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Chromosome 10

Chromosome 10 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 10 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

t(5;10)(q33;q21)
t(7;10)(q34;q24)
t(X;10)(p10;p10)
+10 or trisomy 10 (solely)
t(10;11)(p13;q21)
t(10;11)(p11.2;q23)
t(10;11)(q22;q23)
t(10;11)(q25;p15)
t(10;11)(p12;q23)
t(10;12)(q24;p13)
t(10;14)(q24;q11)
t(10;14)(q24;q11)/NHL (T-ALL; NFKB2 and TCRA-D, not rare)
t(10;14)(q24;q32) (B-NHL; NFKB2 and IGH; rare)
t(10;16)(q22;p13)

Solid Tumors     

inv(10)(q11q11)
inv(10)(q11;q21)
t(10;17)(q11;q23)
t(10;17)(q22;p13)

Cancer prone diseases     

Bannayan-Riley-Ruvalcaba syndrome
Cowden disease
Hereditary breast cancer
Lhermitte-Duclos disease
Proteus syndrome

All Genes by Location (Kb)
Chromosome 10 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 10 - HUGO Chromosomes
  • Chromosome 10 - GoldenPath - Santa Cruz
  • Chromosome 10 - Ensembl Project
  • Chromosome 10 - Map View - NCBI
  • Chromosome 10 - GDB (Genome Data Base)
  • Chromosome 10 - OMIM Gene map
  • Chromosome 10 - Genomic Variants
  • Chromosome 10 - HAPMAP Project
  • Chromosome 10 - Genome Channel - ORNL
  • Chromosome 10 - LaunchPad HGMIS
  • Chromosome 10 - Human Protein Atlas
  • Chromosome 10 - SpliceNest
  • Chromosome 10 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 10 Human BAC Resource (NCBI)
  • Chromosome 10 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 10 Cancer GeneWeb
  • Chromosome 10 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    KLF6 3811.239 10p15
    AKR1C3 5126.568 10p15-p14
    NET1 5444.518 10p15
    MRC1 17891.368 10p12.33
    MLLT10 21863.580 10p12
    BMI1 22650.146 10p11.23
    ABI1 27075.531 10p11.2
    RET 42892.523 10q11.2
    ALOX5 45189.635 10q11.2
    MAPK8 49279.693 10q11.22
    ERCC6 50334.497 10q11.23
    NCOA4 51235.114 10q11.2
    DKK1 53744.047 10q11.2
    CCDC6 61218.527 10q21
    RHOBTB1 62299.206 10q21.2
    AIFM2 71542.036 10q22.1
    PSAP 73246.061 10q21-q22
    MYST4 76256.385 10q22.2
    SNCG 88708.268 10q23.2-q23.3
    PTEN 89613.175 10q23.3
    LGI1 95507.556 10q24
    LOXL4 99997.433 10q24
    PAX2 102495.458 10q24
    BTRC 103103.815 10q24.32
    LDB1 103857.315 10q24-q25
    NFKB2 104144.219 10q24
    ADD3 111757.701 10q24.2-q24.3
    MXI1 111959.979 10q24-q25
    PDCD4 112621.586 10q24
    BAG3 121400.872 10q25.2-q26.2
    FGFR2 123227.834 10q26
    DMBT1 124310.171 10q26.13
    ADAM12 127692.895 10q26.3
    BNIP3 133631.194 10q26.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    GTPBP4 1024.349 10p15-p14
    PFKP 3099.752 10p15.3-p15.2
    AKR1E2 4858.402 10p15.1
    AKR1C1 4995.454 10p15-p14
    AKR1C2 5032.105 10p15-p14
    UCN3 5396.976 10p15.1
    GDI2 5847.192 10p15
    FBXO18 5976.355 10p15.1
    IL15RA 6034.340 10p15-p14
    IL2RA 6093.512 10p15-p14
    RBM17 6171.315 10p15.1
    PFKFB3 6226.849 10p14-p15
    PRKCQ 6509.111 10p15
    ITIH5 7653.374 10p14
    ITIH2 7785.242 10p15
    KIN 7837.373 10p15-p14
    GATA3 8136.673 10p15
    CUGBP2 11246.999 10p13
    CAMK1D 12431.589 10p13
    OPTN 13182.088 10p13
    MCM10 13243.587 10p13
    SEPHS1 13400.087 10p14
    FRMD4A 13725.712 10p13
    HSPA14 14920.267 10p13
    SUV39H2 14960.905 10p13
    DCLRE1C 14988.877 10p13
    OLAH 15125.901 10p13
    NMT2 15187.777 10p13
    ITGA8 15599.094 10p13
    RSU1 16672.623 10p13
    TRDMT1 17224.988 10p15.1
    VIM 17311.304 10p13
    PTPLA 17671.964 10p14-p13
    PLXDC2 20145.378 10p12.31
    DNAJC1 22085.483 10p12.31
    PIP4K2A 22863.772 10p12.2
    ARMC3 23256.960 10p12.31
    MSRB2 23424.433 10p12
    ARHGAP21 24912.544 10p12.1|10p12.3
    PRTFDC1 25177.560 10p12.1
    MYO3A 26263.008 10p11.1
    GAD2 26545.242 10p11.23
    APBB1IP 26767.272 10p12.1
    MASTL 27483.723 10p12.1
    RAB18 27833.255 10p12.1
    BAMBI 29006.430 10p12.3-p11.2
    MAP3K8 30762.872 10p11.23
    ZEB1 31650.070 10p11.2
    ARHGAP12 32135.231 10pter-cen
    KIF5B 32337.944 10pter-q22.1
    EPC1 32597.865 10p11
    ITGB1 33229.252 10p11.2
    NRP1 33526.553 10p12
    PARD3 34440.103 10p11.21
    CUL2 35338.812 10p11.21
    FZD8 35967.183 10p11.21
    ANKRD30A 37454.791 10p11.21
    RASGEF1A 43009.990 10q11.21
    HNRNPF 43201.071 10q11.21-q11.22
    CXCL12 44185.611 10q11.1
    RASSF4 44775.225 10q11.21
    ANXA8L2 47216.926 10q11.22
    ANXA8 47875.231 10q11.22
    GDF2 48033.098 10q11.22
    GDF10 48045.795 10q11.22
    ARHGAP22 49324.085 10q11.22
    PGBD3 50393.250 10q11
    CHAT 50492.089 10q11.2
    PARG 50696.331 10q11.23
    MSMB 51219.559 10q11.2
    TIMM23 51262.094 10q11.21-q11.23
    SGMS1 51735.351 10q11.2
    NPSA 52034.591 -
    PRKG1 52420.951 10q11.2
    CSTF2T 53125.252 10q11
    MBL2 54195.146 10q11.2-q21
    ZWINT 57787.205 10q21-q22
    UBE2D1 59764.745 10q11.2-q21
    ANK3 61458.165 10q21
    CDK1 62208.297 10q21.1
    EGR2 64241.766 10q21.1
    JMJD1C 64596.994 10q21.3
    CTNNA3 67349.731 10q22.2
    DNAJC12 69226.433 10q22.1
    SIRT1 69314.945 10q21.3
    HERC4 69351.662 10q21.3
    MYPN 69539.256 10q21.3
    DNA2 69843.827 10q21.3-q22.1
    TET1 69990.123 10q21
    CCAR1 70150.977 10q21.3
    DDX21 70385.898 10q21
    SUPV3L1 70609.999 10q22.1
    HK1 70748.609 10q22
    NEUROG3 71001.797 10q21.3
    H2AFY2 71482.363 10q22
    NODAL 71861.698 10q22.1
    PRF1 72027.110 10q22
    ADAMTS14 72102.565 10q21
    SGPL1 72245.710 10q21
    UNC5B 72642.304 10q22.1
    ASCC1 73526.284 10pter-q25.3
    DDIT4 73703.683 10pter-q26.12
    DNAJB12 73762.594 10q22.1
    P4HA1 74436.988 10q21.3-q23.1
    DNAJC9 74672.588 10q22.2
    ANXA7 74805.195 10q21.1-q21.2
    PPP3CB 74866.570 10q21-q22
    CAMK2G 75242.265 10q22
    PLAU 75340.868 10q24
    VCL 75427.878 10q22.2
    ADK 75606.450 10q22|10q11-q24
    KCNMA1 78299.368 10q22.3
    DLG5 79220.555 10q23
    RPS24 79463.524 10q22-q23
    ZMIZ1 80498.798 10q22.3
    SFTPA2 80985.614 10q22.3
    SFTPA1 81040.722 10q22.3
    SFTPD 81687.476 10q22.2-q23.1
    ANXA11 81904.860 10q23
    NRG3 83625.050 10q22-q23
    GHITM 85889.165 10q23.1
    RGR 85994.789 10q23
    GRID1 87349.292 10q22
    WAPAL 88184.993 10q23.2
    LDB3 88418.406 10q22.3-q23.2
    BMPR1A 88506.376 10q22.3
    C10orf116 88718.168 10q23.2
    MINPP1 89254.203 10q23
    KILLIN 89608.898 10q23
    ACTA2 90684.813 10q23.3
    FAS 90740.268 10q24.1
    IFIT2 91051.686 10q23-q25
    ANKRD1 92661.837 10q23.31
    PCGF5 92970.349 10q23.32
    HECTD2 93160.076 10q23.32
    PPP1R3C 93378.179 10q23-q24
    TNKS2 93548.131 10q23.3
    BTAF1 93673.716 10q22-q23
    MARCH5 94040.900 10q23.32-q23.33
    IDE 94203.580 10q23-q25
    KIF11 94342.805 10q24.1
    HHEX 94439.661 10q23.33
    CYP26A1 94823.637 10q23-q24
    MYOF 95056.176 10q24
    CEP55 95246.359 10q23.33
    RBP4 95341.583 10q23-q24
    PLCE1 95743.736 10q23
    HELLS 96295.564 10q24.2
    CYP2C18 96433.241 10q24
    CYP2C19 96512.453 10q24.1-q24.3
    CYP2C9 96688.405 10q24
    CYP2C8 96786.519 10q23.33
    BLNK 97941.445 10q23.2-q23.33
    DNTT 98054.075 10q23-q24
    SLIT1 98747.785 10q23.3-q24
    ARHGAP19 98971.920 10q24.1
    FRAT1 99069.012 10q24.1
    FRAT2 99082.244 10q24.1
    PGAM1 99176.017 10q25.3
    MMS19 99208.071 10q24-q25
    ANKRD2 99322.246 10q23.31-q23.32
    PI4K2A 99390.433 10q24
    MARVELD1 99463.471 10q24.2
    SFRP5 99516.498 10q24.1
    HPSE2 100208.867 10q23-q24
    GOT1 101146.618 10q24.1-q25.1
    COX15 101458.495 10q24
    ABCC2 101532.453 10q24
    DNMBP 101625.324 10q24.2
    CPN1 101792.055 10q24.2
    CHUK 101938.114 10q24-q25
    BLOC1S2 102023.703 10q24.31
    SCD 102096.762 10q24.31
    WNT8B 102212.802 10q24
    NDUFB8 102273.487 10q23.2-q23.33
    HIF1AN 102285.631 10q24
    LZTS2 102746.955 10q24
    TLX1 102881.051 10q24
    LBX1 102976.723 10q24
    POLL 103328.629 10q23
    FGF8 103519.877 10q24
    MGEA5 103534.190 10q24.1-q24.3
    PPRC1 103882.777 10q24.32
    NOLC1 103901.923 10q24.32
    PSD 104152.366 10q24
    CUEDC2 104172.992 10q24.32
    ACTR1A 104228.977 10q24.32
    SUFU 104253.754 10q24.32
    TRIM8 104394.242 10q24.3
    ARL3 104423.478 10q23.3
    CYP17A1 104580.278 10q24.3
    AS3MT 104619.200 10q24.32
    NT5C2 104835.930 10q24.32-q24.33
    INA 105026.910 10q24.33
    PCGF6 105052.543 10q24.33
    PDCD11 105146.402 10q24.33
    NEURL 105243.725 10q25.1
    SH3PXD2A 105343.774 10q24.33
    SLK 105717.460 10q24.33
    COL17A1 105781.036 10q24.3
    GSTO1 106004.668 10q25.1
    GSTO2 106018.621 10q25.1
    DUSP5 112247.615 10q25
    SMC3 112317.439 10q25
    ACSL5 114125.946 10q25.1-q25.2
    TCF7L2 114699.999 10q25.3
    CASP7 115429.416 10q25
    DCLRE1A 115584.474 10q25.1
    ADRB1 115793.796 10q24-q26
    C10orf118 115871.964 10q25.3
    VWA2 115989.008 10q25.3
    ABLIM1 116180.859 10q25
    GFRA1 117806.434 10q26.11
    PNLIPRP3 118177.414 10q25.3
    HSPA12A 118420.693 10q26.12
    SLC18A2 118990.706 10q25
    EMX2 119291.946 10q26.1
    PRLHR 120342.906 10q26.13
    NANOS1 120779.218 10q26.11
    EIF3A 120784.531 10q26
    PRDX3 120917.205 10q25-q26
    RGS10 121249.329 10q25
    TIAL1 121322.968 10q
    INPP5F 121475.599 10q26.11
    WDR11 122600.685 10q26
    TACC2 123913.095 10q26
    PLEKHA1 124124.210 10q26.13
    HTRA1 124211.031 10q26.3
    FLJ46361 124506.199 10q26.13
    CUZD1 124581.664 10q26.13
    BUB3 124903.750 10q26
    ZRANB1 126620.682 10q26.13
    CTBP2 126666.408 10q26.13
    MMP21 127445.016 10q26.13
    BCCIP 127502.094 10q26.1
    DHX32 127514.899 10q26.2
    DOCK1 128584.013 10q26.13-q26.3
    PTPRE 129595.315 10q26
    MKI67 129784.914 10q25-qter
    MGMT 131155.444 10q26
    EBF3 131523.537 10q26.3
    GLRX3 131824.653 10q26
    PPP2R2D 133597.950 10q26.3
    INPP5A 134201.343 10q26.3
    KNDC1 134823.961 10q26.3
    VENTX 134901.398 10q26.3
    ADAM8 134925.911 10q26.3
    PAOX 135042.731 10q26.3
    CYP2E1 135190.857 10q24.3-qter
    DUX4 135330.358 4q35

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    Updated Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Mon Mar 8 20:27:43 CET 2010
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