Chromosome Y

Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ENTITIES: by Chromosome band

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22

Chromosome Y

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Band Yq11

chrY:10400000-26600000 (16200 Kb)

Chromosomal abnormalities in band Yq11

Genes in band Yq11 (reference hg38)

External links

References

Chromosomal abnormalities in band Yq11

(click on headers to reorder columns)

Band 1	Band 2	Class	Entity	Partner 1	Partner 2	Links	Topography	Morphology	[PubMed]	[Study]
Yq11		dbCRID	del(Y)(q11)			10343			[PubMed]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST115580]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST121769]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST122320]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST123872]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST124813]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST124814]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST126059]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST128175]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST128190]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST166376]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU586]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST166674]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU586]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST184039]	skin__NS	carcinoma__NS		[COSU656]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST186915]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU650]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST186915]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU661]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST187565]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU650]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST187565]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU661]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST215197]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST220718]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST220847]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST450953]	pancreas__NS	carcinoma__NS		[COSU382]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST452975]	pancreas__NS	carcinoma__NS		[COSU382]
Yq11		Cosmic_SV	del(Y)(q11)			Cosmic_SV [COST470823]	liver__NS	carcinoma__NS		[COSU322]
Yq11		Mitelman	del(Y)(q11)			Mitelman (CGAP)		Acute lymphoblastic leukemia/lymphoblastic lymphoma
Yq11	Yq11	Cosmic_SV	dup(Y)(q11q11)			Cosmic_SV [COST120739]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	Yq11	Cosmic_SV	dup(Y)(q11q11)			Cosmic_SV [COST128189]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11		Cosmic_SV	ins(Y)(q11)			Cosmic_SV [COST189879]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
Yp11	Yq11	dbCRID	inv(Y)(p11q11)			10761			[PubMed]
Yq11		Cosmic_SV	inv(Y)(q11)			Cosmic_SV [COST190344]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
Yq11		Cosmic_SV	inv(Y)(q11)			Cosmic_SV [COST472204]	liver__NS	carcinoma__NS		[COSU322]
Yq11	Yq11	Cosmic_SV	inv(Y)(q11q11)			Cosmic_SV [COST115569]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	Yq11	Cosmic_SV	inv(Y)(q11q11)			Cosmic_SV [COST124219]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	Yq11	Cosmic_SV	inv(Y)(q11q11)			Cosmic_SV [COST128174]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	Yq11	Cosmic_SV	inv(Y)(q11q11)			Cosmic_SV [COST130582]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	Yq11	Cosmic_SV	inv(Y)(q11q11)			Cosmic_SV [COST133023]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yp11	Yq11	dbCRID	r(Y)(p11q11)			10006			[PubMed]
Yp11	Yq11	dbCRID	r(Y)(p11q11)			10007			[PubMed]
Yp11	Yq11	dbCRID	r(Y)(p11q11)			10010		Azoospermia	[PubMed]
Xp22	Yq11	dbCRID	t(X;Y)(p22.2;q11.2)			11763		Microphthalmia with Linear Skin Defects (MLS)	[PubMed]
Xp22	Yq11	dbCRID	t(X;Y)(p22.3;q11.2)			10273			[PubMed]
Xp22	Yq11	dbCRID	t(X;Y)(p22.3;q11.2)			10632			[PubMed]
Xp22	Yq11	dbCRID	t(X;Y)(p22;q11)			11981		Turner Syndrome	[PubMed]
Xp22	Yq11	dbCRID	t(X;Y)(p22;q11)			11982		Turner Syndrome	[PubMed]
Xp22	Yq11	dbCRID	t(X;Y)(p22;q11)			11983		Turner Syndrome	[PubMed]
Xp22	Yq11	ChiTaRS	t(X;Y)(p22;q11)			ChiTaRS		-	[PubMed]
Xq13	Yq11	dbCRID	t(X;Y)(q13.1;q11.223)			11289		Premature Ovarian Failure	[PubMed]
Xq28	Yq11	dbCRID	t(X;Y)(q28;q11.21)			10634			[PubMed]
Yq11	10q21	Mitelman	t(Y;10)(q11;q21)	ANK3	USP9Y	Mitelman (CGAP) [TCGA]	Prostate	Adenocarcinoma	[PubMed]
Yq11	12q24	Mitelman	t(Y;12)(q11;q24)	KDM2B	UTY	Mitelman (CGAP)		Chronic lymphocytic leukemia	[PubMed]
Yq11	17q22	dbCRID	t(Y;17)(q11.2;q22)			10406		Hepatocellular Carcinoma	[PubMed]
Yq11	17q24	dbCRID	t(Y;17)(q11.2;q24.3)			10887		Acampomelic Form of Campomelic Dysplasia	[PubMed]
Yq11	4q21	dbCRID	t(Y;4)(q11.2;q21)			10860		Epileptic Encephalopathy	[PubMed]
Yq11	5q33	dbCRID	t(Y;5)(q11.2;q33)			11620		Dupuytren Contracture	[PubMed]
Yq11	8p23	dbCRID	t(Y;8)(q11.23;p23.1)			11012			[PubMed]
Yq11	Yq11	Mitelman	t(Y;Y)(q11;q11)	NLGN4Y	TXLNGY	Mitelman (CGAP) [TCGA]	Skin	Malignant melanoma	[PubMed]
Yq11	Yq11	Mitelman	t(Y;Y)(q11;q11)	TTTY15	USP9Y	Mitelman (CGAP)	Prostate	Adenocarcinoma	[PubMed]
Yq11	Yq11	Mitelman	t(Y;Y)(q11;q11)	USP9Y	TTTY15	Mitelman (CGAP)	Prostate	Adenocarcinoma	[PubMed]
10p11	Yq11	Cosmic_SV	u(10;Y)(p11;q11)			Cosmic_SV [COST120164]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
10p15	Yq11	Cosmic_SV	u(10;Y)(p15;q11)			Cosmic_SV [COST159969]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
11q22	Yq11	Cosmic_SV	u(11;Y)(q22;q11)			Cosmic_SV [COST114678]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
11q22	Yq11	Cosmic_SV	u(11;Y)(q22;q11)			Cosmic_SV [COST137693]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
12p13	Yq11	Cosmic_SV	u(12;Y)(p13;q11)			Cosmic_SV [COST237760]	bone__NS	osteosarcoma__NS	[PubMed]
12q24	Yq11	Cosmic_SV	u(12;Y)(q24;q11)			Cosmic_SV [COST224169]	haematopoietic_and_lymphoid_tissue__NS	lymphoid_neoplasm__chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma	[PubMed]	[COSU340]
13q33	Yq11	Cosmic_SV	u(13;Y)(q33;q11)			Cosmic_SV [COST237877]	bone__NS	osteosarcoma__NS	[PubMed]
13q33	Yq11	Cosmic_SV	u(13;Y)(q33;q11)			Cosmic_SV [COST237926]	bone__NS	osteosarcoma__NS	[PubMed]
15q21	Yq11	Cosmic_SV	u(15;Y)(q21;q11)			Cosmic_SV [COST175531]	central_nervous_system__brain	glioma__astrocytoma_Grade_IV	[PubMed]
15q21	Yq11	Cosmic_SV	u(15;Y)(q21;q11)			Cosmic_SV [COST175558]	central_nervous_system__brain	glioma__astrocytoma_Grade_IV	[PubMed]
15q21	Yq11	Cosmic_SV	u(15;Y)(q21;q11)			Cosmic_SV [COST191078]	prostate__NS	carcinoma__adenocarcinoma		[COSU538]
15q23	Yq11	Cosmic_SV	u(15;Y)(q23;q11)			Cosmic_SV [COST144864]	ovary__NS	carcinoma__mixed_adenosquamous_carcinoma		[COSU585]
16p11	Yq11	Cosmic_SV	u(16;Y)(p11;q11)			Cosmic_SV [COST122656]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
18p11	Yq11	Cosmic_SV	u(18;Y)(p11;q11)			Cosmic_SV [COST186651]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU650]
18p11	Yq11	Cosmic_SV	u(18;Y)(p11;q11)			Cosmic_SV [COST186651]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU661]
19q13	Yq11	Cosmic_SV	u(19;Y)(q13;q11)			Cosmic_SV [COST193244]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
20p11	Yq11	Cosmic_SV	u(20;Y)(p11;q11)			Cosmic_SV [COST444107]	liver__NS	carcinoma__NS		[COSU322]
22q12	Yq11	Cosmic_SV	u(22;Y)(q12;q11)			Cosmic_SV [COST220439]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
5p12	Yq11	Cosmic_SV	u(5;Y)(p12;q11)			Cosmic_SV [COST131998]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
5q33	Yq11	Cosmic_SV	u(5;Y)(q33;q11)			Cosmic_SV [COST237813]	bone__NS	osteosarcoma__NS	[PubMed]
5q33	Yq11	Cosmic_SV	u(5;Y)(q33;q11)			Cosmic_SV [COST237858]	bone__NS	osteosarcoma__NS	[PubMed]
5q35	Yq11	Cosmic_SV	u(5;Y)(q35;q11)			Cosmic_SV [COST468258]	liver__NS	carcinoma__NS		[COSU322]
6p25	Yq11	Cosmic_SV	u(6;Y)(p25;q11)			Cosmic_SV [COST237797]	bone__NS	osteosarcoma__NS	[PubMed]
6p25	Yq11	Cosmic_SV	u(6;Y)(p25;q11)			Cosmic_SV [COST237849]	bone__NS	osteosarcoma__NS	[PubMed]
7q36	Yq11	Cosmic_SV	u(7;Y)(q36;q11)			Cosmic_SV [COST222271]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
8q24	Yq11	Cosmic_SV	u(8;Y)(q24;q11)			Cosmic_SV [COST27967]	large_intestine__NS	carcinoma__adenocarcinoma	[PubMed]
8q24	Yq11	Cosmic_SV	u(8;Y)(q24;q11)			Cosmic_SV [COST27981]	large_intestine__NS	carcinoma__adenocarcinoma	[PubMed]
9p21	Yq11	Cosmic_SV	u(9;Y)(p21;q11)			Cosmic_SV [COST123433]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
9p21	Yq11	Cosmic_SV	u(9;Y)(p21;q11)			Cosmic_SV [COST128260]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
9p21	Yq11	Cosmic_SV	u(9;Y)(p21;q11)			Cosmic_SV [COST219392]	haematopoietic_and_lymphoid_tissue__NS	lymphoid_neoplasm__chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma	[PubMed]	[COSU340]
9p21	Yq11	Cosmic_SV	u(9;Y)(p21;q11)			Cosmic_SV [COST237876]	bone__NS	osteosarcoma__NS	[PubMed]
9p22	Yq11	Cosmic_SV	u(9;Y)(p22;q11)			Cosmic_SV [COST125709]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
9p22	Yq11	Cosmic_SV	u(9;Y)(p22;q11)			Cosmic_SV [COST125863]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
9p23	Yq11	Cosmic_SV	u(9;Y)(p23;q11)			Cosmic_SV [COST115469]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
9p23	Yq11	Cosmic_SV	u(9;Y)(p23;q11)			Cosmic_SV [COST118302]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
9p24	Yq11	Cosmic_SV	u(9;Y)(p24;q11)			Cosmic_SV [COST115454]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	12q24	Cosmic_SV	u(Y;12)(q11;q24)			Cosmic_SV [COST220960]	haematopoietic_and_lymphoid_tissue__NS	lymphoid_neoplasm__chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma	[PubMed]	[COSU340]
Yq11	17q23	Cosmic_SV	u(Y;17)(q11;q23)			Cosmic_SV [COST123904]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU328]
Yq11	18q22	Cosmic_SV	u(Y;18)(q11;q22)			Cosmic_SV [COST186811]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU650]
Yq11	18q22	Cosmic_SV	u(Y;18)(q11;q22)			Cosmic_SV [COST186811]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU661]
Yq11	20q11	Cosmic_SV	u(Y;20)(q11;q11)			Cosmic_SV [COST186978]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU650]
Yq11	20q11	Cosmic_SV	u(Y;20)(q11;q11)			Cosmic_SV [COST186978]	pancreas__NS	carcinoid-endocrine_tumour__NS		[COSU661]
Yq11	7q36	Cosmic_SV	u(Y;7)(q11;q36)			Cosmic_SV [COST319814]	pancreas__NS	carcinoma__ductal_carcinoma		[COSU382]
Yq11	9p21	Cosmic_SV	u(Y;9)(q11;p21)			Cosmic_SV [COST454864]	pancreas__NS	carcinoma__NS		[COSU382]
Yp11	Yq11	Cosmic_SV	u(Y)(p11;q11)			Cosmic_SV [COST166867]	central_nervous_system__brain	primitive_neuroectodermal_tumour-medulloblastoma__NS		[COSU379]
Yp11	Yq11	Cosmic_SV	u(Y)(p11;q11)			Cosmic_SV [COST237927]	bone__NS	osteosarcoma__NS	[PubMed]

Genes in band Yq11

(click on headers to reorder columns)

GoldenPath hg38	Band 1	Band 2	Class	Fusion	Partner 1	Partner 2	Links	Topography	Morphology	Pubmed	Omim	Accession
chrY:12406116-12421590 -	Yq11		Gene [G]		GYG2P1		[Cosmic]				[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [FC]	TTTY15/USP9Y	TTTY15	USP9Y	[FusCancer]		Prostate cancer\|Hepatocellular cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Melanoma\|Melanoma\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Lung cancer\|Lung cancer\|Lung cancer\|Prostate cancer\|Prostate cancer\|Hepatocellular cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11		Gene [G]		TTTY15						[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	TTTY15	USP9Y		Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	TTTY15	USP9Y		Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	TTTY15	USP9Y		Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	TTTY15	USP9Y		Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [M]	TTTY15/USP9Y	TTTY15	USP9Y	[Mitelman]	Prostate	Adenocarcinoma	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [M]	USP9Y/TTTY15	TTTY15	USP9Y	[Mitelman]	Prostate	Adenocarcinoma	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		esophagus	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		esophagus	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		gall bladder	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12662367-12692224 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	TTTY15	USP9Y		gall bladder	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [FC]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic] [FusCancer]		Prostate cancer\|Hepatocellular cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Melanoma\|Melanoma\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Lung cancer\|Lung cancer\|Lung cancer\|Prostate cancer\|Prostate cancer\|Hepatocellular cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer\|Prostate cancer	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11		Gene [G]		USP9Y		[Cosmic]				[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [LAI]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	Prostate		[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	10q21	Gene [M]	ANK3/USP9Y	USP9Y	ANK3	[Cosmic] [Mitelman]	Prostate	Adenocarcinoma	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [M]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic] [Mitelman]	Prostate	Adenocarcinoma	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [M]	USP9Y/TTTY15	USP9Y	TTTY15	[Cosmic] [Mitelman]	Prostate	Adenocarcinoma	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	esophagus	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	esophagus	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	gall bladder	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	Yq11	Gene [NOR]	TTTY15/USP9Y	USP9Y	TTTY15	[Cosmic]	gall bladder	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:12701231-12860843 +	Yq11	10q21	Gene [TF]	ANK3/USP9Y	USP9Y	ANK3	[Cosmic] [TCGA]	[TCGA-PRAD]		[PubMed]	[Omim]	[Entrez]
chrY:12903999-12920478 +	Yq11	22q12	Gene [CT]	DDX3Y/DEPDC5	DDX3Y	DEPDC5	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:12903999-12920478 +	Yq11		Gene [G]		DDX3Y		[Cosmic]				[Omim]	[Entrez]
chrY:13248379-13480670 -	Yq11	8q24	Gene [CT]	NOV/UTY	UTY	NOV	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:13248379-13480670 -	Yq11	15q13	Gene [CT]	UTY/OTUD7A	UTY	OTUD7A	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:13248379-13480670 -	Yq11	Yq11	Gene [CT]	UTY/UTY	UTY	UTY	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:13248379-13480670 -	Yq11		Gene [G]		UTY		[Cosmic]				[Omim]	[Entrez]
chrY:13248379-13480670 -	Yq11	12q24	Gene [M]	KDM2B/UTY	UTY	KDM2B	[Cosmic] [Mitelman]		Chronic lymphocytic leukemia	[PubMed]	[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [AM]	TMSB4Y/KALP	TMSB4Y	KALP		[TCGA-HNSC]			[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [AM]	TMSB4Y/KALP	TMSB4Y	KALP		[TCGA-KICH]			[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [AM]	TMSB4Y/KALP	TMSB4Y	KALP		[TCGA-LGG]			[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [AM]	TMSB4Y/KALP	TMSB4Y	KALP		[TCGA-PRAD]			[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [AM]	TMSB4Y/KALP	TMSB4Y	KALP		[TCGA-PRAD]			[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [G]		TMSB4Y						[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [NOR]	TMSB4Y/KALP	TMSB4Y	KALP		ESC	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [NOR]	TMSB4Y/KALP	TMSB4Y	KALP		lung	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:13703567-13706022 +	Yq11		Gene [NOR]	TMSB4Y/KALP	TMSB4Y	KALP		testis	Normal tissue	[PubMed]	[Omim]	[Entrez]
chrY:13985772-13986508 -	Yq11		Gene [G]		VCY1B		[Cosmic]				[Omim]	[Entrez]
chrY:13985772-13986512 -	Yq11		Gene [G]		VCY		[Cosmic]				[Omim]	[Entrez]
chrY:14622021-14733549 +	Yq11	Yq11	Gene [AM]	NLGN4Y/TXLNGY	NLGN4Y	TXLNGY	[Cosmic]	[TCGA-SKCM]			[Omim]	[Entrez]
chrY:14622021-14733549 +	Yq11	21q22	Gene [CT]	RUNX1/NLGN4Y	NLGN4Y	RUNX1	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:14622021-14733549 +	Yq11	21q22	Gene [G]	RUNX1/NLGN4Y	NLGN4Y	RUNX1	[Cosmic]				[Omim]	[Entrez]
chrY:14622021-14733549 +	Yq11	Yq11	Gene [M]	NLGN4Y/TXLNGY	NLGN4Y	TXLNGY	[Cosmic] [Mitelman]	Skin	Malignant melanoma	[PubMed]	[Omim]	[Entrez]
chrY:14622021-14733549 +	Yq11	Yq11	Gene [TF]	NLGN4Y/TXLNGY	NLGN4Y	TXLNGY	[Cosmic] [TCGA]	[TCGA-SKCM]		[PubMed]	[Omim]	[Entrez]
chrY:14793642-14804033 -	Yq11		Gene [G]		NLGN4Y-AS1						[Omim]	[Entrez]
chrY:17500958-17516742 +	Yq11		Gene [G]		FAM41AY1						[Omim]	[Entrez]
chrY:17500958-17516742 +	Yq11		Gene [G]		FAM41AY2						[Omim]	[Entrez]
chrY:17575161-17579452 -	Yq11		Gene [G]		FAM224B						[Omim]	[Entrez]
chrY:17575185-17579473 -	Yq11		Gene [G]		FAM224A						[Omim]	[Entrez]
chrY:17768980-17770560 -	Yq11		Gene [G]		XKRY2						[Omim]	[Entrez]
chrY:17768980-17770560 -	Yq11		Gene [G]		XKRY						[Omim]	[Entrez]
chrY:17878260-17880219 -	Yq11		Gene [G]		CDY2B		[Cosmic]				[Omim]	[Entrez]
chrY:17878261-17880220 -	Yq11		Gene [G]		CDY2A		[Cosmic]				[Omim]	[Entrez]
chrY:18546688-18548592 +	Yq11		Gene [G]		HSFY1		[Cosmic]				[Omim]	[Entrez]
chrY:18546691-18588963 +	Yq11		Gene [G]		HSFY2		[Cosmic]				[Omim]	[Entrez]
chrY:18581206-18590521 -	Yq11		Gene [G]		TTTY9A						[Omim]	[Entrez]
chrY:18581206-18590521 -	Yq11		Gene [G]		TTTY9B						[Omim]	[Entrez]
chrY:18932699-19077547 -	Yq11	2p22	Gene [CT]	TTTY14/CRIM1	TTTY14	CRIM1	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	1q21	Gene [CT]	GATAD2B/TTTY14	TTTY14	GATAD2B	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	15q22	Gene [CT]	TTTY14/MEGF11	TTTY14	MEGF11	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	6q21	Gene [CT]	MFSD4B/TTTY14	TTTY14	MFSD4B	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	11q13	Gene [CT]	PGM2L1/TTTY14	TTTY14	PGM2L1	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	11p15	Gene [CT]	TTTY14/RHOG	TTTY14	RHOG	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	Yq11	Gene [CT]	TTTY14/TTTY14	TTTY14	TTTY14	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11	Yq11	Gene [CT]	TTTY14/TTTY14	TTTY14	TTTY14	[ChiTaRS]				[Omim]	[GenBank]
chrY:18932699-19077547 -	Yq11		Gene [G]		TTTY14						[Omim]	[Entrez]
chrY:18991033-18992697 -	Yq11		Gene [G]		CD24P4						[Omim]	[Entrez]
chrY:19041681-19044402 -	Yq11		Gene [G]		LOC107987345						[Omim]	[Entrez]
chrY:19455431-19503153 -	Yq11		Gene [G]		BCORP1		[Cosmic]				[Omim]	[Entrez]
chrY:19567382-19590423 +	Yq11	Yq11	Gene [AM]	NLGN4Y/TXLNGY	TXLNGY	NLGN4Y		[TCGA-SKCM]			[Omim]	[Entrez]
chrY:19567382-19590423 +	Yq11	4q21	Gene [CT]	CCNI/TXLNGY	TXLNGY	CCNI	[ChiTaRS]				[Omim]	[GenBank]
chrY:19567382-19590423 +	Yq11	Yq11	Gene [CT]	TXLNGY/TXLNGY	TXLNGY	TXLNGY	[ChiTaRS]				[Omim]	[GenBank]
chrY:19567382-19590423 +	Yq11		Gene [G]		TXLNGY						[Omim]	[Entrez]
chrY:19567382-19590423 +	Yq11	Yq11	Gene [M]	NLGN4Y/TXLNGY	TXLNGY	NLGN4Y	[Mitelman]	Skin	Malignant melanoma	[PubMed]	[Omim]	[Entrez]
chrY:19705415-19744939 -	Yq11	11q13	Gene [CT]	KDM5D/PRDX5	KDM5D	PRDX5	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:19705415-19744939 -	Yq11		Gene [G]		KDM5D		[Cosmic]				[Omim]	[Entrez]
chrY:20465668-20519228 -	Yq11		Gene [G]		TTTY10						[Omim]	[Entrez]
chrY:20465668-20519228 -	Yq11		Gene [PM]	/	TTTY10					[PubMed]	[Omim]	[Entrez]
chrY:20575711-20593154 +	Yq11	Yq11	Gene [CT]	EIF1AY/EIF1AY	EIF1AY	EIF1AY	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:20575711-20593154 +	Yq11		Gene [G]		EIF1AY		[Cosmic]				[Omim]	[Entrez]
chrY:20756068-20781032 +	Yq11		Gene [G]		RPS4Y2		[Cosmic]				[Omim]	[Entrez]
chrY:21038289-21044724 -	Yq11		Gene [E]		ERVH-6						[Omim]	[Entrez]
chrY:21382974-21386360 -	Yq11	Yq11	Gene [AM]	RBMY2EP/PRORY	PRORY	RBMY2EP		[TCGA-HNSC]			[Omim]	[Entrez]
chrY:21382974-21386360 -	Yq11		Gene [G]		PRORY						[Omim]	[Entrez]
chrY:21395148-21401562 -	Yq11	Yq11	Gene [AM]	RBMY2EP/PRORY	RBMY2EP	PRORY		[TCGA-HNSC]			[Omim]	[Entrez]
chrY:21395148-21401562 -	Yq11		Gene [G]		RBMY2EP						[Omim]	[Entrez]
chrY:21511338-21525786 +	Yq11		Gene [G]		RBMY1A1		[Cosmic]				[Omim]	[Entrez]
chrY:21511338-21525554 +	Yq11		Gene [G]		RBMY1B		[Cosmic]				[Omim]	[Entrez]
chrY:21511338-21525786 +	Yq11		Gene [G]		RBMY1D						[Omim]	[Entrez]
chrY:21511378-21525786 +	Yq11		Gene [G]		RBMY1E		[Cosmic]				[Omim]	[Entrez]
chrY:21583600-21594666 -	Yq11		Gene [G]		TTTY13						[Omim]	[Entrez]
chrY:22071756-22096007 -	Yq11		Gene [G]		PRY2		[Cosmic]				[Omim]	[Entrez]
chrY:22071756-22096007 -	Yq11		Gene [G]		PRY						[Omim]	[Entrez]
chrY:22101692-22147484 -	Yq11		Gene [G]		LOC101929148						[Omim]	[Entrez]
chrY:22144965-22146831 +	Yq11		Gene [G]		TTTY6						[Omim]	[Entrez]
chrY:22144987-22146834 +	Yq11		Gene [G]		TTTY6B						[Omim]	[Entrez]
chrY:22168542-22182942 -	Yq11		Gene [G]		RBMY1F		[Cosmic]				[Omim]	[Entrez]
chrY:22168774-22183008 -	Yq11		Gene [G]		RBMY1J		[Cosmic]				[Omim]	[Entrez]
chrY:22296798-22298876 -	Yq11		Gene [G]		TTTY5						[Omim]	[Entrez]
chrY:22308859-22316205 +	Yq11		Gene [G]		RBMY2FP						[Omim]	[Entrez]
chrY:22316678-22320384 +	Yq11		Gene [G]		LOC100652931						[Omim]	[Entrez]
chrY:22851584-22852715 +	Yq11		Gene [G]		TTTY17A						[Omim]	[Entrez]
chrY:22851584-22852715 +	Yq11		Gene [G]		TTTY17B						[Omim]	[Entrez]
chrY:22851584-22852715 +	Yq11		Gene [G]		TTTY17C						[Omim]	[Entrez]
chrY:22936455-22973284 +	Yq11		Gene [G]		TTTY4B						[Omim]	[Entrez]
chrY:22936455-22973284 +	Yq11		Gene [G]		TTTY4C						[Omim]	[Entrez]
chrY:22936455-22973284 +	Yq11		Gene [G]		TTTY4						[Omim]	[Entrez]
chrY:22984263-23005463 +	Yq11		Gene [G]		BPY2B		[Cosmic]				[Omim]	[Entrez]
chrY:22984263-23005463 +	Yq11		Gene [G]		BPY2C		[Cosmic]				[Omim]	[Entrez]
chrY:22984263-23005463 +	Yq11		Gene [G]		BPY2		[Cosmic]				[Omim]	[Entrez]
chrY:23129355-23199092 -	Yq11		Gene [G]		DAZ1		[Cosmic]				[Omim]	[Entrez]
chrY:23129355-23199107 -	Yq11	19p13	Gene [CT]	SHD/DAZ4	DAZ4	SHD	[Cosmic] [ChiTaRS]				[Omim]	[GenBank]
chrY:23129355-23199107 -	Yq11		Gene [G]		DAZ4		[Cosmic]				[Omim]	[Entrez]
chrY:23219434-23291356 +	Yq11		Gene [G]		DAZ3		[Cosmic]				[Omim]	[Entrez]
chrY:23219457-23291356 +	Yq11		Gene [G]		DAZ2		[Cosmic]				[Omim]	[Entrez]
chrY:23936727-23941622 -	Yq11		Gene [G]		TTTY3B						[Omim]	[Entrez]
chrY:23936727-23941622 -	Yq11		Gene [G]		TTTY3						[Omim]	[Entrez]
chrY:24045230-24048014 -	Yq11		Gene [G]		CDY1		[Cosmic]				[Omim]	[Entrez]
chrY:24045793-24048014 -	Yq11		Gene [G]		CDY1B		[Cosmic]				[Omim]	[Entrez]
chrY:24183434-24187231 -	Yq11		Gene [G]		CSPG4P1Y						[Omim]	[Entrez]
chrY:24209967-24214831 -	Yq11		Gene [G]		GOLGA2P2Y						[Omim]	[Entrez]
chrY:24209967-24214831 -	Yq11		Gene [G]		GOLGA2P3Y						[Omim]	[Entrez]
chrY:25975549-25988067 +	Yq11		Gene [G]		PRYP4						[Omim]	[Entrez]

[ Bold normal : A; Italic normal :G; Italic small : E ]

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 [previous] Y Yp Yq Yp11 Yq11 Yq12 [next]

External links

Mitelman Database [NCI] : Breakpoint Yq11

[ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]

Gene Expression (MSigDB) in Yq11 [ HTC ] [ NCI ] [ INV ]

The human genome used in these documents corresponds to the hg38 (Build GRCh38). A more precise informtion about assemby can be found at Human genome Overview.
The limits of cytogenetic bands correspond to data from UCSC : cytoBand.txt.gz

ISCN Abbreviated Terms and Symbols [NCI]

[A]Atlas - Annotated genes

[G]Atlas - Genes implicated in cancer

[E] Others genes (Entrez Gene - NCBI

[M] Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer [ CGAP May 2017] and "Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer" (2012). Mitelman F, Johansson B and Mertens F (Eds.)" [Sept 2016]

[N] Mitelman Database of Chromosome Aberrations (/number)

[COS] Catalogue Of Somatic Mutations In Cancer [v81]

[COF] Catalogue Of Somatic Mutations In Cancer : Gene Fusions [v81] [PubMed 2017]

[CSV] Catalogue Of Somatic Mutations In Cancer : Structural variations (extracted frorm CosmicStructExport.tsv) [v81])

[CEN] Cancer Gene Census [v81]

[TF] TCGA Fusions [PubMed 2014] (the fusions are limited to tier 1 and 2)

[TIC] TicDB [PubMed 2007]

[H2] ChimerDB_2.0 [PubMed 2006] [PubMed 2010] [H3] ChimerDB_3.0 [PubMed 2017]

[K] dbCRID [PubMed 2011]

[CT] ChiTARS-2.1 [PubMed 2012] [PubMed 2014]

[CT] ChiTARS-3.1 [PubMed 2016]

[LAI] Fusion transcript loci share many genomic Features with non-fusion loci. Lai et al. BMC Genomics 2015 [PubMed 2015]

[PM] Gene Fusions from Pubmed abstract mining

[L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57. [PubMed]

[S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5. [PubMed]

[V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12. [PubMed]

[GT] Cell Lines (Genentech) [Pubmed 2015] Nature Biotech Suppl.Table8

[FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)

[NOR][PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)

[URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.

[AM][PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.

Contributor(s)

Written may 2012 Philippe Dessen

Updated juin 2017 Philippe Dessen and Jean-Loup Huret

Citation

This paper should be referenced as such :
Dessen P and Huret JL. Chromosomal band Yq11. Atlas Genet Cytogenet Oncol Haematol. July 2012.
URL : http://atlasgeneticsoncology.org/Bands/Yq11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : mer. juin 7 12:33:30 CEST 2017

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Written	may 2012	Philippe Dessen

Updated	juin 2017	Philippe Dessen and Jean-Loup Huret