Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BRD4 (bromodomain containing 4)

Identity

Other namesHUNK1
MCAP
Hugo BRD4
Location 19p13

DNA/RNA

Description The gene consists of 20 exons that span approximately 43 kb of genomic DNA in the centromere-to-telomere orientation. The translation initiation codon and stop codon are located to exon 2 and exon 20, respectively.
Transcription Two isoforms of BRD4 have been reported. The "BRD4 long isoform" corresponds to the ordinary full length transcript while the "BRD4 short isoform" corresponds to an alternative splicing variant lacking exons 12-20. The "BRD4 long variant" encodes a 6.0 kb transcript and the "BRD4 short variant" encodes a 4.4 kb transcript.

Protein

Description BRD4 belongs to the BET subgroup of the bromodomain superfamily and contains 2 bromodomains and a conserved ET-domain.
The open reading frame encodes a 1362 amino acid protein with a molecular weight of 200 kDa.
Expression Northen blot analysis has shown an ubiquitous normal expression of both BRD4 isoforms.
Localisation Nuclear.
Function A striking feature of BRD4 is its association with euchromatic regions of mitotic chromosomes. By this association, the protein exerts its function as regulator of cell cycle progression from G2 to M but also in the G1 to S transition. It has also been suggested that the association of BRD4 to chromatin is important for the transmission of a transcriptional memory during cell division.

Implicated in

Entity Carcinoma with t(15;19)(q14;p13) translocation.
Prognosis Carcinoma with t(15;19) translocation is invariably fatal with a rapid clinical course when located to the midline thoracic, head and neck structures. One tumor, displaying the cytogenetic and molecular cytogenetic features of carcinoma with t(15;19) translocation, but located to the iliac bone, has been reported as successfully cured.
Cytogenetics t(15;19)(q14;p13) [reported breakpoints: t(15;19)(q11-15;p13)].
Hybrid/Mutated Gene The t(15;19)(q14;p13) results in a BRD4-NUT chimeric gene where exon 10 of BRD4 is fused to exon 2 of NUT.
Abnormal Protein The BRD4-NUT fusion protein is composed of the N-terminal of BRD4 (amino acids 1-720 out of 1372) and almost the entire protein sequence of NUT (amino acids 6-1127). The N-terminal of BRD4 includes bromodomains 1 and 2 and other, less well characterized functional domains.
Oncogenesis It has been suggested that the oncogenic effect of the NUT-BRD4 fusion is caused not only by the abnormal regulation of NUT by BRD4 promoter elements but also by the consequent ectopic expression of NUT in non-germinal tissues.
  

Breakpoints

Note The vast majority of reported 19p breakpoints were assigned to band 19p13, the exception being the cytogenetic interpretation of a 19q13 breakpoint reported once. The reported breakpoints on chromosome 15 have varied (15q11-q15).

External links

Nomenclature
HugoBRD4
GDBBRD4
Entrez_GeneBRD4  23476  bromodomain containing 4
Cards
AtlasBRD4ID837ch19p13
GeneCardsBRD4
EnsemblBRD4 [Search_View]   ENSG00000141867 [Gene_View]
GenatlasBRD4
GeneLynxBRD4
eGenomeBRD4
euGene23476
Genomic and cartography
GoldenPathBRD4  -  19p13   chr19:15209302-15252262 -  19p13.1   [Description]    (hg18-Mar_2006)
EnsemblBRD4 - 19p13.1 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneBRD4
Gene and transcription
GenbankAF386649 [ ENTREZ ]
GenbankBC000156 [ ENTREZ ]
GenbankBC008354 [ ENTREZ ]
GenbankBC030158 [ ENTREZ ]
GenbankBC035266 [ ENTREZ ]
RefSeqNM_014299 [ SRS ]    NM_014299 [ ENTREZ ]
RefSeqNM_058243 [ SRS ]    NM_058243 [ ENTREZ ]
RefSeqAC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeqNC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeqNT_011295 [ SRS ]    NT_011295 [ ENTREZ ]
RefSeqNW_927195 [ SRS ]    NW_927195 [ ENTREZ ]
AceViewBRD4 AceView - NCBI
UnigeneHs.187763 [ SRS ]    Hs.187763 [ NCBI ]     HS187763 [ spliceNest ]
Fast-db8166 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO60885 [ SRS]    O60885 [ EXPASY ]     O60885 [ INTERPRO ]
PrositePS00633 BROMODOMAIN_1 [ SRS ]    PS00633 BROMODOMAIN_1 [ Expasy ]
PrositePS50014 BROMODOMAIN_2 [ SRS ]    PS50014 BROMODOMAIN_2 [ Expasy ]
InterproIPR001487 Bromodomain [ SRS ]    IPR001487 Bromodomain [ EBI ]
CluSTrO60885
PfamPF00439 Bromodomain [ SRS ]    PF00439 Bromodomain [ Sanger ]    pfam00439 [ NCBI-CDD ]
SmartSM00297 BROMO [EMBL]
BlocksO60885
PDB2I8N [ SRS ]    2I8N [ PdbSum ],   2I8N [ IMB ]   2I8N [ RSDB ]
PDB2NNU [ SRS ]    2NNU [ PdbSum ],   2NNU [ IMB ]   2NNU [ RSDB ]
PDB2OSS [ SRS ]    2OSS [ PdbSum ],   2OSS [ IMB ]   2OSS [ RSDB ]
PDB2OUO [ SRS ]    2OUO [ PdbSum ],   2OUO [ IMB ]   2OUO [ RSDB ]
HPRD10574
Protein Interaction databases
DIPO60885
IntActO60885
Polymorphism : SNP, mutations, diseases
OMIM608749    [ map ]   
GENECLINICS608749
SNPBRD4 [dbSNP-NCBI]  
SNPNM_014299 [SNP-NCI]  
SNPNM_058243 [SNP-NCI]  
SNPBRD4 [GeneSNPs - Utah]  BRD4] [HGBASE - SRS]
HAPMAPBRD4 [HAPMAP]  
COSMICBRD4 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbBRD4 [Translocation breakpoints In Cancer]  
HGMDBRD4
General knowledge
Family BrowserBRD4 [UCSC Family Browser]
SOURCENM_014299
SOURCENM_058243
SMDHs.187763
SAGEHs.187763
GOnucleus [Amigo]  nucleus
PubGeneBRD4
TreeFamBRD4
CTD23476 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeBRD4 Related clones (RZPD - Berlin)
PubMed
PubMed21 Pubmed reference(s) in LocusLink

Bibliography

Intrathoracic carcinoma in an 11-year-old girl showing a translocation t(15;19).
Kees UR, Mulcahy MT, Willoughby ML
The American journal of pediatric hematology/oncology. 1991 ; 13 (4) : 459-464.
PMID 1785673
 
A bromodomain protein, MCAP, associates with mitotic chromosomes and affects G(2)-to-M transition.
Dey A, Ellenberg J, Farina A, Coleman AE, Maruyama T, Sciortino S, Lippincott-Schwartz J, Ozato K
Molecular and cellular biology. 2000 ; 20 (17) : 6537-6549.
PMID 10938129
 
You bet-cha: a novel family of transcriptional regulators.
Florence B, Faller DV
Frontiers in bioscience : a journal and virtual library. 2001 ; 6 : D1008-D1018.
PMID 11487468
 
BRD4 bromodomain gene rearrangement in aggressive carcinoma with translocation t(15;19).
French CA, Miyoshi I, Aster JC, Kubonishi I, Kroll TG, Dal Cin P, Vargas SO, Perez-Atayde AR, Fletcher JA
The American journal of pathology. 2001 ; 159 (6) : 1987-1992.
PMID 11733348
 
A Mammalian bromodomain protein, brd4, interacts with replication factor C and inhibits progression to S phase.
Maruyama T, Farina A, Dey A, Cheong J, Bermudez VP, Tamura T, Sciortino S, Shuman J, Hurwitz J, Ozato K
Molecular and cellular biology. 2002 ; 22 (18) : 6509-6520.
PMID 12192049
 
The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis.
Dey A, Chitsaz F, Abbasi A, Misteli T, Ozato K
Proceedings of the National Academy of Sciences of the United States of America. 2003 ; 100 (15) : 8758-8763.
PMID 12840145
 
BRD4-NUT fusion oncogene: a novel mechanism in aggressive carcinoma.
French CA, Miyoshi I, Kubonishi I, Grier HE, Perez-Atayde AR, Fletcher JA
Cancer research. 2003 ; 63 (2) : 304-307.
PMID 12543779
 
Midline carcinoma of children and young adults with NUT rearrangement.
French CA, Kutok JL, Faquin WC, Toretsky JA, Antonescu CR, Griffin CA, Nose V, Vargas SO, Moschovi M, Tzortzatou-Stathopoulou F, Miyoshi I, Perez-Atayde AR, Aster JC, Fletcher JA
Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2004 ; 22 (20) : 4135-4139.
PMID 15483023
 
Carcinoma with t(15;19) translocation.
Marx A, French CA, Fletcher JA
In..
 
Interaction of the bovine papillomavirus E2 protein with Brd4 tethers the viral DNA to host mitotic chromosomes.
You J, Croyle JL, Nishimura A, Ozato K, Howley PM
Cell. 2004 ; 117 (3) : 349-360.
PMID 15109495
 
Midline carcinoma with t(15;19) and BRD4-NUT fusion oncogene in a 30-year-old female with response to docetaxel and radiotherapy.
Engleson J, Soller M, Panagopoulos I, Dahlˆ©n A, Dictor M, Jerkeman M
BMC cancer. 2006 ; 6 : page 69.
PMID 16542442
 
Successful treatment of a child with t(15;19)-positive tumor.
Mertens F, Wiebe T, Adlercreutz C, Mandahl N, French CA
Pediatric blood & cancer. 2007 ; 49 (7) : 1015-1017.
PMID 16435379
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written02-2007Anna Collin

Citation

This paper should be referenced as such :
Collin A . BRD4 (bromodomain containing 4). Atlas Genet Cytogenet Oncol Haematol. February 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/BRD4ID837ch19p13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:22:19 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.