Chromosome 5

Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ENTITIES: by Chromosome band

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Chromosome 5

[previous] 5 5p 5q 5p15 5p14 5p13 5p12 5p11 5q11 5q12 5q13 5q14 5q15 5q21 5q22 5q23 5q31 5q32 5q33 5q34 5q35 [next]

Band 5p11

chr5:46100000-48800000 (2700 Kb)

Chromosomal abnormalities in band 5p11

Genes in band 5p11 (reference hg38)

External links

References

Chromosomal abnormalities in band 5p11

(click on headers to reorder columns)

Band 1	Band 2	Class	Entity	Links	Topography	Morphology	[PubMed]	[Study]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST115612]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST117638]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST121632]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST123945]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST127220]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST129774]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST133687]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST136205]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST137970]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST139592]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST161414]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11		Cosmic_SV	del(5)(p11)	Cosmic_SV [COST27843]	large_intestine__NS	carcinoma__adenocarcinoma	[PubMed]
5p11		Mitelman	del(5)(p11)	Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
5p11		Mitelman	del(5)(p11)	Mitelman (CGAP)	Breast	Adenocarcinoma
5p11		Mitelman	del(5)(p11)	Mitelman (CGAP)	Kidney	Adenocarcinoma
5p11		Mitelman	del(5)(p11)	Mitelman (CGAP)		Mature B-cell neoplasm, NOS
5p11		Mitelman	del(5)(p11)	Mitelman (CGAP)	Oral cavity	Squamous cell carcinoma
5p11		Mitelman	del(5)(p11)	Mitelman (CGAP)	Soft tissue	Leiomyosarcoma
5p11	5q32	Cosmic_SV	del(5)(p11q32)	Cosmic_SV [COST197307]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
5p13	5p11	Cosmic_SV	del(5)(p13p11)	Cosmic_SV [COST185071]	skin__NS	carcinoma__NS		[COSU656]
5p11	15p11	Mitelman	der(15)t(5;15)(p11;p11)	Mitelman (CGAP)		Mantle cell lymphoma
5p11	17p11	Mitelman	der(17)t(5;17)(p11;p11)	Mitelman (CGAP)		Acute myeloblastic leukemia with maturation (FAB type M2)
5p11	17p11	Mitelman	der(17)t(5;17)(p11;p11)	Mitelman (CGAP)		Acute myeloid leukemia, NOS
5p11	17p11	Mitelman	der(17)t(5;17)(p11;p11)	Mitelman (CGAP)		Refractory anemia with excess of blasts (FAB)
5p11	13q14	Mitelman	der(5)t(5;13)(p11;q14)	Mitelman (CGAP)	Skeleton	Osteosarcoma, NOS
5p11		Cosmic_SV	dup(5)(p11)	Cosmic_SV [COST196842]	prostate__NS	carcinoma__adenocarcinoma		[COSU537]
5p11	5p11	Cosmic_SV	dup(5)(p11p11)	Cosmic_SV [COST119157]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11	5p11	Cosmic_SV	dup(5)(p11p11)	Cosmic_SV [COST159576]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11	5p11	Cosmic_SV	dup(5)(p11p11)	Cosmic_SV [COST193851]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5p11	5p11	Cosmic_SV	inv(5)(p11p11)	Cosmic_SV [COST148211]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p12	5p12	Cosmic_SV	inv(5)(p12p12)	Cosmic_SV [COST156435]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
1p21	5p11	dbCRID	t(1;5)(p21;p11)	11072		Myeloid Hematological Malignancies	[PubMed]
5p11	13q14	Mitelman	t(5;13)(p11;q14)	Mitelman (CGAP)	Skeleton	Osteosarcoma, NOS
5p11	15p11	Mitelman	t(5;15)(p11;p11)	Mitelman (CGAP)		Mantle cell lymphoma
5p11	17p11	Mitelman	t(5;17)(p11;p11)	Mitelman (CGAP)		Acute myeloblastic leukemia with maturation (FAB type M2)
5p11	17p11	Mitelman	t(5;17)(p11;p11)	Mitelman (CGAP)		Acute myeloid leukemia, NOS
5p11	17p11	Mitelman	t(5;17)(p11;p11)	Mitelman (CGAP)		Refractory anemia with excess of blasts (FAB)
5p11	17q11	Atlas - Leukemia	t(5;17)(p11;q11)	t0517p11q11ID1772		AML	[Biblio]
1p31	5p11	Cosmic_SV	u(1;5)(p31;p11)	Cosmic_SV [COST124777]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
1q41	5p11	Cosmic_SV	u(1;5)(q41;p11)	Cosmic_SV [COST451101]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
18p11	5p11	Cosmic_SV	u(18;5)(p11;p11)	Cosmic_SV [COST137931]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
20p11	5p11	Cosmic_SV	u(20;5)(p11;p11)	Cosmic_SV [COST167422]	central_nervous_system__brain	primitive_neuroectodermal_tumour-medulloblastoma__large_cell		[COSU379]
5p11	10q22	Cosmic_SV	u(5;10)(p11;q22)	Cosmic_SV [COST445844]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p11	11q24	Cosmic_SV	u(5;11)(p11;q24)	Cosmic_SV [COST162632]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11	17p13	Cosmic_SV	u(5;17)(p11;p13)	Cosmic_SV [COST327863]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
5p11	3q21	Cosmic_SV	u(5;3)(p11;q21)	Cosmic_SV [COST185820]	skin__NS	carcinoma__NS		[COSU656]
5p11	6p25	Cosmic_SV	u(5;6)(p11;p25)	Cosmic_SV [COST136780]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11	6p25	Cosmic_SV	u(5;6)(p11;p25)	Cosmic_SV [COST449315]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p11	6q11	Cosmic_SV	u(5;6)(p11;q11)	Cosmic_SV [COST441842]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p11	6q24	Cosmic_SV	u(5;6)(p11;q24)	Cosmic_SV [COST447353]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p11	9p21	Cosmic_SV	u(5;9)(p11;p21)	Cosmic_SV [COST137585]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
5p11	9p24	Cosmic_SV	u(5;9)(p11;p24)	Cosmic_SV [COST465607]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p11	5p11	Cosmic_SV	u(5)(p11;p11)	Cosmic_SV [COST113520]	haematopoietic_and_lymphoid_tissue__NS	lymphoid_neoplasm__NS		[COSU440]
5p11	5p11	Cosmic_SV	u(5)(p11;p11)	Cosmic_SV [COST114096]	haematopoietic_and_lymphoid_tissue__NS	lymphoid_neoplasm__NS		[COSU440]
5p11	5p11	Cosmic_SV	u(5)(p11;p11)	Cosmic_SV [COST114201]	haematopoietic_and_lymphoid_tissue__NS	lymphoid_neoplasm__NS		[COSU440]
5p11	5p11	Cosmic_SV	u(5)(p11;p11)	Cosmic_SV [COST194589]	bone__NS	Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour__NS		[COSU645]
5p11	5p11	Cosmic_SV	u(5)(p11;p11)	Cosmic_SV [COST453466]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p11	5p11	Cosmic_SV	u(5)(p11;p11)	Cosmic_SV [COST461337]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p12	5p11	Cosmic_SV	u(5)(p12;p11)	Cosmic_SV [COST461774]	breast__NS	carcinoma__HER-positive_carcinoma		[COSU668]
5p15	5p11	Cosmic_SV	u(5)(p15;p11)	Cosmic_SV [COST327845]	breast__NS	carcinoma__ductal_carcinoma		[COSU652]
6p25	5p11	Cosmic_SV	u(6;5)(p25;p11)	Cosmic_SV [COST153477]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
7p21	5p11	Cosmic_SV	u(7;5)(p21;p11)	Cosmic_SV [COST185559]	skin__NS	carcinoma__NS		[COSU656]

Genes in band 5p11

(click on headers to reorder columns)

GoldenPath hg38	Band 1	Band 2	Class	Clone	Fusion	Partner 1	Partner 2	Links	Topography	Morphology	Pubmed	Omim	Accession

[ Bold normal : A; Italic normal :G; Italic small : E ]

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 [previous] 5 5p 5q 5p15 5p14 5p13 5p12 5p11 5q11 5q12 5q13 5q14 5q15 5q21 5q22 5q23 5q31 5q32 5q33 5q34 5q35 [next]

External links

Mitelman Database [NCI] : Breakpoint 5p11

[ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]

Gene Expression (MSigDB) in 5p11 [ HTC ] [ NCI ] [ INV ]

The human genome used in these documents corresponds to the hg38 (Build GRCh38). A more precise informtion about assemby can be found at Human genome Overview.
The limits of cytogenetic bands correspond to data from UCSC : cytoBand.txt.gz

ISCN Abbreviated Terms and Symbols [NCI]

[A]Atlas - Annotated genes

[G]Atlas - Genes implicated in cancer

[E] Others genes (Entrez Gene - NCBI

[M] Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer [ CGAP May 2017] and "Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer" (2012). Mitelman F, Johansson B and Mertens F (Eds.)" [Sept 2016]

[N] Mitelman Database of Chromosome Aberrations (/number)

[COS] Catalogue Of Somatic Mutations In Cancer [v81]

[COF] Catalogue Of Somatic Mutations In Cancer : Gene Fusions [v81] [PubMed 2017]

[CSV] Catalogue Of Somatic Mutations In Cancer : Structural variations (extracted frorm CosmicStructExport.tsv) [v81])

[CEN] Cancer Gene Census [v81]

[TF] TCGA Fusions [PubMed 2014] (the fusions are limited to tier 1 and 2)

[TIC] TicDB [PubMed 2007]

[H2] ChimerDB_2.0 [PubMed 2006] [PubMed 2010] [H3] ChimerDB_3.0 [PubMed 2017]

[K] dbCRID [PubMed 2011]

[CT] ChiTARS-2.1 [PubMed 2012] [PubMed 2014]

[CT] ChiTARS-3.1 [PubMed 2016]

[LAI] Fusion transcript loci share many genomic Features with non-fusion loci. Lai et al. BMC Genomics 2015 [PubMed 2015]

[PM] Gene Fusions from Pubmed abstract mining

[L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57. [PubMed]

[S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5. [PubMed]

[V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12. [PubMed]

[GT] Cell Lines (Genentech) [Pubmed 2015] Nature Biotech Suppl.Table8

[FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)

[NOR][PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)

[URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.

[AM][PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.

Contributor(s)

Written may 2012 Philippe Dessen

Updated juin 2017 Philippe Dessen and Jean-Loup Huret

Citation

This paper should be referenced as such :
Dessen P and Huret JL. Chromosomal band 5p11. Atlas Genet Cytogenet Oncol Haematol. July 2012.
URL : http://atlasgeneticsoncology.org/Bands/5p11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : mer. juin 7 12:23:50 CEST 2017

Home Genes Leukemias Solid Tumors Cancer-Prone Deep Insight Case reports Journals Portal Teaching

Written	may 2012	Philippe Dessen

Updated	juin 2017	Philippe Dessen and Jean-Loup Huret