Kb)
Chromosome X by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome X - HUGO Chromosomes
  • Chromosome X - GoldenPath - Santa Cruz
  • Chromosome X - Ensembl Project
  • Chromosome X - Map View - NCBI
  • Chromosome X - GDB (Genome Data Base)
  • Chromosome X - OMIM Gene map
  • Chromosome X - Genomic Variants
  • Chromosome X - HAPMAP Project
  • Chromosome X - Genome Channel - ORNL
  • Chromosome X - LaunchPad HGMIS
  • Chromosome X - Human Protein Atlas
  • Chromosome X - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    SymbolLocation (Kb)Location (pter-qter)
    AR 66705.408 Xq11.2-q12
    ARMCX1 100692.170 Xq21.33-q22.2
    ARMCX2 100796.926 Xq21.33-q22.2
    ARMCX3 100764.776 Xq21.33-q22.2
    BRWD3 79818.339 Xq21.1
    CXCR3 70752.492 Xq13
    DKC1 153644.344 Xq28
    FOXO4 70232.751 Xq13.1
    GATA1 48529.906 Xp11.23
    GPC3 132497.444 Xq26.1
    MSN 64804.236 Xq11.2-q12
    MTCP1 153943.096 Xq28
    NONO 70420.192 Xq13.1
    SEPT6 118634.937 Xq24
    SEPT9 77414.787 17q25
    SSX2 52797.033 Xp11.23-p11.22
    TFE3 48771.186 Xp11.22
    Other genes
    possibly implicated
    in cancer
    SymbolLocation (Kb)Location (pter-qter)
    ACE2 15489.077 Xp22
    ACOT9 23631.699 Xp22.11
    ACSL4 108771.222 Xq22.3-q23
    AGTR2 115215.986 Xq22-q23
    AKAP14 118913.964 Xq24
    AKAP4 49842.175 Xp11.2
    AMELX 11221.454 Xp22.31-p22.1
    AMMECR1 109324.071 Xq22.3
    AMOT 111904.762 Xq23
    APEX2 55043.505 Xp11.21
    APLN 128607.007 Xq25-q26.3
    ARAF 47305.522 Xp11.4-p11.2
    ARAFPS 47305.451 7p12-q11.21
    ARD1A 152848.571 Xq28
    ARHGAP4 152826.025 Xq28
    ARHGAP6 11071.438 Xp22.3
    ARHGEF6 135575.377 Xq26
    ARHGEF9 62771.573 Xq11.1
    ARSD 2841.655 Xp22.3
    ARX 24932.214 Xp21
    ASMTL 1482.032 Xp22.3; Yp11.3
    ATG4A 107221.590 Xq22.1-q22.3
    ATP6AP1 153310.172 Xq28
    ATP7A 77052.876 Xq13.2-q13.3
    ATRX 76647.012 Xq13.1-q21.1
    AVPR2 152823.564 Xq28
    BCOR 39816.124 Xp21.2-p11.4
    BCORL1 128944.350 Xq25-q26.1
    BEX2 102450.931 Xq22
    BGN 152413.605 Xq28
    BMP15 50670.524 Xp11.2
    BMX 15428.821 Xp22.2
    BRAFPS2 35967.054 Xq13.3
    BRS3 135397.791 Xq26-q28
    BTK 100491.098 Xq21.33-q22
    BZX 53417.795 Xq24-q27
    CASK 41264.288 Xp11.4
    CCNB3 50044.280 Xp11
    CD40LG 135558.002 Xq26
    CD99L2 149685.468 Xq28
    CDKL5 18353.646 Xp22
    CETN2 151746.529 Xq28
    CHIC1 72699.709 Xq13-q21
    CHM 85002.842 Xq21.2
    CITED1 71438.227 Xq13.1
    CLCN4 10084.985 Xp22.3
    CLDN2 106050.290 Xq22.3-q23
    CMM4 154339.769 1p22
    COL4A5 107569.810 Xq22
    COL4A6 107285.493 Xq22
    COX7B 77041.617 Xq21.1
    CSAG1 151653.884 Xq28
    CSAG2 151678.390 Xq28
    CT45-4 134756.364 Xq26.3
    CT45-6 134790.882 Xq26.3
    CT47.13 119890.485 Xq24
    CT47.7 119914.818 Xq24
    CT47.8 119914.818 Xq24
    CTAG1A 153499.060 -
    CTAG1B 153499.060 Xq28
    CTAG2 153533.446 Xq28
    CTPS2 16516.045 Xp22
    CUL4B 119542.474 Xq23
    CXorf28 3199.861 Xp22.33
    CXorf29 30762.661 Xp21.2
    CXorf31 46631.799 Xp11.3
    CYBB 37524.264 Xp21.1
    CYSLTR1 77414.787 Xq13.2-q21.1
    DACH2 85290.281 Xq21.3
    DCX 110423.664 Xq22.3-q23
    DDX26B 134482.250 Xq26.3
    DDX3X 41077.595 Xp11.3-p11.23
    DDX53 22928.008 Xp22.11
    DIAPH2 95826.365 Xq22
    DLG3 69581.449 Xq13.1
    DMD 31047.266 Xp21.2
    DUSP9 152561.182 Xq28
    EDA 68752.636 Xq12-q13.1
    EDA2R 65732.208 Xq12
    EFNB1 67965.556 Xq12
    EGFL6 13497.662 Xp22
    EIF1AX 20052.558 Xp22.12
    ELF4 129026.586 Xq26
    ELK1 47379.865 Xp11.2
    ELK2P1 47379.864 14q32.3
    ENOX2 129585.040 Xq25-q26.2
    ERAS 48572.227 Xp11.23
    ERCC6L 71341.232 Xq13.1
    F8 153717.264 Xq28
    FAM123B 63321.722 Xq11.1
    FANCB 14771.450 Xp22.2
    FGD1 54488.614 Xp11.21
    FGF13 137541.402 Xq26.3
    FGF16 76596.303 Xq13
    FHL1 135057.346 Xq26
    FIGF 15273.640 Xp22.31
    FIM1 15273.640 6p23-p22.3
    FIM3 15273.640 3q27
    FLNA 153230.091 Xq28
    FOXP3 48994.354 Xp11.23
    FOXR2 55666.558 Xp11.21
    G6PD 153412.800 Xq28
    GAGE1 49250.567 Xp11.4-p11.2
    GAGE12I 49103.621 Xp11.4-p11.2
    GAGE2A 49113.115 Xp11.23
    GAGE3 49223.101 Xp11.4-p11.2
    GAGE4 49103.593 Xp11.4-p11.2
    GAGE5 49103.601 Xp11.4-p11.2
    GAGE6 49221.982 Xp11.4-p11.2
    GAGE8 49103.603 Xp11.23
    GDI1 153318.715 Xq28
    GJB1 70351.787 Xq13.1
    GPC4 132262.730 Xq26.1
    GPR143 9653.454 Xp22.3
    GPR64 18917.346 Xp22.13
    GRIA3 122145.777 Xq25-q26
    GRIPAP1 48718.279 Xp11
    GRPR 16051.345 Xp22.2-p22.13
    GSPT2 51503.267 Xp11.23-p11.21
    GUCY2F 108502.791 Xq22
    HCCS 11039.373 Xp22.3
    HCFC1 152866.204 Xq28
    HDAC6 48545.431 Xp11.23
    HDAC8 71466.092 Xq13
    HDHD1A 6976.961 Xp22.32
    HMGB3 149902.421 Xq28
    HPRT1 133421.923 Xq26.1
    HUWE1 53576.477 Xp11.22
    IKBKG 153428.756 Xq28
    IL13RA2 114144.796 Xq13.1-q28
    IL1RAPL1 28515.480 Xp22.1-p21.3
    IL2RG 70243.984 Xq13.1
    INE1 46949.269 Xp11.4-p11.3
    INGX 70628.255 Xq12
    IRAK1 152929.151 Xq28
    IRS4 107862.370 Xq22.3
    JARID1C 53237.379 Xp11.22-p11.21
    KCTD9L 104536.840 Xq22.3
    KIAA1166 64052.987 Xq11.1
    KIF4A 69426.620 Xq13.1
    KLF8 56275.632 Xp11.21
    L1CAM 152780.581 Xq28
    LAGE3 153358.435 Xq28
    LAMP2 119454.393 Xq24
    LCAP 152799.321 Xq28
    LDOC1 140097.607 Xq27
    LOC170082 13581.228 Xp22.2
    LOC203510 104953.192 Xq23
    LOC286411 139619.597 Xq27.1
    LONRF3 117992.741 Xq24
    LUZP4 114430.548 Xq23
    MAGEA1 152134.716 Xq28
    MAGEA10 151053.565 Xq28
    MAGEA11 148575.479 Xq28
    MAGEA12 151649.952 Xq28
    MAGEA2 151669.044 Xq28
    MAGEA2B 151669.059 Xq28
    MAGEA3 151685.309 Xq28
    MAGEA4 150836.053 Xq28
    MAGEA5 151033.182 Xq28
    MAGEA6 151617.901 Xq28
    MAGEA7 151617.886 Xq28
    MAGEA8 148770.654 Xq28
    MAGEA9 148671.402 Xq28
    MAGEB1 30175.192 Xp21.3
    MAGEB10 27736.046 Xp21.3
    MAGEB16 35726.380 Xp21.1
    MAGEB18 26066.384 Xp21.3
    MAGEB2 30143.601 Xp21.3
    MAGEB3 30158.474 Xp21.3
    MAGEB4 30170.090 Xp21.3
    MAGEB5 26145.340 Xp21.3
    MAGEB6 26120.478 Xp21.3
    MAGEC1 140819.346 Xq26
    MAGEC2 141117.796 Xq27
    MAGEC3 140810.118 Xq27.2
    MAGED1 51653.438 Xp11.23
    MAGED2 54850.896 Xp11.2
    MAGED4 51944.748 Xp11.22
    MAGED4B 51944.659 -
    MAGEE1 75564.521 Xq13.3
    MAGEE2 74919.548 Xq13.3
    MAGEH1 55495.263 Xp11.21
    MAP3K15 19288.095 Xp22.12
    MAP3K7IP3 30755.481 Xp21.2
    MCF2 138491.596 Xq27
    MCTS1 119621.863 Xq22-q24
    MECP2 152940.458 Xq28
    MED14 40393.739 Xp11.4-p11.2
    MIRN378 52841.909 -
    MPP1 153660.162 Xq28
    MTM1 149487.727 Xq28
    MUM1L1 105307.975 Xq22.3
    NAP1L6 72262.600 Xq13.2
    ND4 149487.727 -
    ND5 149487.727 -
    NDUFA1 118889.762 Xq24
    NGFRAP1 102517.924 Xq22.2
    NKRF 118606.335 Xq24
    NOX1 99984.969 Xq22
    NR0B1 30232.507 Xp21.3-p21.2
    NUDT11 51249.603 Xp11.22
    NXF3 102217.408 Xq22-q23
    OCRL 128501.933 Xq25-q26.1
    OTC 38096.680 Xp21.1
    PAGE1 49339.010 Xp11.23
    PAGE4 49480.644 Xp11.23
    PAGE5 55263.516 Xp11.21
    PAK3 110226.256 Xq22.3-q23
    PCTK1 46962.576 Xp11.3-p11.23
    PDHA1 19271.972 Xp22.2-p22.1
    PDK3 24393.475 Xp22.11
    PGK1 77246.425 Xq13
    PGRMC1 118254.291 Xq22-q24
    PHKA2 18820.800 Xp22.2-p22.1
    PIGA 15247.501 Xp22.1
    PIM2 48655.405 Xp11.23
    PIR 15312.847 Xp22.2
    PLAC1 133527.539 Xq26
    POLA1 24621.977 Xp22.1-p21.3
    PPEF1 18618.966 Xp22.2-p22.1
    PPP1R2P9 42521.562 Xp11.4-p11.3
    PPP1R3F 49013.261 Xp11.23
    PRAF2 48815.764 Xp11.23
    PRKX 3532.411 Xp22.3
    PRPS1 106758.415 Xq21.32-q24
    PSMD10 107214.095 Xq22.3
    PYY3 49807.454 Xp11.22
    RAB33A 129133.454 Xq25
    RAB39B 154140.721 Xq28
    RAB40A 102641.338 Xq22.1
    RAB40AL 102078.856 -
    RAB41 69418.793 Xq13.1
    RAB9A 13617.262 Xp22.2
    RAB9B 102966.607 Xq22.1-q22.3
    RAP2C 131164.735 Xq25
    RBBP7 16772.698 Xp22.2
    RBM10 46889.575 Xp11.23
    RBM3 48317.780 Xp11.2
    RBMX 135783.285 Xq26.3
    REPS2 16874.735 Xp22.2
    RNF12 73726.777 Xq13-q21
    RNF128 105856.550 Xq22.3
    RP13-36C9.1 134693.880 Xq26.3
    RP13-36C9.3 134711.154 Xq26.3
    RP13-36C9.6 134773.631 Xq26.3
    RP6-166C19.1 119934.282 Xq24
    RP6-166C19.10 119895.376 Xq24
    RP6-166C19.11 119924.562 Xq24
    RP6-166C19.2 119914.818 Xq24
    RP6-166C19.3 119924.562 Xq24
    RP6-166C19.4 119914.818 Xq24
    RP6-166C19.5 119914.818 Xq24
    RP6-166C19.6 119919.701 Xq24
    RP6-166C19.9 119939.141 Xq24
    RP6-213H19.1 130984.926 Xq26.2
    RPA4 96025.563 Xq21.33
    RPL10 153279.912 Xq28
    RPL36A 100532.604 Xq22.1
    RPS6KA3 20077.951 Xp22.2-p22.1
    RPS6KA6 83205.640 Xq21
    S100G 16578.202 Xp22.2
    SAGE1 134803.451 Xq26
    SAT1 23711.225 Xp22.1
    SCML1 17665.513 Xp22.2-p22.1
    SCML2 18167.355 Xp22
    SH2D1A 123307.831 Xq25-q26
    SH3KBP1 19463.441 Xp22.1-p21.3
    SLC25A5 118486.433 Xq24-q26
    SLC6A14 115481.818 Xq23-q24
    SMARCA1 128408.159 Xq25
    SMC1A 53417.797 Xp11.22-p11.21
    SPANXA1 140505.525 Xq27.1
    SPANXB2 139924.427 Xq27.1
    SPANXC 140163.263 Xq27.1
    SPANXD 140613.234 Xq27.1
    SPANXE 140613.234 Xq27.1
    SPANXN1 144136.799 Xq27
    SRPX 37893.537 Xp21.1
    SSR4 152713.288 Xq28
    SSX1 47999.741 Xp11.23-p11.22
    SSX10 48021.100 Xp11.23
    SSX2B 52797.033 Xp11.22
    SSX3 48092.649 Xp11.23
    SSX4 48146.468 Xp11.23
    SSX4B 48127.912 Xp11.23
    SSX5 47930.600 Xp11.23
    SSX6 47852.032 Xp11.2
    SSX7 52689.836 Xp11.23
    SSX8 52668.903 Xp11.23
    SSX9 48039.829 Xp11.23
    STS 7147.472 Xp22.32
    SUV39H1 48440.075 Xp11.23
    SYP 48931.209 Xp11.23-p11.22
    TAF1 70502.839 Xq13.1
    TAZ 153293.071 Xq28
    TCEAL1 102770.304 Xq22.1
    TCEAL4 102727.075 Xq22.2
    TCEAL7 102471.821 Xq22.1
    TDGF3 109650.195 Xq22.3
    TEX13A 104350.267 Xq22.3
    TGCT1 151750.167 Xq27
    TIMM17B 48635.676 Xp11.23
    TIMM8A 100487.306 Xq22.1
    TIMP1 47326.634 Xp11.3-p11.23
    TKTL1 153177.345 Xq28
    TLR7 12795.123 Xp22.3
    TLR8 12834.679 Xp22
    TMSB4X 12903.148 Xq21.3-q22
    TMSL8 101655.267 Xq21.33-q22.3
    TREX2 152363.373 Xq28
    TRO 54963.974 Xp11.22-p11.21
    TSPAN7 38305.683 Xp11.4
    TSPYL2 53128.287 Xp11.2
    UBA1 46935.204 Xp11.23
    UBE2A 118592.527 Xq24-q25
    UBE2NL 142794.839 Xq27.3
    USP11 46977.258 Xp11.23
    UTP14A 128867.840 Xq25
    UXT 47396.140 Xp11.23-p11.22
    VBP1 154097.744 Xq28
    VENTXP1 26486.374 Xp21.3
    VSIG1 107174.856 Xq22.3
    WAS 48427.153 Xp11.4-p11.21
    XAGE1B 52544.885 Xp11.22
    XAGE1D 52557.781 Xp11.22
    XAGE2 52397.079 Xp11.22
    XAGE3 52908.285 Xp11.22-p11.21
    XAGE5 52857.953 Xp11.22
    XIAP 122821.729 Xq25
    XIST 72959.886 Xq13.2
    XX-FW88277B6.1 134674.851 Xq26.3
    ZBTB33 119268.635 Xq23
    ZDHHC9 128766.596 Xq26.1
    ZIC3 136476.012 Xq26.2
    ZNF185 151833.653 Xq28
    hCG_1644608 83896.661 Xq21.1

    GeneCards   GDB - List of genes

    This page should be referenced as such :
    Dessen P, Knuutila S, Huret JL Chromosome X. Atlas Genet Cytogenet Oncol Haematol. 2002.
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_X.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Tue May 6 18:17:06 2008
    Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

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