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CCND1 (B-cell leukemia/lymphoma 1)

Identity

Other namesBCL1 (B-cell leukemia/lymphoma 1)
PRAD1 (parathyroid adenomatosis 1)
HGNC (Hugo) CCND1
Location 11q13
Location_base_pair Starts at 69455873 and ends at 69469241 bp from pter ( according to hg19-Feb_2009)  [Mapping]
 
  BCL1 (11q13) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Description 5 exons
Transcription major transcript: 4.5 kb; coding sequence: CDS 148...1035

Protein

Description the gene encodes the cyclin D1; 295 amino acids; 36 kDa
Expression no normal expression in lymphocytes; cell cycle dependant expression: maximal expression in G1, minimal in S
Localisation mainly nuclear
Function cell cycle control: G1 progression and G1/S transition; forms complexes with CDK4 and 6, and further with RB1; phosphorylation of RB1 by cyclin D1/CDK4 removes the cell cycle arrestin G1/S start point; inhibited by P21, P15, and P16.
Homology with other cyclins

Implicated in

Entity t(11;14)(q13;q32)/B-cell malignancies --> BCL1 - IgH
Disease t(11;14) is mainly found in mantle cell lymphoma; also in: B-prolymphocytic leukaemia, plasma cell leukaemia, splenic lymphoma with villous lymphocytes; rarely in: chronic lymphocytic leukaemia, multiple myeloma
Prognosis according to the disease
Cytogenetics complex karyotypes
Hybrid/Mutated Gene 5' BCL1 translocated on chromosome 14 near JH (junctions genes of IgH) and C in 3'.
Abnormal Protein no fusion protein, but promoter exchange; the immunoglobulin gene enhancer stimulates the expression of BCL1.
Oncogenesis overexpression of BCL1 accelerates the cell transit through the G1 phase.
  
Entity parathyroid adenomatosis
Hybrid/Mutated Gene with PTH, the parathyroid hormone gene, sitting in 11p15
  

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)CCND1   1582
Entrez_Gene (NCBI)CCND1  595  cyclin D1
Cards
AtlasBCL1
GeneCards (Weizmann)CCND1
Ensembl (Hinxton)ENSG00000110092 [Gene_View]  CCND1 [Vega]
AceView (NCBI)CCND1
Genatlas (Paris)CCND1
euGene (Indiana)595
SOURCE (Stanford)NM_053056
Gene Expression (Array Express) ENSG00000110092
Genomic and cartography
GoldenPath (UCSC)CCND1  -  11q13   chr11:69455873-69469241 +  11q13   [Description]    (hg19-Feb_2009)
EnsemblCCND1 - 11q13 [CytoView]
Mapping of homologs : NCBICCND1 [Mapview]
OMIM114500   151400   168461   193300   254500   
Gene and transcription
Gene : Genbank (Entrez)AB075505 AK299044 AK313136 AM393193 AM393430
Reference sequence (RefSeq transcript) :SRSNM_053056
Reference transcript : EntrezNM_053056
RefSeq genomic : SRSAC_000054 AC_000143 NC_000011 NG_007375 NT_167190 NW_001838027 NW_925106
RefSeq genomic : EntrezAC_000054 AC_000143 NC_000011 NG_007375 NT_167190 NW_001838027 NW_925106
Consensus coding sequences : CCDS NCBICCND1
Cluster EST : UnigeneHs.523852 [ SRS ] Hs.523852 [ NCBI ]
Alternative Splicing : Fast-db (Paris)11064
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP24385 (SRS) P24385 (Expasy) P24385 (Uniprot)
With graphics : InterProP24385
Splice isoforms : VarSplice FASTAP24385(VarSplice FASTA)
Domaine pattern : Prosite (SRS)CYCLINS (PS00292)   
Domain pattern : Prosite (Expaxy)CYCLINS (PS00292)   
Domains : Interpro (SRS)CycD    Cyclin    Cyclin-like    Cyclin_A_B_D_E    Cyclin_C    Cyclin_N    Cyclin_related   
Domains : Interpro (EBI)CycD    Cyclin    Cyclin-like    Cyclin_A_B_D_E    Cyclin_C    Cyclin_N    Cyclin_related   
Related proteins : CluSTrP24385
Domain families : Pfam SRSCyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam SangerCyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam NCBIpfam02984    pfam00134   
Domain families : Smart EMBLCYCLIN (SM00385)  
Blocks (Seattle)P24385
Crystal structure of protein : PDB SRS2W96    2W99    2W9F    2W9Z   
Crystal structure of protein : PDBSum2W96    2W99    2W9F    2W9Z   
Crystal structure of protein : IMB2W96    2W99    2W9F    2W9Z   
Crystal structure of protein : PDB RSDB2W96    2W99    2W9F    2W9Z   
Human Protein AtlasENSG00000110092
HPRD01346
Protein Interaction databases
DIP (DOE-UCLA)P24385
IntAct (EBI)P24385
FunCoupENSG00000110092
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICCND1
SNP : GeneSNP UtahCCND1
SNP : HGBaseCCND1
Genetic variants : HAPMAPCCND1
Cancer Gene: CensusCCND1 
Somatic Mutations in Cancer : COSMICCCND1 
Translocation Breakpoints in Cancer : TICdbCCND1 
Mutations and Diseases : HGMDCCND1
Hereditary diseases : OMIM114500    151400    168461    193300    254500   
Hereditary diseases : GENETests114500    151400    168461    193300    254500   
Diseases : Genetic AssociationCCND1
General knowledge
Homologs : HomoloGeneCCND1
Homology/Alignments : Family Browser UCSCCCND1
Phylogenetic Trees/Animal Genes : TreeFamCCND1
Chemical/Protein Interactions : CTD595
Keywords Ontology : AmiGOG1/S transition of mitotic cell cycle  G1/S transition of mitotic cell cycle  cyclin-dependent protein kinase holoenzyme complex  re-entry into mitotic cell cycle  liver development  positive regulation of protein amino acid phosphorylation  protein kinase activity  protein binding  intracellular  nucleus  nucleoplasm  cytoplasm  cytosol  response to DNA damage stimulus  positive regulation of cell proliferation  response to iron ion  response to X-ray  response to organic nitrogen  response to organic cyclic substance  cyclin-dependent protein kinase regulator activity  protein kinase binding  negative regulation of Wnt receptor signaling pathway  negative regulation of epithelial cell differentiation  endoplasmic reticulum unfolded protein response  organ regeneration  G1/S DNA damage checkpoint  response to magnesium ion  protein complex binding  response to vitamin E  Leydig cell differentiation  response to drug  response to estrogen stimulus  fat cell differentiation  response to ethanol  positive regulation of cyclin-dependent protein kinase activity  cell division  response to corticosterone stimulus  response to calcium ion  regulation of cell cycle  Wnt receptor signaling pathway through beta-catenin  response to UV-A  
Keywords Ontology : EGO-EBIG1/S transition of mitotic cell cycle  G1/S transition of mitotic cell cycle  cyclin-dependent protein kinase holoenzyme complex  re-entry into mitotic cell cycle  liver development  positive regulation of protein amino acid phosphorylation  protein kinase activity  protein binding  intracellular  nucleus  nucleoplasm  cytoplasm  cytosol  response to DNA damage stimulus  positive regulation of cell proliferation  response to iron ion  response to X-ray  response to organic nitrogen  response to organic cyclic substance  cyclin-dependent protein kinase regulator activity  protein kinase binding  negative regulation of Wnt receptor signaling pathway  negative regulation of epithelial cell differentiation  endoplasmic reticulum unfolded protein response  organ regeneration  G1/S DNA damage checkpoint  response to magnesium ion  protein complex binding  response to vitamin E  Leydig cell differentiation  response to drug  response to estrogen stimulus  fat cell differentiation  response to ethanol  positive regulation of cyclin-dependent protein kinase activity  cell division  response to corticosterone stimulus  response to calcium ion  regulation of cell cycle  Wnt receptor signaling pathway through beta-catenin  response to UV-A  
Pathways : BIOCARTAInactivation of Gsk3 by AKT causes accumulation of b-catenin in Alveolar Macrophages [Genes]    Cyclins and Cell Cycle Regulation [Genes]    Cell Cycle: G1/S Check Point [Genes]    WNT Signaling Pathway [Genes]    p53 Signaling Pathway [Genes]    BTG family proteins and cell cycle regulation [Genes]    CARM1 and Regulation of the Estrogen Receptor [Genes]    Influence of Ras and Rho proteins on G1 to S Transition [Genes]   
Pathways : KEGGJak-STAT signaling pathwayFocal adhesionCell cycleWnt signaling pathwayColorectal cancer
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesCCND1 Related clones (RZPD - Berlin)
Literature
PubMed499 Pubmed reference(s) in Entrez
PubGeneCCND1

Bibliography

PRAD1, a candidate BCL1 oncogene: mapping and expression in centrocytic lymphoma.
Rosenberg CL, Wong E, Petty EM, Bale AE, Tsujimoto Y, Harris NL, Arnold A
Proceedings of the National Academy of Sciences of the United States of America. 1991 ; 88 (21) : 9638-9642.
PMID 1682919
 
Rearrangement and overexpression of the BCL-1/PRAD-1 gene in intermediate lymphocytic lymphomas and in t(11q13)-bearing leukemias.
Rimokh R, Berger F, Delsol G, Charrin C, Berthˆ©as MF, Ffrench M, Garoscio M, Felman P, Coiffier B, Bryon PA
Blood. 1993 ; 81 (11) : 3063-3067.
PMID 8499640
 
PRAD-1/cyclin D1 gene overexpression in chronic lymphoproliferative disorders: a highly specific marker of mantle cell lymphoma.
Bosch F, Jares P, Campo E, Lopez-Guillermo A, Piris MA, Villamor N, Tassies D, Jaffe ES, Montserrat E, Rozman C
Blood. 1994 ; 84 (8) : 2726-2732.
PMID 7919385
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-1998Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . CCND1 (B-cell leukemia/lymphoma 1). Atlas Genet Cytogenet Oncol Haematol. May 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/BCL1.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 15 14:48:11 CEST 2010

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