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ADAM23 (ADAM metallopeptidase domain 23)

Identity

Other namesMDC3
HGNC (Hugo) ADAM23
Location 2q33
Location_base_pair Starts at 207016613 and ends at 207190924 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

 
  DNA of ADAM23 gene composed of 26 coding exons.
Description DNA contains 174312 bp composed of 26 coding exons.
Transcription 3059 bp mRNA transcribed in centromeric to telomeric orientation; 2499 bp open reading frame. There are two isoforms of human ADAM23 (ADAM23alpha), i.e. ADAM23beta and ADAM23gamma. ADAM23beta is consistent with ADAM23alpha in domain structure except for a different transmembrane domain. ADAM23gamma, without transmembrane domain, is predicted to be a secreted form of ADAM23. ADAM23gamma is formed by skipping both exons enconding transmembrane domain in RNA splicing.
Pseudogene No pseudogenes reported.

Protein

 
  Domain structure of ADAM23. Its deduced amino acid sequence lacks essential residues conserved in metalloproteinases (Cal S. et al., 2000).
Description 832amino acid protein including a hydrophobic transmembrane domain and eight potential N-linked glycosylation sites. This protein has multiple domain structures including a pro-, a metalloproteinase-like, a desintegrin-like, a cysteine-rich, an epidermal growth factor-like, a transmembrane and a cytoplasmatic domain. Within the metalloproteinase-like domain, ADAM23 lacks HEXXHXXGXXH active-site amino acids for zinc-binding, which is critical for the proteinase activity. So, the metalloproteinase domain is inactive, suggesting that it is exclusively involved in cell adhesion processes rather than in protease-mediated events.
Expression Highly expressed in the brain and weakly expressed in the heart. In the brain, expressed prominently in the amygdala, caudate nucleus, hypothalamus, thalamus, cerebral cortex and occipital pole.
Localisation Cell membrane; single-pass type I membrane protein (Potential). Isoform Gamma: Secreted protein.
Function May play a role in cell-cell and cell-matrix interactions. This is a non-catalytic metalloprotease-like protein.
Homology H. sapiens: ADAM23
P.troglodytes: ADAM23
C.lupus: LOC607871
M.musculus: ADAM23
R.novergicus: ADAM23
G.gallus: LOC424099

Mutations

Note There are one SNP on exon 1 in the amino acid position 1 with function start codon and two SNPs on exon 23 in the amino acid position 695 with functions synonymous and contig reference.

Implicated in

Entity gastric tumors.
Note Hypermethylation of the promoter region of ADAM 23 gene, along with decreased expression, occurs in primary gastric tumors compared with noncancerous gastric tissue.
Prognosis Not determined.
Cytogenetics Not determined.
Hybrid/Mutated Gene Not determined.
Oncogenesis Loss of ADAM23, which is likely to play an important role regard to cell-cell and cell- extracellular matrix interactions in gastric tissue as well, might be essential for the progression of gastric cancer.
  
Entity breast tumors.
Note Hypermethylation of the promoter region of ADAM23 gene, along with decreased expression, occurs in primary breast tumors and primary breast tumors with a more advanced grade have higher degree of methylation.
Cytogenetics Not determined.
Hybrid/Mutated Gene Not determined.
Oncogenesis Primary breast tumors with a more advanced grade have a higher degree of methylation, suggesting that the adhesion molecule ADAM23 may be downregulated during the progression of breast cancer.
  
Entity Head and neck cancer.
Note Hypermethylation of the promoter region of ADAM23 gene, along with decreased expression, occurs in Head and neck cancer and the frequency of hypermethylation of ADAM23 gene is higher in primary head and neck tumors with a more advanced grade
Cytogenetics Not determined.
Hybrid/Mutated Gene Not determined.
Oncogenesis Hypermethylation of the ADAM23 gene could lead to tumor progression, because the neoplastic cells would lose the contact inhibition. As a consequence, these cells would proliferate in an uncontrolled manner; once the proliferation of most cancer cells is no longer sensitive to density-dependent inhibition, a permissive environment for cell proliferation is created.
  

External links

Nomenclature
HGNC (Hugo)ADAM23   202
Entrez_Gene (NCBI)ADAM23  8745  ADAM metallopeptidase domain 23
Cards
AtlasADAM23ID44041ch2q33
GeneCards (Weizmann)ADAM23
Ensembl (Hinxton)ENSG00000114948 [Gene_View]  ADAM23 [Vega]
AceView (NCBI)ADAM23
Genatlas (Paris)ADAM23
euGene (Indiana)8745
SOURCE (Stanford)NM_003812
Gene Expression (Array Express) ENSG00000114948
Genomic and cartography
GoldenPath (UCSC)ADAM23  -  2q33   chr2:207016613-207190924 +  2q33   [Description]    (hg18-Mar_2006)
EnsemblADAM23 - 2q33 [CytoView]
Mapping of homologs : NCBIADAM23 [Mapview]
OMIM603710   
Gene and transcription
Gene : Genbank (Entrez)AB009672 AJ005580 AK129906 AK296844 BC132763
Reference sequence (RefSeq transcript) :SRSNM_003812
Reference transcript : EntrezNM_003812
RefSeq genomic : SRSAC_000045 AC_000134 NC_000002 NT_005403 NW_001838863 NW_921618
RefSeq genomic : EntrezAC_000045 AC_000134 NC_000002 NT_005403 NW_001838863 NW_921618
Consensus coding sequences : CCDS NCBIADAM23
Cluster EST : UnigeneHs.591643 [ SRS ] Hs.591643 [ NCBI ]
Alternative Splicing : Fast-db (Paris)14658
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO75077 (SRS) O75077 (Expasy) O75077 (Uniprot)
With graphics : InterProO75077
Splice isoforms : VarSplice FASTAO75077(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ADAM_MEPRO (PS50215)    DISINTEGRIN_1 (PS00427)    DISINTEGRIN_2 (PS50214)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domain pattern : Prosite (Expaxy)ADAM_MEPRO (PS50215)    DISINTEGRIN_1 (PS00427)    DISINTEGRIN_2 (PS50214)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (SRS)ADAM_Cys-rich    Blood-coag_inhib_Disintegrin    EGF-like    EGF-like_reg_CS    EGF_3    Peptidase_M12B    Peptidase_M12B_N   
Domains : Interpro (EBI)ADAM_Cys-rich    Blood-coag_inhib_Disintegrin    EGF-like    EGF-like_reg_CS    EGF_3    Peptidase_M12B    Peptidase_M12B_N   
Related proteins : CluSTrO75077
Domain families : Pfam SRSADAM_CR (PF08516)    Disintegrin (PF00200)    Pep_M12B_propep (PF01562)    Reprolysin (PF01421)   
Domain families : Pfam SangerADAM_CR (PF08516)    Disintegrin (PF00200)    Pep_M12B_propep (PF01562)    Reprolysin (PF01421)   
Domain families : Pfam NCBIpfam08516    pfam00200    pfam01562    pfam01421   
Domain families : Smart EMBLACR (SM00608)  DISIN (SM00050)  EGF (SM00181)  
Blocks (Seattle)O75077
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD04752
Protein Interaction databases
DIP (DOE-UCLA)O75077
IntAct (EBI)O75077
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIADAM23
SNP : GeneSNP UtahADAM23
SNP : HGBaseADAM23
Genetic variants : HAPMAPADAM23
Somatic Mutations in Cancer : COSMICADAM23 
Mutations and Diseases : HGMDADAM23
Hereditary diseases : OMIM603710   
Hereditary diseases : GENETests603710   
Diseases : Genetic AssociationADAM23
General knowledge
Homologs : HomoloGeneADAM23
Homology/Alignments : Family Browser UCSCADAM23
Phylogenetic Trees/Animal Genes : TreeFamADAM23
Chemical/Protein Interactions : CTD8745
Keywords Ontology : AmiGOmetalloendopeptidase activity  integrin binding  protein binding  extracellular region  plasma membrane  integral to plasma membrane  proteolysis  cell adhesion  central nervous system development  zinc ion binding  
Keywords Ontology : EGO-EBImetalloendopeptidase activity  integrin binding  protein binding  extracellular region  plasma membrane  integral to plasma membrane  proteolysis  cell adhesion  central nervous system development  zinc ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesADAM23 Related clones (RZPD - Berlin)
Literature
PubMed15 Pubmed reference(s) in Entrez
PubGeneADAM23

Bibliography

Metalloproteinase-like, disintegrin-like, cysteine-rich proteins MDC2 and MDC3: novel human cellular disintegrins highly expressed in the brain.
Sagane K, Ohya Y, Hasegawa Y, Tanaka I
The Biochemical journal. 1998 ; 334 ( Pt 1) : 93-98.
PMID 9693107
 
The identification of seven metalloproteinase-disintegrin (ADAM) genes from genomic libraries.
Poindexter K, Nelson N, DuBose RF, Black RA, Cerretti DP
Gene. 1999 ; 237 (1) : 61-70.
PMID 10524237
 
ADAM 23/MDC3, a human disintegrin that promotes cell adhesion via interaction with the alphavbeta3 integrin through an RGD-independent mechanism.
Cal S, Freije JM, Lˆ„pez JM, Takada Y, Lˆ„pez-Otˆ‚n C
Molecular biology of the cell. 2000 ; 11 (4) : 1457-1469.
PMID 10749942
 
Epigenetic silencing of the adhesion molecule ADAM23 is highly frequent in breast tumors.
Costa FF, Verbisck NV, Salim AC, Ierardi DF, Pires LC, Sasahara RM, Sogayar MC, Zanata SM, Mackay A, O'Hare M, Soares F, Simpson AJ, Camargo AA
Oncogene. 2004 ; 23 (7) : 1481-1488.
PMID 14661055
 
Two novel isoforms of Adam23 expressed in the developmental process of mouse and human brains.
Sun YP, Deng KJ, Wang F, Zhang J, Huang X, Qiao S, Zhao S
Gene. 2004 ; 325 : 171-178.
PMID 14697522
 
ADAM23, a possible tumor suppressor gene, is frequently silenced in gastric cancers by homozygous deletion or aberrant promoter hypermethylation.
Takada H, Imoto I, Tsuda H, Nakanishi Y, Ichikura T, Mochizuki H, Mitsufuji S, Hosoda F, Hirohashi S, Ohki M, Inazawa J
Oncogene. 2005 ; 24 (54) : 8051-8060.
PMID 16103878
 
Methylation profile of genes CDKN2A (p14 and p16), DAPK1, CDH1, and ADAM23 in head and neck cancer.
Calmon MF, Colombo J, Carvalho F, Souza FP, Filho JF, Fukuyama EE, Camargo AA, Caballero OL, Tajara EH, Cordeiro JA, Rahal P
Cancer genetics and cytogenetics. 2007 ; 173 (1) : 31-37.
PMID 17284367
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written07-2007Calmon Marilia de Freitas, Paula Rahal
Laboratory of Genomics studies - Sao Paulo State University ­ Departament of Biology ­ Sao Jose do Rio Preto- SP- Brasil.

Citation

This paper should be referenced as such :
Marilia de Freitas Calmon, Rahal P . ADAM23 (ADAM metallopeptidase domain 23). Atlas Genet Cytogenet Oncol Haematol. July 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/ADAM23ID44041ch2q33.html

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indexed on : Sat Feb 6 13:44:07 CET 2010

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