Chromosomal abnormalities in band 4q

References

The human genome used in these documents corresponds to the hg38 (Build GRCh38). A more precise informtion about assemby can be found at Human genome Overview.
The limits of cytogenetic bands correspond to data from UCSC : cytoBand.txt.gz
• ISCN Abbreviated Terms and Symbols [NCI]

• [A]Atlas - Annotated genes
• [G]Atlas - Genes implicated in cancer
• [E] Others genes (Entrez Gene - NCBI)
• [M] Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer [ CGAP Jun 2018]
  and "Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer" (2012). Mitelman F, Johansson B and Mertens F (Eds.)" [Sept 2016]
• [N] Mitelman Database of Chromosome Aberrations (/number)
• [COS] Catalogue Of Somatic Mutations In Cancer [v86]
• [COF] Catalogue Of Somatic Mutations In Cancer : Gene Fusions [v86] [PubMed 2017]
• [CSV] Catalogue Of Somatic Mutations In Cancer : Structural variations (extracted frorm CosmicStructExport.tsv) [v86])
• [CEN] Cancer Gene Census [v86]
• [TF] TCGA Fusions (MDAndersson)  TCGA Fusions (Jackson Lab)    [PubMed 2014] (the fusions are limited to tier 1 and 2)
• [TIC] TicDB [PubMed 2007]
• [H2] ChimerDB_2.0 [PubMed 2006]   [PubMed 2010]  [H3] ChimerDB_3.0 [PubMed 2017]
• [K] dbCRID [PubMed 2011]
• [CT] ChiTARS-2.1 [PubMed 2012] [PubMed 2014]
• [CT] ChiTARS-3.1 [PubMed 2016]
• [LAI] Fusion transcript loci share many genomic Features with non-fusion loci. Lai et al. BMC Genomics 2015  [PubMed 2015]
• [PM] Gene Fusions from Pubmed abstract mining
• [L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57.   [PubMed 2011]
• [S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.  [PubMed 21009]
• [V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12.   [PubMed 2012]
• [GT] Cell Lines (Genentech)  [Pubmed 2015]   Nature Biotech Suppl.Table8
• [FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)
• [NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)
• [URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.
• [AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.
• [FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13
• [MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3
• [GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2
• [MAY] [PubMed 2018] Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumor, Winters et al (July 2018) Table S7

Contributor(s)

Written	may 2012	Philippe Dessen
Updated	août 2018	Philippe Dessen and Jean-Loup Huret

Citation

This paper should be referenced as such :

Dessen P and Huret JL. Chromosomal band 4q. Atlas Genet Cytogenet Oncol Haematol. July 2012. URL : http://atlasgeneticsoncology.org/Bands/4q.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : jeu. août 16 09:59:03 CEST 2018