Chromosome 9

Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ENTITIES: by Chromosome band

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22

Chromosome 9


[previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

Band 9p11

chr9:40000000-43000000 (3000 Kb)

  • Chromosomal abnormalities in band 9p11
  • Genes in band 9p11 (reference hg38)
  • External links
  • References

    Chromosomal abnormalities in band 9p11

    (click on headers to reorder columns)
    Band 1Band 2ClassEntityPartner 1Partner 2LinksTopographyMorphology[PubMed][Study]
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC) Acute myeloblastic leukemia without maturation (FAB type M1)  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC) Acute myelomonocytic leukemia (FAB type M4)  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC)BrainAstrocytoma, grade III-IV/Glioblastoma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC) Diffuse large B-cell lymphoma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC)KidneyAdenocarcinoma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC)LungAdenocarcinoma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC) Multiple myeloma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC)SkinMalignant melanoma  
      Mitelmandel(9)(p11)  Mitelman (ISB-CGC)Soft tissueMalignant peripheral nerve sheath tumor/Triton  
      Mitelmandel(9)(p11p13)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandel(9)(p11p21)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandel(9)(p11p22)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p119q12Cosmic_SVdel(9)(p11q12)  Cosmic_SV [COST518767]lung__NScarcinoma__adenocarcinoma  
      Mitelmander(12)t(9;12)(p11;p12)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmander(9)del(9)(p11)del(9)(q12)  Mitelman (ISB-CGC)Uterus, corpusEndometrial stromal sarcoma  
      Mitelmander(9)del(9)(p11)del(9)(q22)  Mitelman (ISB-CGC)SkinMalignant melanoma  
      Mitelmander(9)t(1;9)(q11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmander(9)t(7;9)(q11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmander(9)t(9;12)(p11;q21)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(7;9)(p11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(7;9)(p13;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;12)(p11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;12)(p11;p12)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;15)(p11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;17)(p11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;20)(p11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;20)(p11;q11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmandic(9;22)(p11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p11 Cosmic_SVdup(9)(p11)  Cosmic_SV [COST220243]pancreas__NScarcinoma__ductal_carcinoma [COSU382]
    9p119p13dbCRIDdup(9)(p11.2p13.1) 10261[PubMed] 
    9p119p13dbCRIDdup(9)(p11.2p13.1) 10262[PubMed] 
    9p119p13dbCRIDdup(9)(p11.2p13.1) 10263Reproductive Failure[PubMed] 
    9p11 Cosmic_SVdup(9)(p11)  Cosmic_SV [COST361656]pancreas__NScarcinoma__ductal_carcinoma [COSU382]
    9p11 Cosmic_SVdup(9)(p11)  Cosmic_SV [COST406726]pancreas__NScarcinoma__ductal_carcinoma [COSU382]
    9p119p11Cosmic_SVdup(9)(p11p11)  Cosmic_SV [COST146954]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p119q12Cosmic_SVdup(9)(p11q12)  Cosmic_SV [COST114847]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p119q12Cosmic_SVdup(9)(p11q12)  Cosmic_SV [COST114847]pancreas__NScarcinoid-endocrine_tumour__NS [COSU586]
    9p119q12Cosmic_SVdup(9)(p11q12)  Cosmic_SV [COST114847]pancreas__NScarcinoma__ductal_carcinoma [COSU328]
      Mitelmanidic(9)(p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmaninv(9)(p11q12)  Mitelman (ISB-CGC) Chronic myeloid leukemia, t(9;22)  
    9p119q13dbCRIDinv(9)(p11q13) 10012Psoriasis[PubMed] 
    9p119q13dbCRIDinv(9)(p11q13) 10653Isolated Growth Hormone Deficiency[PubMed] 
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Acute myeloblastic leukemia with maturation (FAB type M2)  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Acute myeloid leukemia, NOS  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Acute myelomonocytic leukemia (FAB type M4)  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Chronic lymphocytic leukemia  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Chronic myelomonocytic leukemia  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC)LungSquamous cell carcinoma  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Mature B-cell neoplasm, NOS  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Multiple myeloma  
      Mitelmaninv(9)(p11q13)  Mitelman (ISB-CGC) Nonneoplastic hematologic disorder/lesion  
    9p139p13Cosmic_SVinv(9)(p13p13)  Cosmic_SV [COST187252]pancreas__NScarcinoid-endocrine_tumour__NS [COSU650]
    9p139p13Cosmic_SVinv(9)(p13p13)  Cosmic_SV [COST187252]pancreas__NScarcinoid-endocrine_tumour__NS [COSU661]
    1p119p11dbCRIDt(1;9)(p11;p11) 10433Multiple Myeloma[PubMed] 
      Mitelmant(1;9)(q11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmant(7;9)(q11;p11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1110p12Atlas - Leukemiat(9;10)(p11;p12) MLLT10/CNTNAP3BMLLT10CNTNAP3BTL_t0910p11p12ID2964MPD[Biblio] 
      Mitelmant(9;12)(p11;p12)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmant(9;12)(p11;p13)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmant(9;12)(p11;q21)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
      Mitelmant(9;15)(p11;q11)  Mitelman (ISB-CGC)KidneyAdenocarcinoma  
      Mitelmant(9;9)(p11;p13)CNTNAP3BSHBMitelman (ISB-CGC)PancreasAdenocarcinoma[PubMed] 
      Mitelmant(9;9)(p11;q11)  Mitelman (ISB-CGC) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    11q229p11Cosmic_SVu(11;9)(q22;p11)  Cosmic_SV [COST734099]prostate__NScarcinoma__adenocarcinoma [COSU537]
    21p119p11Cosmic_SVu(21;9)(p11;p11)  Cosmic_SV [COST553430]prostate__NScarcinoma__adenocarcinoma [COSU537]
    4p169p11Cosmic_SVu(4;9)(p16;p11)  Cosmic_SV [COST569615]prostate__NScarcinoma__adenocarcinoma [COSU537]
    6p119p11Cosmic_SVu(6;9)(p11;p11)  Cosmic_SV [COST520543]lung__NScarcinoma__adenocarcinoma  
    9p1110p11Cosmic_SVu(9;10)(p11;p11)  Cosmic_SV [COST365661]NS__NSNS__NS [COSU652]
    9p1110p15Cosmic_SVu(9;10)(p11;p15)  Cosmic_SV [COST222435]pancreas__NScarcinoma__ductal_carcinoma [COSU382]
    9p1111q22Cosmic_SVu(9;11)(p11;q22)  Cosmic_SV [COST740916]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p1117p13Cosmic_SVu(9;17)(p11;p13)  Cosmic_SV [COST327304]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p1121p11Cosmic_SVu(9;21)(p11;p11)  Cosmic_SV [COST557335]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p1121p13Cosmic_SVu(9;21)(p11;p13)  Cosmic_SV [COST722228]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p114p16Cosmic_SVu(9;4)(p11;p16)  Cosmic_SV [COST577700]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p114p16Cosmic_SVu(9;4)(p11;p16)  Cosmic_SV [COST768080]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p119p11Cosmic_SVu(9)(p11;p11)  Cosmic_SV [COST343637]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p119p24Cosmic_SVu(9)(p11;p24)  Cosmic_SV [COST564196]endometrium__NScarcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour [COSU677]
    9p119q12Cosmic_SVu(9)(p11;q12)  Cosmic_SV [COST28670]haematopoietic_and_lymphoid_tissue__NSlymphoid_neoplasm__acute_lymphoblastic_T_cell_leukaemia  
    9p119q33Cosmic_SVu(9)(p11;q33)  Cosmic_SV [COST457843]breast__NScarcinoma__HER-positive_carcinoma [COSU668]
    9p219p11Cosmic_SVu(9)(p21;p11)  Cosmic_SV [COST176116]central_nervous_system__brainglioma__astrocytoma_Grade_IV  
    9p249p11Cosmic_SVu(9)(p24;p11)  Cosmic_SV [COST336712]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9q129p11Cosmic_SVu(9)(q12;p11)  Cosmic_SV [COST559326]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9q129p11Cosmic_SVu(9)(q12;p11)  Cosmic_SV [COST565917]prostate__NScarcinoma__adenocarcinoma [COSU537]

    Genes in band 9p11

    (click on headers to reorder columns)
    GoldenPath hg38Band 1Band 2ClassCloneFusionPartner 1Partner 2LinksTopographyMorphologyPubmedOmimAccession
    chr9:40323571-40329220 + 9p11   Gene [G]     FAM95B1       [Omim] [Entrez]
    chr9:40323571-40329220 + 9p11   Gene [G]     LOC105379252       [Omim] [Entrez]
    chr9:40348499-40353658 + 9p11   Gene [G]     GXYLT1P3       [Omim] [Entrez]
    chr9:40463758-40498781 - 9p11   Gene [G]     AQP7P3       [Omim] [Entrez]
    chr9:40499731-40566583 + 9p11   Gene [G]     LOC101929583       [Omim] [Entrez]
    chr9:40499981-40578494 + 9p11   Gene [G]     LOC102724580       [Omim] [Entrez]
    chr9:40929010-40929092 - 9p11   Gene [G]     MIR1299       [Omim] [Entrez]
    chr9:40992261-41039103 + 9p11   Gene [G]     FRG1HP       [Omim] [Entrez]
    chr9:41007015-41074625 - 9p11   Gene [G]     PGM5P2       [Omim] [Entrez]
    chr9:41100967-41108930 - 9p11   Gene [G]     LOC440896       [Omim] [Entrez]
    chr9:41126251-41128975 - 9p11   Gene [G]     FOXD4L6   [Cosmic]     [Omim] [Entrez]
    chr9:41131309-41189364 - 9p11 10p15 Gene [CT]   CBWD6/KLF6 CBWD6 KLF6 [Cosmic]
    [ChiTaRS]  
        [Omim] [GenBank]
    chr9:41131309-41189364 - 9p11   Gene [FM]   CR786580.1/CBWD6 CBWD6 CR786580.1 [Cosmic]   [PubMed] [Omim] [Entrez]
    chr9:41131309-41189364 - 9p11   Gene [G]     CBWD6   [Cosmic]     [Omim] [Entrez]
    chr9:41131309-41189364 - 9p11 10p15 Gene [GDB]   CBWD6/KLF6 CBWD6 KLF6 [Cosmic]
    [FusionGDB]  
        [Omim] [Entrez]
    chr9:41358862-41482101 + 9p11   Gene [G]     LOC107984035       [Omim] [Entrez]
    chr9:41694357-41699001 - 9p11   Gene [G]     FAM242F       [Omim] [Entrez]
    chr9:41891890-42129504 - 9p11   Gene [G]     CNTNAP3B   [Cosmic]     [Omim] [Entrez]
    chr9:41891890-42129504 - 9p11 9p13 Gene [GDB]   CNTNAP3B/SHB CNTNAP3B SHB [Cosmic]
    [FusionGDB]  
        [Omim] [Entrez]
    chr9:41891890-42129504 - 9p11 10p12 Gene [M]   MLLT10/CNTNAP3B CNTNAP3B MLLT10 [Cosmic]
    [Mitelman]
    Acute lymphoblastic leukemia/lymphoblastic lymphoma [PubMed] [Omim] [Entrez]
    chr9:41891890-42129504 - 9p11 9p13 Gene [M]   CNTNAP3B/SHB CNTNAP3B SHB [Cosmic]
    [Mitelman]
    Pancreas Adenocarcinoma [PubMed] [Omim] [Entrez]
    chr9:42183659-42189887 + 9p11   Gene [G]     SPATA31A6   [Cosmic]     [Omim] [Entrez]
    chr9:42198862-42206016 + 9p11   Gene [G]     FAM74A7       [Omim] [Entrez]
    chr9:42567859-42569349 - 9p11   Gene [G]     LOC103908605       [Omim] [Entrez]
    chr9:42579805-42586534 - 9p11   Gene [G]     LOC101927827       [Omim] [Entrez]
    chr9:42788400-42789608 + 9p11   Gene [G]     XLOC_007697       [Omim] [Entrez]

    [ Bold normal : A; Italic normal :G; Italic small : E ]

    X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
    [previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

    External links

    Mitelman Database [NCI] : Breakpoint 9p11

    [ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]
    Gene Expression (MSigDB) in 9p11  [ HTC ]  [ NCI ]  [ INV ]

    Global tables

  • Anomalies list (tabulated txt file)
  • Genes list (tabulated txt file)
  • Anomalies list - limited to abnormalities with gene fusions(tabulated txt file)
  • Genes list - limited to genes fusions (tabulated txt file)
  • list of gene fusions for each gene (with origins of the data)
  • list of gene fusions by origin (with topography and morphology)

    References

    Contributor(s)

    Writtenmay 2012Philippe Dessen
      
    Updatedfevr. 2020Philippe Dessen and Jean-Loup Huret

    Citation

    This paper should be referenced as such :
    Dessen P and Huret JL. Chromosomal band 9p11. Atlas Genet Cytogenet Oncol Haematol. July 2012.
    URL : http://atlasgeneticsoncology.org/Bands/9p11.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : ven. fevr. 21 17:27:49 CET 2020


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