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ASPSCR1 (Alveolar soft part sarcoma critical region 1)

Identity

Other namesASPL (Alveolar soft part sarcoma locus)
HGNC (Hugo) ASPSCR1
LocusID (NCBI) 79058
Location 17q25.3
Location_base_pair Starts at 79935426 and ends at 79975282 bp from pter ( according to hg19-Feb_2009)  [Mapping]
 
  Probe(s) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics

DNA/RNA

Description 1872 bp cDNA
Transcription alternative splicing of 47 bp from exon 2 in the 5' untranslated region

Protein

Description 476 amino acids; contains an UBX domain, which may be related to the ubiquitylation pathway
Expression widely expressed in the adult; low expression in fetal tissues

Implicated in

Entity Alveolar soft part sarcoma with ASPSCR1 -TFE3 fusion
Cytogenetics der(X)t(X;17)(p11;q25) is consistently involved; it implicates: 1- the formation of a hybrid gene at the breakpoint, and also, 2- gain in Xp11-pter sequences, and loss of heterozygocity in 11q25-qter, with possible implications
Hybrid/Mutated Gene 5' ASPSCR1-3' TFE3; the reciprocal 5' TFE3 - 3' ASPSCR1 is most often absent. ASPSCR1 is fused in frame to TFE3 exon 3 or 4
Abnormal Protein NH2 term ASPSCR1, fused to the C term of TFE3
Oncogenesis might combine the effect of a fusion protein to that of gene(s) dosage
  
Entity primary renal ASPSCR1-TFE3 tumour
Disease a subset of renal cell carcinoma, which presents with a combination of alveolar soft part sarcoma-like features and epithelial features is found to carry this anomaly
Cytogenetics balanced t(X;17)(p11.2;q25), in contrast with what is found in the alveolar soft part sarcoma (see above)
Hybrid/Mutated Gene 5' ASPSCR1-3' TFE3
Abnormal Protein NH2 term ASPSCR1, fused to the C term of TFE3
  

External links

Nomenclature
HGNC (Hugo)ASPSCR1   13825
Entrez_Gene (NCBI)ASPSCR1  79058  alveolar soft part sarcoma chromosome region, candidate 1
Cards
AtlasASPSCR1ID358
GeneCards (Weizmann)ASPSCR1
Ensembl (Hinxton)ENSG00000169696 [Gene_View]  chr17:79935426-79975282 [Contig_View]  ASPSCR1 [Vega]
AceView (NCBI)ASPSCR1
Genatlas (Paris)ASPSCR1
SOURCE (Stanford)NM_001251888 NM_024083
Genomic and cartography
GoldenPath (UCSC)ASPSCR1  -  17q25.3   chr17:79935426-79975282 +  17q25.3   [Description]    (hg19-Feb_2009)
EnsemblASPSCR1 - 17q25.3 [CytoView]
Mapping of homologs : NCBIASPSCR1 [Mapview]
OMIM606236   606243   
Gene and transcription
Genbank (Entrez)AF324219 AK057403 AK057851 AK090682 AK126967
RefSeq transcript (SRS)NM_001251888 NM_024083
RefSeq transcript (Entrez)NM_001251888 NM_024083
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NG_030375 NT_010663 NW_001838459 NW_004078093
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_030375 NT_010663 NW_001838459 NW_004078093
Consensus coding sequences : CCDS (NCBI)ASPSCR1
Cluster EST : UnigeneHs.298351 [ SRS ] Hs.298351 [ NCBI ]
CGAP (NCI)Hs.298351
Alternative Splicing : Fast-db (Paris)GSHG0012911
Alternative Splicing GalleryENSG00000169696
Gene ExpressionASPSCR1 [ NCBI-GEO ]   ASPSCR1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZE9 (SRS) Q9BZE9 (Uniprot)
NextProtQ9BZE9
With graphics : InterProQ9BZE9
Splice isoforms : SwissVarQ9BZE9(Swissvar)
Domaine pattern : Prosite (SRS)UBX (PS50033)   
Domaine pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (SRS)TUG    UBX   
Domains : Interpro (EBI)TUG    UBX   
Related proteins : CluSTrQ9BZE9
Domain families : Pfam (SRS)TUG (PF11470)    UBX (PF00789)   
Domain families : Pfam (Sanger)TUG (PF11470)    UBX (PF00789)   
Domain families : Pfam (NCBI)pfam11470    pfam00789   
Domain families : Smart (EMBL)UBX (SM00166)  
DMDM79058
Blocks (Seattle)Q9BZE9
Human Protein AtlasENSG00000169696
HPRD06947
IPIIPI00332071   IPI00065276   IPI00787285   IPI00385430   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZE9
IntAct (EBI)Q9BZE9
FunCoupENSG00000169696
REACTOMEASPSCR1
Protein Interaction Database79058
BioGRIDASPSCR1
InParanoidQ9BZE9
Interologous Interaction database Q9BZE9
IntegromeDBASPSCR1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ASPSCR1
SNP (GeneSNP Utah)ASPSCR1
SNP : HGBaseASPSCR1
Genetic variants : HAPMAPASPSCR1
Cancer Gene: CensusASPSCR1 
Somatic Mutations in Cancer : COSMICASPSCR1 
CONAN: Copy Number AnalysisASPSCR1 
Rearrangement : COSMICASPSCR1 [17q25.3]  -  TFE3 [Xp11.23]
Rearrangement : COSMICTFE3 [Xp11.23]  -  ASPSCR1 [17q25.3]
Translocation Breakpoints in Cancer : TICdbASPSCR1 
Mutations and Diseases : HGMDASPSCR1
OMIM606236    606243   
GENETests606236    606243   
Disease Genetic AssociationASPSCR1
Huge Navigator ASPSCR1 [HugePedia]  ASPSCR1 [HugeCancerGEM]
Genomic VariantsASPSCR1  ASPSCR1 [DGVbeta]
ClinVarASPSCR1
snp3D : Map Gene to Disease79058
General knowledge
Homologs : HomoloGeneASPSCR1
Homology/Alignments : Family Browser (UCSC)ASPSCR1
Phylogenetic Trees/Animal Genes : TreeFamASPSCR1
Chemical/Protein Interactions : CTD79058
Chemical/Pharm GKB GenePA25058
Clinical trialASPSCR1
Cancer Resource (Charite)ENSG00000169696
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytosol  intracellular protein transport  biological_process  internal side of plasma membrane  vesicle membrane  cellular membrane organization  extrinsic to membrane  glucose homeostasis  regulation of glucose import  perinuclear region of cytoplasm  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytosol  intracellular protein transport  biological_process  internal side of plasma membrane  vesicle membrane  cellular membrane organization  extrinsic to membrane  glucose homeostasis  regulation of glucose import  perinuclear region of cytoplasm  
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneASPSCR1
iHOPASPSCR1

Bibliography

The der(17)t(X;17)(p11;q25) of human alveolar soft part sarcoma fuses the TFE3 transcription factor gene to ASPL, a novel gene at 17q25.
Ladanyi M, Lui MY, Antonescu CR, Krause-Boehm A, Meindl A, Argani P, Healey JH, Ueda T, Yoshikawa H, Meloni-Ehrig A, Sorensen PH, Mertens F, Mandahl N, van den Berghe H, Sciot R, Cin PD, Bridge J
Oncogene. 2001 ; 20 (1) : 48-57.
PMID 11244503
 
Primary renal neoplasms with the ASPL-TFE3 gene fusion of alveolar soft part sarcoma: a distinctive tumor entity previously included among renal cell carcinomas of children and adolescents.
Argani P, Antonescu CR, Illei PB, Lui MY, Timmons CF, Newbury R, Reuter VE, Garvin AJ, Perez-Atayde AR, Fletcher JA, Beckwith JB, Bridge JA, Ladanyi M
The American journal of pathology. 2001 ; 159 (1) : 179-192.
PMID 11438465
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2001Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . ASPSCR1 (Alveolar soft part sarcoma critical region 1). Atlas Genet Cytogenet Oncol Haematol. August 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/ASPSCR1ID358.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/37776/1/08-2001-ASPSCR1ID358.pdf   [ Bibliographic record ]

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indexed on : Fri Jun 14 16:53:32 CEST 2013

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