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BCL11A (B-cell lymphoma/leukemia 11A)

Identity

HGNC (Hugo) BCL11A
Location 2p13-15
Location_base_pair Starts at 60531806 and ends at 60634137 bp from pter ( according to hg18-Mar_2006)  [Mapping]
 
  BCL11A (2p15) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

 
Description 5 exons, with a CpG island in 5' of the gene
Transcription the major transcript is the longest transcript: (5941 bp); other transcripts of 3.8 kb and 1.5 kb; alternate splices in exon 4

Protein

 
Description 835 amino acids, predicted molecular weight of 91.3 kDa for the longest isoform, called BCL11AXL, with 6 Kruppel C2H2 zinc fingers, a prolin rich domain, and an acidic domain; 773 and 243 amino acids for the BCL11AL and the BCL11AS respectively
Expression expressed in the fetal brain; low level or undetectable expression in most adult tissues, apart from lymph nodes, thymus, and bone marrow.
Function contains DNA binding motifs (Zn fingers)
Homology Evi9 (mouse); human BCL11B (14q32.1)

Implicated in

Entity t(2;14)(p13;q32) in B-cell malignancies
Disease chronic lymphocytic leukemia / immunocytoma aggressive disease; possibly also other t(2;14)(p13;q32) in other B-ell diseases (acute lymphocytic leukemia, myeloma, ...) involve the same genes, but probably not Hodgkin disease cases with 2p amplification
Cytogenetics most often the sole anomaly
Hybrid/Mutated Gene head to head translocation of BCL11A with IGH switch sequences on the der(2)
Oncogenesis BCL11A is overexpressed
  

External links

Nomenclature
HGNC (Hugo)BCL11A   13221
Entrez_Gene (NCBI)BCL11A  53335  B-cell CLL/lymphoma 11A (zinc finger protein)
Cards
AtlasBCL11AID391
GeneCards (Weizmann)BCL11A
Ensembl (Hinxton)ENSG00000119866 [Gene_View]  BCL11A [Vega]
AceView (NCBI)BCL11A
Genatlas (Paris)BCL11A
euGene (Indiana)53335
SOURCE (Stanford)NM_018014 NM_022893 NM_138559
Gene Expression (Array Express) ENSG00000119866
Genomic and cartography
GoldenPath (UCSC)BCL11A  -     chr2:60531806-60634137 -  2p16.1   [Description]    (hg18-Mar_2006)
EnsemblBCL11A - 2p16.1 [CytoView]
Mapping of homologs : NCBIBCL11A [Mapview]
OMIM142335   606557   
Gene and transcription
Gene : Genbank (Entrez)AB058712 AF080216 AJ404611 AJ404612 AJ404613
Reference sequence (RefSeq transcript) :SRSNM_018014 NM_022893 NM_138559
Reference transcript : EntrezNM_018014 NM_022893 NM_138559
RefSeq genomic : SRSAC_000045 AC_000134 NC_000002 NG_011968 NT_022184 NW_001838769 NW_927719
RefSeq genomic : EntrezAC_000045 AC_000134 NC_000002 NG_011968 NT_022184 NW_001838769 NW_927719
Consensus coding sequences : CCDS NCBIBCL11A
Cluster EST : UnigeneHs.370549 [ SRS ] Hs.370549 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5536
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9H165 (SRS) Q9H165 (Expasy) Q9H165 (Uniprot)
With graphics : InterProQ9H165
Splice isoforms : VarSplice FASTAQ9H165(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domain pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9H165
Domain families : Pfam SRSzf-C2H2 (PF00096)   
Domain families : Pfam Sangerzf-C2H2 (PF00096)   
Domain families : Pfam NCBIpfam00096   
Domain families : Smart EMBLZnF_C2H2 (SM00355)  
Blocks (Seattle)Q9H165
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD05949
Protein Interaction databases
DIP (DOE-UCLA)Q9H165
IntAct (EBI)Q9H165
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIBCL11A
SNP : GeneSNP UtahBCL11A
SNP : HGBaseBCL11A
Genetic variants : HAPMAPBCL11A
Cancer Gene: CensusBCL11A 
Somatic Mutations in Cancer : COSMICBCL11A 
Mutations and Diseases : HGMDBCL11A
Hereditary diseases : OMIM142335    606557   
Hereditary diseases : GENETests142335    606557   
Diseases : Genetic AssociationBCL11A
General knowledge
Homologs : HomoloGeneBCL11A
Homology/Alignments : Family Browser UCSCBCL11A
Phylogenetic Trees/Animal Genes : TreeFamBCL11A
Chemical/Protein Interactions : CTD53335
Keywords Ontology : AmiGOnucleic acid binding  transcription corepressor activity  intracellular  nucleus  cytoplasm  zinc ion binding  hemopoiesis  B cell differentiation  T cell differentiation  regulation of transcription  metal ion binding  
Keywords Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  intracellular  nucleus  cytoplasm  zinc ion binding  hemopoiesis  B cell differentiation  T cell differentiation  regulation of transcription  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesBCL11A Related clones (RZPD - Berlin)
Literature
PubMed36 Pubmed reference(s) in Entrez
PubGeneBCL11A

Bibliography

Human EVI9, a homologue of the mouse myeloid leukemia gene, is expressed in the hematopoietic progenitors and down-regulated during myeloid differentiation of HL60 cells.
Saiki Y, Yamazaki Y, Yoshida M, Katoh O, Nakamura T
Genomics. 2000 ; 70 (3) : 387-391.
PMID 11161790
 
The BCL11 gene family: involvement of BCL11A in lymphoid malignancies.
Satterwhite E, Sonoki T, Willis TG, Harder L, Nowak R, Arriola EL, Liu H, Price HP, Gesk S, Steinemann D, Schlegelberger B, Oscier DG, Siebert R, Tucker PW, Dyer MJ
Blood. 2001 ; 98 (12) : 3413-3420.
PMID 11719382
 
Recurrent involvement of the REL and BCL11A loci in classical Hodgkin lymphoma.
Martˆ‚n-Subero JI, Gesk S, Harder L, Sonoki T, Tucker PW, Schlegelberger B, Grote W, Novo FJ, Calasanz MJ, Hansmann ML, Dyer MJ, Siebert R
Blood. 2002 ; 99 (4) : 1474-1477.
PMID 11830502
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2002Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . BCL11A (B-cell lymphoma/leukemia 11A). Atlas Genet Cytogenet Oncol Haematol. April 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/BCL11AID391.html

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indexed on : Sat Feb 27 10:48:18 CET 2010

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