Chromosome 9

Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ENTITIES: by Chromosome band

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22

Chromosome 9


[previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

Band 9p12

chr9:39000000-40000000 (1000 Kb)

  • Chromosomal abnormalities in band 9p12
  • Genes in band 9p12 (reference hg38)
  • External links
  • References

    Chromosomal abnormalities in band 9p12

    (click on headers to reorder columns)
    Band 1Band 2ClassEntityPartner 1Partner 2LinksTopographyMorphology[PubMed][Study]
    9p12 Cosmic_SVdel(9)(p12)  Cosmic_SV [COST142591]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p12 Cosmic_SVdel(9)(p12)  Cosmic_SV [COST142591]pancreas__NScarcinoid-endocrine_tumour__NS [COSU586]
    9p12 Cosmic_SVdel(9)(p12)  Cosmic_SV [COST151195]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p12 Cosmic_SVdel(9)(p12)  Cosmic_SV [COST160470]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p12 Cosmic_SVdel(9)(p12)  Cosmic_SV [COST195630]bone__NSEwings_sarcoma-peripheral_primitive_neuroectodermal_tumour__NS [COSU645]
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Bilineage or biphenotypic leukemia  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP)BrainAstrocytoma, grade III-IV/Glioblastoma  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Chronic lymphocytic leukemia  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Diffuse large B-cell lymphoma  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Follicular lymphoma  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Mantle cell lymphoma  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP) Mature B-cell neoplasm, NOS  
    9p12 Mitelmandel(9)(p12)  Mitelman (CGAP)PleuraMesothelioma  
    9p129p22Mitelmandel(9)(p12p22)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p129p24Mitelmandel(9)(p12p24)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p129q12Cosmic_SVdel(9)(p12q12)  Cosmic_SV [COST166089]pancreas__NScarcinoid-endocrine_tumour__NS [COSU586]
    9p249p12Cosmic_SVdel(9)(p24p12)  Cosmic_SV [COST118994]pancreas__NScarcinoma__ductal_carcinoma [COSU328]
    9p1220p11Mitelmander(9)del(9)(p12)t(9;20)(p12;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1212p12Mitelmandic(9;12)(p12;p12)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1220q11Mitelmandic(9;20)(p12;q11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p129p12Cosmic_SVdup(9)(p12p12)  Cosmic_SV [COST123586]pancreas__NScarcinoma__ductal_carcinoma [COSU328]
    9p129p12Cosmic_SVdup(9)(p12p12)  Cosmic_SV [COST153400]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p249p12Cosmic_SVdup(9)(p24p12)  Cosmic_SV [COST125724]pancreas__NScarcinoma__ductal_carcinoma [COSU328]
    9p12 Mitelmanidic(9)(p12)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p12 Cosmic_SVins(9)(p12)  Cosmic_SV [COST188666]prostate__NScarcinoma__adenocarcinoma [COSU538]
    9p129q13Mitelmaninv(9)(p12q13)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p129q13Mitelmaninv(9)(p12q13)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    9p129q13Mitelmaninv(9)(p12q13)  Mitelman (CGAP) Bilineage or biphenotypic leukemia  
    9p129q13Mitelmaninv(9)(p12q13)  Mitelman (CGAP)BreastAdenocarcinoma  
    9p129q13Mitelmaninv(9)(p12q13)  Mitelman (CGAP) Chronic lymphocytic leukemia  
    9p129q13Mitelmaninv(9)(p12q13)  Mitelman (CGAP) Myelodysplastic syndrome, NOS  
    9p219p21Cosmic_SVinv(9)(p21p21)  Cosmic_SV [COST116539]pancreas__NScarcinoma__ductal_carcinoma [COSU328]
    9p229p22Cosmic_SVinv(9)(p22p22)  Cosmic_SV [COST125716]pancreas__NScarcinoma__ductal_carcinoma [COSU328]
    1p139p12Atlas - Leukemiat(1;9)(p13;p12) PAX5/HIPK1PAX5HIPK1t0109p13p12ID1557B-ALL[Biblio] 
    7q119p12ChiTaRSt(7;9)(q11;p12)  ChiTaRS-[PubMed] 
    7q119p12Atlas - Leukemiat(7;9)(q11;p12) PAX5/POM121PAX5POM121t0709q11p12ID1558B-ALL[Biblio] 
    9p1213q21Atlas - Leukemiat(9;13)(p12;q21) PAX5/DACH1PAX5DACH1t0913p12q21ID1560B-ALL[Biblio] 
    9p1213q21ChiTaRSt(9;13)(p12;q21)  ChiTaRS-[PubMed] 
    9p1214q32Mitelmant(9;14)(p12;q32)  Mitelman (CGAP) Chronic lymphocytic leukemia  
    9p1220p11Mitelmant(9;20)(p12;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    4q289p12Cosmic_SVu(4;9)(q28;p12)  Cosmic_SV [COST380862]breast__NScarcinoma__ductal_carcinoma [COSU652]
    5q149p12Cosmic_SVu(5;9)(q14;p12)  Cosmic_SV [COST720889]prostate__NScarcinoma__adenocarcinoma [COSU538]
    5q149p12Cosmic_SVu(5;9)(q14;p12)  Cosmic_SV [COST773374]prostate__NScarcinoma__adenocarcinoma [COSU538]
    5q239p12Cosmic_SVu(5;9)(q23;p12)  Cosmic_SV [COST765170]prostate__NScarcinoma__adenocarcinoma [COSU538]
    6p119p12Cosmic_SVu(6;9)(p11;p12)  Cosmic_SV [COST326940]breast__NScarcinoma__ductal_carcinoma [COSU652]
    6p129p12Cosmic_SVu(6;9)(p12;p12)  Cosmic_SV [COST171423]adrenal_gland__adrenal_glandadrenal_cortical_carcinoma__virilizing_syndrome_producing  
    8p119p12Cosmic_SVu(8;9)(p11;p12)  Cosmic_SV [COST228306]haematopoietic_and_lymphoid_tissue__NSlymphoid_neoplasm__adult_T_cell_lymphoma-leukaemia  
    8p219p12Cosmic_SVu(8;9)(p21;p12)  Cosmic_SV [COST375315]breast__NScarcinoma__ductal_carcinoma [COSU652]
    8q129p12Cosmic_SVu(8;9)(q12;p12)  Cosmic_SV [COST354788]breast__NScarcinoma__ductal_carcinoma [COSU652]
    8q229p12Cosmic_SVu(8;9)(q22;p12)  Cosmic_SV [COST737476]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p1210p15Cosmic_SVu(9;10)(p12;p15)  Cosmic_SV [COST214868]pancreas__NScarcinoma__ductal_carcinoma [COSU382]
    9p1212p13Cosmic_SVu(9;12)(p12;p13)  Cosmic_SV [COST151402]ovary__NScarcinoma__mixed_adenosquamous_carcinoma [COSU585]
    9p1212q21Cosmic_SVu(9;12)(p12;q21)  Cosmic_SV [COST347460]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p1214p13Cosmic_SVu(9;14)(p12;p13)  Cosmic_SV [COST391285]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p1218p11Cosmic_SVu(9;18)(p12;p11)  Cosmic_SV [COST371167]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p121p36Cosmic_SVu(9;1)(p12;p36)  Cosmic_SV [COST462648]pancreas__NScarcinoma__NS [COSU382]
    9p126p12Cosmic_SVu(9;6)(p12;p12)  Cosmic_SV [COST171440]adrenal_gland__adrenal_glandadrenal_cortical_carcinoma__virilizing_syndrome_producing  
    9p128p23Cosmic_SVu(9;8)(p12;p23)  Cosmic_SV [COST563692]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p128q22Cosmic_SVu(9;8)(p12;q22)  Cosmic_SV [COST739131]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p129p12Cosmic_SVu(9)(p12;p12)  Cosmic_SV [COST326752]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p129p12Cosmic_SVu(9)(p12;p12)  Cosmic_SV [COST757425]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p129p12Cosmic_SVu(9)(p12;p12)  Cosmic_SV [COST765957]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p139p12Cosmic_SVu(9)(p13;p12)  Cosmic_SV [COST176098]central_nervous_system__brainglioma__astrocytoma_Grade_IV  
    9p139p12Cosmic_SVu(9)(p13;p12)  Cosmic_SV [COST333600]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p139p12Cosmic_SVu(9)(p13;p12)  Cosmic_SV [COST379079]breast__NScarcinoma__lobular_carcinoma [COSU652]
    9p139p12Cosmic_SVu(9)(p13;p12)  Cosmic_SV [COST564917]prostate__NScarcinoma__adenocarcinoma [COSU537]
    9p219p12Cosmic_SVu(9)(p21;p12)  Cosmic_SV [COST335364]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p239p12Cosmic_SVu(9)(p23;p12)  Cosmic_SV [COST347359]breast__NScarcinoma__ductal_carcinoma [COSU652]
    9p12Xp22Cosmic_SVu(9;X)(p12;p22)  Cosmic_SV [COST376109]breast__NScarcinoma__ductal_carcinoma [COSU652]

    Genes in band 9p12

    (click on headers to reorder columns)
    GoldenPath hg38Band 1Band 2ClassCloneFusionPartner 1Partner 2LinksTopographyMorphologyPubmedOmimAccession
    chr9:39072767-39288303 - 9p12   Gene [G]     CNTNAP3   [Cosmic]     [Omim] [Entrez]
    chr9:39072767-39288303 - 9p12 9p12 Gene [GDB]   CNTNAP3/CNTNAP3 CNTNAP3 CNTNAP3 [Cosmic]
    [FusionGDB]  
        [Omim] [Entrez]
    chr9:39355669-39361962 + 9p12   Gene [G]     SPATA31A1       [Omim] [Entrez]
    chr9:39873853-39876242 + 9p12   Gene [G]     LOC102724238       [Omim] [Entrez]
    chr9:39873857-39875395 + 9p12   Gene [G]     LOC554249       [Omim] [Entrez]

    [ Bold normal : A; Italic normal :G; Italic small : E ]

    X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
    [previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

    External links

    Mitelman Database [NCI] : Breakpoint 9p12

    [ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]
    Gene Expression (MSigDB) in 9p12  [ HTC ]  [ NCI ]  [ INV ]

    Global tables

  • Anomalies list (tabulated txt file)
  • Genes list (tabulated txt file)
  • Anomalies list - limited to abnormalities with gene fusions(tabulated txt file)
  • Genes list - limited to genes fusions (tabulated txt file)
  • list of gene fusions for each gene (with origins of the data)
  • list of gene fusions by origin (with topography and morphology)

    References

    Contributor(s)

    Writtenmay 2012Philippe Dessen
      
    Updatedavril 2019Philippe Dessen and Jean-Loup Huret

    Citation

    This paper should be referenced as such :
    Dessen P and Huret JL. Chromosomal band 9p12. Atlas Genet Cytogenet Oncol Haematol. July 2012.
    URL : http://atlasgeneticsoncology.org/Bands/9p12.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : jeu. avril 25 12:26:33 CEST 2019


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