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ASPSCR1 (Alveolar soft part sarcoma critical region 1)

Identity

Other namesASPL (Alveolar soft part sarcoma locus)
HGNC (Hugo) ASPSCR1
Location 17q25
Location_base_pair Starts at 77528715 and ends at 77568571 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description 1872 bp cDNA
Transcription alternative splicing of 47 bp from exon 2 in the 5' untranslated region

Protein

Description 476 amino acids; contains an UBX domain, which may be related to the ubiquitylation pathway
Expression widely expressed in the adult; low expression in fetal tissues

Implicated in

Entity Alveolar soft part sarcoma with ASPSCR1 -TFE3 fusion
Cytogenetics der(X)t(X;17)(p11;q25) is consistently involved; it implicates: 1- the formation of a hybrid gene at the breakpoint, and also, 2- gain in Xp11-pter sequences, and loss of heterozygocity in 11q25-qter, with possible implications
Hybrid/Mutated Gene 5' ASPSCR1-3' TFE3; the reciprocal 5' TFE3 - 3' ASPSCR1 is most often absent. ASPSCR1 is fused in frame to TFE3 exon 3 or 4
Abnormal Protein NH2 term ASPSCR1, fused to the C term of TFE3
Oncogenesis might combine the effect of a fusion protein to that of gene(s) dosage
  
Entity primary renal ASPSCR1-TFE3 tumour
Disease a subset of renal cell carcinoma, which presents with a combination of alveolar soft part sarcoma-like features and epithelial features is found to carry this anomaly
Cytogenetics balanced t(X;17)(p11.2;q25), in contrast with what is found in the alveolar soft part sarcoma (see above)
Hybrid/Mutated Gene 5' ASPSCR1-3' TFE3
Abnormal Protein NH2 term ASPSCR1, fused to the C term of TFE3
  

External links

Nomenclature
HGNC (Hugo)ASPSCR1   13825
Entrez_Gene (NCBI)ASPSCR1  79058  alveolar soft part sarcoma chromosome region, candidate 1
Cards
AtlasASPSCR1ID358
GeneCards (Weizmann)ASPSCR1
Ensembl (Hinxton)ENSG00000169696 [Gene_View]  ASPSCR1 [Vega]
AceView (NCBI)ASPSCR1
Genatlas (Paris)ASPSCR1
euGene (Indiana)79058
SOURCE (Stanford)NM_024083
Genomic and cartography
GoldenPath (UCSC)ASPSCR1  -  17q25   chr17:77528715-77568571 +  17q25   [Description]    (hg18-Mar_2006)
EnsemblASPSCR1 - 17q25 [CytoView]
Mapping of homologs : NCBIASPSCR1 [Mapview]
OMIM606236   606243   
Gene and transcription
Gene : Genbank (Entrez)AF324219 AK057403 AK057851 AK090682 AK126967
Reference sequence (RefSeq transcript) :SRSNM_024083
Reference transcript : EntrezNM_024083
RefSeq genomic : SRSAC_000060 AC_000149 NC_000017 NT_010663 NW_001838459 NW_926918
RefSeq genomic : EntrezAC_000060 AC_000149 NC_000017 NT_010663 NW_001838459 NW_926918
Consensus coding sequences : CCDS NCBIASPSCR1
Cluster EST : UnigeneHs.298351 [ SRS ] Hs.298351 [ NCBI ]
Alternative Splicing : Fast-db (Paris)15722
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9BZE9 (SRS) Q9BZE9 (Expasy) Q9BZE9 (Uniprot)
With graphics : InterProQ9BZE9
Splice isoforms : VarSplice FASTAQ9BZE9(VarSplice FASTA)
Domaine pattern : Prosite (SRS)UBX (PS50033)   
Domain pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (SRS)UBX   
Domains : Interpro (EBI)UBX   
Related proteins : CluSTrQ9BZE9
Domain families : Pfam SRSUBX (PF00789)   
Domain families : Pfam SangerUBX (PF00789)   
Domain families : Pfam NCBIpfam00789   
Domain families : Smart EMBLUBX (SM00166)
Blocks (Seattle)Q9BZE9
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD06947
Protein Interaction databases
DIP (DOE-UCLA)Q9BZE9
IntAct (EBI)Q9BZE9
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIASPSCR1
SNP : GeneSNP UtahASPSCR1
SNP : HGBaseASPSCR1
Genetic variants : HAPMAPASPSCR1
Somatic Mutations in Cancer : COSMICASPSCR1 
Translocation Breakpoints in Cancer : TICdbASPSCR1 
Mutations and Diseases : HGMDASPSCR1
Hereditary diseases : OMIM606236    606243   
Hereditary diseases : GENETests606236    606243   
Diseases : Genetic AssociationASPSCR1
General knowledge
Homologs : HomoloGeneASPSCR1
Homology/Alignments : Family Browser UCSCASPSCR1
Phylogenetic Trees/Animal Genes : TreeFamASPSCR1
Chemical/Protein Interactions : CTD79058
Keywords Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  endomembrane system  membrane  
Keywords Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  endomembrane system  membrane  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesASPSCR1 Related clones (RZPD - Berlin)
Literature
PubMed11 Pubmed reference(s) in Entrez
PubGeneASPSCR1

Bibliography

The der(17)t(X;17)(p11;q25) of human alveolar soft part sarcoma fuses the TFE3 transcription factor gene to ASPL, a novel gene at 17q25.
Ladanyi M, Lui MY, Antonescu CR, Krause-Boehm A, Meindl A, Argani P, Healey JH, Ueda T, Yoshikawa H, Meloni-Ehrig A, Sorensen PH, Mertens F, Mandahl N, van den Berghe H, Sciot R, Cin PD, Bridge J
Oncogene. 2001 ; 20 (1) : 48-57.
PMID 11244503
 
Primary renal neoplasms with the ASPL-TFE3 gene fusion of alveolar soft part sarcoma: a distinctive tumor entity previously included among renal cell carcinomas of children and adolescents.
Argani P, Antonescu CR, Illei PB, Lui MY, Timmons CF, Newbury R, Reuter VE, Garvin AJ, Perez-Atayde AR, Fletcher JA, Beckwith JB, Bridge JA, Ladanyi M
The American journal of pathology. 2001 ; 159 (1) : 179-192.
PMID 11438465
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2001Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . ASPSCR1 (Alveolar soft part sarcoma critical region 1). Atlas Genet Cytogenet Oncol Haematol. August 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/ASPSCR1ID358.html

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indexed on : Sat Jun 27 16:40:57 CEST 2009

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