Chromosome 13

Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ENTITIES: by Chromosome band

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Chromosome 13

[previous] 13 13p 13q 13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34 [next]

Band 13q11

chr13:17700000-18900000 (1200 Kb)

Chromosomal abnormalities in band 13q11

Genes in band 13q11 (reference hg38)

External links

References

Chromosomal abnormalities in band 13q11

(click on headers to reorder columns)

Band 1	Band 2	Class	Entity	Partner 1	Links	Topography	Morphology	[PubMed]	[Study]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST139804]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST152092]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST160390]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST165193]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST187241]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU650]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST187241]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU661]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST194785]	bone__NS	Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour__NS		[COSU645]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST222106]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST27257]	central_nervous_system__cerebellum	primitive_neuroectodermal_tumour-medulloblastoma__SHH_subtype
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST27258]	central_nervous_system__cerebellum	primitive_neuroectodermal_tumour-medulloblastoma__SHH_subtype
13q11		Cosmic_SV	del(13)(q11)		Cosmic_SV [COST466812]	pancreas__NS	carcinoma__NS		[COSU382]
		Mitelman	del(13)(q11)		Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
13q11	13q12	Cosmic_SV	del(13)(q11q12)		Cosmic_SV [COST115032]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q12	Cosmic_SV	del(13)(q11q12)		Cosmic_SV [COST222375]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q12	dbCRID	del(13)(q11q12)	NM_015974.2	10907		Developmental Delay	[PubMed]
13q11	13q14	dbCRID	del(13)(q11q14)		10642		Chronic Lymphoblastic Leukemia	[PubMed]
		Mitelman	del(13)(q11q14)		Mitelman (CGAP)		Acute erythroleukemia (FAB type M6)
		Mitelman	del(13)(q11q14)		Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
		Mitelman	del(13)(q11q14)		Mitelman (CGAP)		Acute myeloblastic leukemia without maturation (FAB type M1)
		Mitelman	del(13)(q11q14)		Mitelman (CGAP)		Acute myeloid leukemia, NOS
		Mitelman	del(13)(q11q14)		Mitelman (CGAP)		Chronic lymphocytic leukemia
		Mitelman	del(13)(q11q21)		Mitelman (CGAP)		Diffuse large B-cell lymphoma
		Mitelman	del(13)(q11q21)		Mitelman (CGAP)		Multiple myeloma
		Mitelman	der(12)t(12;13)(p11;q11)		Mitelman (CGAP)		Acute erythroleukemia (FAB type M6)
		Mitelman	der(12)t(12;13)(p11;q11)		Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
		Mitelman	der(17)t(13;17)(q11;p11)		Mitelman (CGAP)		Chronic lymphocytic leukemia
		Mitelman	der(3)t(3;13)(q29;q11)		Mitelman (CGAP)		Mantle cell lymphoma
13q11		Cosmic_SV	dup(13)(q11)		Cosmic_SV [COST219181]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11		Cosmic_SV	dup(13)(q11)		Cosmic_SV [COST220131]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11		Cosmic_SV	dup(13)(q11)		Cosmic_SV [COST220132]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11		Cosmic_SV	dup(13)(q11)		Cosmic_SV [COST222294]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11		Cosmic_SV	dup(13)(q11)		Cosmic_SV [COST388389]	pancreas__NS	carcinoma__NS		[COSU382]
13q11		Cosmic_SV	dup(13)(q11)		Cosmic_SV [COST444765]	pancreas__NS	carcinoma__NS		[COSU382]
13q11	13q11	Cosmic_SV	dup(13)(q11q11)		Cosmic_SV [COST118417]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q12	Cosmic_SV	dup(13)(q11q12)		Cosmic_SV [COST127735]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q12	Cosmic_SV	dup(13)(q11q12)		Cosmic_SV [COST128512]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q21	Cosmic_SV	dup(13)(q11q21)		Cosmic_SV [COST122366]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q11	Cosmic_SV	inv(13)(q11q11)		Cosmic_SV [COST119254]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU586]
13q11	13q11	Cosmic_SV	inv(13)(q11q11)		Cosmic_SV [COST119254]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q11	Cosmic_SV	inv(13)(q11q11)		Cosmic_SV [COST120751]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q11	Cosmic_SV	inv(13)(q11q11)		Cosmic_SV [COST120924]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q11	Cosmic_SV	inv(13)(q11q11)		Cosmic_SV [COST130643]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	13q11	Cosmic_SV	inv(13)(q11q11)		Cosmic_SV [COST139621]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
13q11	13q12	Cosmic_SV	inv(13)(q11q12)		Cosmic_SV [COST215249]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q12	Cosmic_SV	inv(13)(q11q12)		Cosmic_SV [COST220133]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q12	Cosmic_SV	inv(13)(q11q12)		Cosmic_SV [COST220134]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q12	Cosmic_SV	inv(13)(q11q12)		Cosmic_SV [COST221730]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q12	Cosmic_SV	inv(13)(q11q12)		Cosmic_SV [COST223340]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q33	Cosmic_SV	inv(13)(q11q33)		Cosmic_SV [COST225537]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13q33	Cosmic_SV	inv(13)(q11q33)		Cosmic_SV [COST225538]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
		Mitelman	t(12;13)(p11;q11)		Mitelman (CGAP)		Acute erythroleukemia (FAB type M6)
		Mitelman	t(12;13)(p11;q11)		Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
		Mitelman	t(13;17)(q11;p11)		Mitelman (CGAP)		Chronic lymphocytic leukemia
13q11	20q12	dbCRID	t(13;20)(q11;q12)		10705		B-Cell Acute Lymphoblastic Leukemia	[PubMed]
		Mitelman	t(13;22)(q11;p11)		Mitelman (CGAP)	Breast	Adenocarcinoma
		Mitelman	t(3;13)(q29;q11)		Mitelman (CGAP)		Mantle cell lymphoma
8p11	13q11	dbCRID	t(8;13)(p11;q11)		11546		Atypical Myeloproliferative Disorder	[PubMed]
		Mitelman	t(8;13)(p11;q11)		Mitelman (CGAP)		Chronic myeloproliferative disorder, NOS
		Mitelman	t(8;13)(p12;q11)		Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
10q21	13q11	Cosmic_SV	u(10;13)(q21;q11)		Cosmic_SV [COST520167]	lung__NS	carcinoma__adenocarcinoma
11p12	13q11	Cosmic_SV	u(11;13)(p12;q11)		Cosmic_SV [COST338063]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
11p13	13q11	Cosmic_SV	u(11;13)(p13;q11)		Cosmic_SV [COST353652]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
11p13	13q11	Cosmic_SV	u(11;13)(p13;q11)		Cosmic_SV [COST402630]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
1p12	13q11	Cosmic_SV	u(1;13)(p12;q11)		Cosmic_SV [COST342286]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
1p13	13q11	Cosmic_SV	u(1;13)(p13;q11)		Cosmic_SV [COST384359]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
12q12	13q11	Cosmic_SV	u(12;13)(q12;q11)		Cosmic_SV [COST314730]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
12q15	13q11	Cosmic_SV	u(12;13)(q15;q11)		Cosmic_SV [COST175240]	central_nervous_system__brain	glioma__astrocytoma_Grade_IV
13q11	14q11	Cosmic_SV	u(13;14)(q11;q11)		Cosmic_SV [COST131244]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	15q11	Cosmic_SV	u(13;15)(q11;q11)		Cosmic_SV [COST328869]	breast__NS	carcinoma__ER-HER-positive_carcinoma		[COSU652]
13q11	15q14	Cosmic_SV	u(13;15)(q11;q14)		Cosmic_SV [COST343180]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	15q21	Cosmic_SV	u(13;15)(q11;q21)		Cosmic_SV [COST366042]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU652]
13q11	16p13	Cosmic_SV	u(13;16)(q11;p13)		Cosmic_SV [COST382004]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	17p12	Cosmic_SV	u(13;17)(q11;p12)		Cosmic_SV [COST353621]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	17q11	Cosmic_SV	u(13;17)(q11;q11)		Cosmic_SV [COST381780]	breast__NS	carcinoma__NS		[COSU652]
13q11	18p11	Cosmic_SV	u(13;18)(q11;p11)		Cosmic_SV [COST192992]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	18p11	Cosmic_SV	u(13;18)(q11;p11)		Cosmic_SV [COST569492]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	18p11	Cosmic_SV	u(13;18)(q11;p11)		Cosmic_SV [COST578487]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	18p11	Cosmic_SV	u(13;18)(q11;p11)		Cosmic_SV [COST720398]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	19q13	Cosmic_SV	u(13;19)(q11;q13)		Cosmic_SV [COST349022]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	20p13	Cosmic_SV	u(13;20)(q11;p13)		Cosmic_SV [COST403915]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	21p11	Cosmic_SV	u(13;21)(q11;p11)		Cosmic_SV [COST213663]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	21p11	Cosmic_SV	u(13;21)(q11;p11)		Cosmic_SV [COST366158]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	21p11	Cosmic_SV	u(13;21)(q11;p11)		Cosmic_SV [COST506040]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	21p11	Cosmic_SV	u(13;21)(q11;p11)		Cosmic_SV [COST562977]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	4p11	Cosmic_SV	u(13;4)(q11;p11)		Cosmic_SV [COST117571]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
13q11	4p15	Cosmic_SV	u(13;4)(q11;p15)		Cosmic_SV [COST728786]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	4p16	Cosmic_SV	u(13;4)(q11;p16)		Cosmic_SV [COST563559]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	6p22	Cosmic_SV	u(13;6)(q11;p22)		Cosmic_SV [COST564884]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	6p25	Cosmic_SV	u(13;6)(q11;p25)		Cosmic_SV [COST754828]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	9p21	Cosmic_SV	u(13;9)(q11;p21)		Cosmic_SV [COST346139]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST237677]	bone__NS	osteosarcoma__NS
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST344555]	NS__NS	NS__NS		[COSU652]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST405475]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST465361]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST493114]	prostate__NS	carcinoma__adenocarcinoma		[COSU675]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST499180]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST562409]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST564212]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST576953]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST731056]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST731251]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST741077]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST743234]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST744661]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13p13	Cosmic_SV	u(13)(q11;p13)		Cosmic_SV [COST758715]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST315815]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST348584]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST350982]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST352240]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST373822]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST375822]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST501133]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST721851]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST724916]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST735239]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST741549]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST762192]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q11	Cosmic_SV	u(13)(q11;q11)		Cosmic_SV [COST763339]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST322022]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST323138]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST332150]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST333269]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST333345]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST334341]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST355495]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST369588]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST383263]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST385797]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST403509]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST444955]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST503679]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST505167]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST507068]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST554285]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST562319]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST562617]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST568109]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST574032]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST727437]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST727908]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST763288]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST763435]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST770441]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q12	Cosmic_SV	u(13)(q11;q12)		Cosmic_SV [COST772632]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q13	Cosmic_SV	u(13)(q11;q13)		Cosmic_SV [COST385274]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q13	Cosmic_SV	u(13)(q11;q13)		Cosmic_SV [COST386995]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q13	Cosmic_SV	u(13)(q11;q13)		Cosmic_SV [COST722729]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
13q11	13q13	Cosmic_SV	u(13)(q11;q13)		Cosmic_SV [COST753257]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q11	13q14	Cosmic_SV	u(13)(q11;q14)		Cosmic_SV [COST495063]	endometrium__NS	carcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour		[COSU677]
13q11	13q21	Cosmic_SV	u(13)(q11;q21)		Cosmic_SV [COST316813]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q31	Cosmic_SV	u(13)(q11;q31)		Cosmic_SV [COST361509]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	13q32	Cosmic_SV	u(13)(q11;q32)		Cosmic_SV [COST506337]	prostate__NS	carcinoma__adenocarcinoma		[COSU675]
13q11	13q33	Cosmic_SV	u(13)(q11;q33)		Cosmic_SV [COST755003]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
13q14	13q11	Cosmic_SV	u(13)(q14;q11)		Cosmic_SV [COST750144]	pancreas__NS	carcinoma__NS		[COSU382]
13q11	Xp11	Cosmic_SV	u(13;X)(q11;p11)		Cosmic_SV [COST391411]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
13q11	Xp21	Cosmic_SV	u(13;X)(q11;p21)		Cosmic_SV [COST382062]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
18p11	13q11	Cosmic_SV	u(18;13)(p11;q11)		Cosmic_SV [COST555687]	skin__NS	carcinoma__NS		[COSU656]
18p11	13q11	Cosmic_SV	u(18;13)(p11;q11)		Cosmic_SV [COST570423]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
18p11	13q11	Cosmic_SV	u(18;13)(p11;q11)		Cosmic_SV [COST572276]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
18p11	13q11	Cosmic_SV	u(18;13)(p11;q11)		Cosmic_SV [COST737739]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
21p11	13q11	Cosmic_SV	u(21;13)(p11;q11)		Cosmic_SV [COST148157]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
21p11	13q11	Cosmic_SV	u(21;13)(p11;q11)		Cosmic_SV [COST154809]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
21p11	13q11	Cosmic_SV	u(21;13)(p11;q11)		Cosmic_SV [COST580075]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
21p11	13q11	Cosmic_SV	u(21;13)(p11;q11)		Cosmic_SV [COST759479]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
4p15	13q11	Cosmic_SV	u(4;13)(p15;q11)		Cosmic_SV [COST750767]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
6p22	13q11	Cosmic_SV	u(6;13)(p22;q11)		Cosmic_SV [COST353501]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
6p22	13q11	Cosmic_SV	u(6;13)(p22;q11)		Cosmic_SV [COST369499]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
6p22	13q11	Cosmic_SV	u(6;13)(p22;q11)		Cosmic_SV [COST565827]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
6p24	13q11	Cosmic_SV	u(6;13)(p24;q11)		Cosmic_SV [COST405147]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
7p11	13q11	Cosmic_SV	u(7;13)(p11;q11)		Cosmic_SV [COST348399]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
9p21	13q11	Cosmic_SV	u(9;13)(p21;q11)		Cosmic_SV [COST213563]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
9q22	13q11	Cosmic_SV	u(9;13)(q22;q11)		Cosmic_SV [COST130659]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]

Genes in band 13q11

(click on headers to reorder columns)

GoldenPath hg38	Band 1	Band 2	Class	Fusion	Partner 1	Partner 2	Links	Omim	Accession
chr13:18195297-18232016 +	13q11	20q13	Gene [CT]	FAM230C/ADNP	FAM230C	ADNP	[ChiTaRS]	[Omim]	[GenBank]
chr13:18195297-18232016 +	13q11	1p13	Gene [CT]	IGSF3/FAM230C	FAM230C	IGSF3	[ChiTaRS]	[Omim]	[GenBank]
chr13:18195297-18232016 +	13q11		Gene [G]		FAM230C			[Omim]	[Entrez]
chr13:18738100-18740099 -	13q11		Gene [G]		LINC00417			[Omim]	[Entrez]
chr13:18811143-18871967 -	13q11		Gene [G]		ANKRD20A9P			[Omim]	[Entrez]

[ Bold normal : A; Italic normal :G; Italic small : E ]

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 [previous] 13 13p 13q 13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34 [next]

External links

Mitelman Database [NCI] : Breakpoint 13q11

[ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]
Gene Expression (MSigDB) in 13q11 [ HTC ] [ NCI ] [ INV ]

Global tables

Anomalies list (tabulated txt file)

Genes list (tabulated txt file)

Anomalies list - limited to abnormalities with gene fusions(tabulated txt file)

Genes list - limited to genes fusions (tabulated txt file)

list of gene fusions for each gene (with origins of the data)

list of gene fusions by origin (with topography and morphology)

The human genome used in these documents corresponds to the hg38 (Build GRCh38). A more precise informtion about assemby can be found at Human genome Overview.
The limits of cytogenetic bands correspond to data from UCSC : cytoBand.txt.gz

ISCN Abbreviated Terms and Symbols

[A]Atlas - Annotated genes

[G]Atlas - Other Genes

[F] fishClones (hg38)

[M] Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer [ Aug 2019]
and "Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer" (2012). Mitelman F, Johansson B and Mertens F (Eds.)" [Sept 2016]

[N] Mitelman Database of Chromosome Aberrations (/number)

[COS] Catalogue Of Somatic Mutations In Cancer [v90]

[COF] Catalogue Of Somatic Mutations In Cancer : Gene Fusions [v90] [PubMed 2017]

[CSV] Catalogue Of Somatic Mutations In Cancer : Structural variations (extracted frorm CosmicStructExport.tsv) [v90]) [PubMed 2014]

[CEN] Cancer Gene Census [v90]

[TF] [PubMed 2014]TCGA Fusions (MDAndersson) TCGA Fusions (Jackson Lab) [PubMed 2014] (the fusions are limited to tiers 1 and 2)

[TIC] [PubMed 2007] TicDB

[H2] [PubMed 2006] ChimerDB_2.0

[H3] [PubMed 2010] [PubMed 2017] ChimerDB_3.0 [PubMed 2017]

[K] [PubMed 2011] dbCRID

[CT] [PubMed 2011] [PubMed 2012] [PubMed 2014] ChiTARS-2.1 [PubMed 2016] ChiTARS-3.1

[LAI] [PubMed 2015] Fusion transcript loci share many genomic Features with non-fusion loci. Lai et al. BMC Genomics 2015

[PM] Gene Fusions from Pubmed abstract mining

[L] [PubMed 2011] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57.

[S] [PubMed 21009] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.

[V][PubMed 2012] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12.

[GT] [Pubmed 2015] Cell Lines (Genentech) Nature Biotech Suppl.Table8

[FC] [PubMed 2015] Fusion cancer (Beijing) (the fusions are limited to class A and B)

[NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)

[URK] [PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.

[AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.

[FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13

[MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3

[GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2

[MAY] [PubMed 2018] Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumor, Winters et al (July 2018) Table S7

[GDB] [PubMed 2019] Fusion gene annotation DataBase. Kim P t Zhou X. Nucleic Acids Res. 2019 Jan 8;47(D1):D994-D1004 [site FusionGDB]

[DDR][DDG] [PubMed 2019] Improved detection of gene fusions by applying statistical methods reveals oncogenic RNA cancer drivers, Dehghannasiri R et al, Proc Natl Acad Sci U S A. 2019 Jul 15. pii: 201900391. doi: 10.1073/pnas.1900391116

[DDR] TGCA novel recurrent fusions - Sup. Table 1

[DDG] GTEx (normal tissus) recurrent fusions - Sup. Table 1

Contributor(s)

Written may 2012 Philippe Dessen

Updated oct. 2019 Philippe Dessen and Jean-Loup Huret

Citation

This paper should be referenced as such :
Dessen P and Huret JL. Chromosomal band 13q11. Atlas Genet Cytogenet Oncol Haematol. July 2012.
URL : http://atlasgeneticsoncology.org/Bands/13q11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : lun. oct. 28 16:34:30 CET 2019

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Written	may 2012	Philippe Dessen

Updated	oct. 2019	Philippe Dessen and Jean-Loup Huret