References

The human genome used in these documents corresponds to the hg38 (Build GRCh38). A more precise informtion about assemby can be found at Human genome Overview.
The limits of cytogenetic bands correspond to data from UCSC : cytoBand.txt.gz
• ISCN Abbreviated Terms and Symbols [NCI]

• [A]Atlas - Annotated genes
• [G]Atlas - Genes implicated in cancer
• [E] Others genes (Entrez Gene - NCBI)
• [M] Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer [ CGAP Apr 2018]
  and "Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer" (2012). Mitelman F, Johansson B and Mertens F (Eds.)" [Sept 2016]
• [N] Mitelman Database of Chromosome Aberrations (/number)
• [COS] Catalogue Of Somatic Mutations In Cancer [v85]
• [COF] Catalogue Of Somatic Mutations In Cancer : Gene Fusions [v85] [PubMed 2017]
• [CSV] Catalogue Of Somatic Mutations In Cancer : Structural variations (extracted frorm CosmicStructExport.tsv) [v85])
• [CEN] Cancer Gene Census [v85]
• [TF] TCGA Fusions (MDAndersson)  TCGA Fusions (Jackson Lab)    [PubMed 2014] (the fusions are limited to tier 1 and 2)
• [TIC] TicDB [PubMed 2007]
• [H2] ChimerDB_2.0 [PubMed 2006]   [PubMed 2010]  [H3] ChimerDB_3.0 [PubMed 2017]
• [K] dbCRID [PubMed 2011]
• [CT] ChiTARS-2.1 [PubMed 2012] [PubMed 2014]
• [CT] ChiTARS-3.1 [PubMed 2016]
• [LAI] Fusion transcript loci share many genomic Features with non-fusion loci. Lai et al. BMC Genomics 2015  [PubMed 2015]
• [PM] Gene Fusions from Pubmed abstract mining
• [L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57.   [PubMed 2011]
• [S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.  [PubMed 21009]
• [V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12.   [PubMed 2012]
• [GT] Cell Lines (Genentech)  [Pubmed 2015]   Nature Biotech Suppl.Table8
• [FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)
• [NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)
• [URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.
• [AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.
• [FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13
• [MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3
• [GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2

Contributor(s)

Written	may 2012	Philippe Dessen
Updated	mai 2018	Philippe Dessen and Jean-Loup Huret

Citation

This paper should be referenced as such :

Dessen P and Huret JL. Chromosomal band 4. Atlas Genet Cytogenet Oncol Haematol. July 2012. URL : http://atlasgeneticsoncology.org/Bands/4.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : lun. mai 14 12:55:23 CEST 2018