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BUB1B (BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast))

Identity

Other namesBUBR1
Bub1A
MAD3L
HGNC (Hugo) BUB1B
LocusID (NCBI) 701
Location 15q15
Location_base_pair Starts at 40453210 and ends at 40513337 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
  Figure 1 : Schematic representation of BUB1B demonstrating the relative exon sizes (introns are not drawn to scale)
Description The gene spans 60 kb and is composed of 23 exons

Protein

Note Protein name: BUBR1
 
  Figure 2 : Schematic representation of BUBR1 showing position of mutations, with truncating mutations depicted above the protein and missense mutations below.
Description 1050 amino acids, 120 kDa
Expression Ubiquituously expressed.
Localisation Cytoplasmic in interphase cells. Bound to BUB3 or CENPE, it can be localized to nuclear kinetochores.
Function A central component of the mitotic spindle checkpoint that directly inhibits the anaphase-promoting complex/cyclosome until sister chromatids are correctly attached to the spindle, thus ensuring proper chromosome segregation during cell division. Also binds the motor protein CENPE, an interaction required for regulation of kinetochore-microtubule interactions and checkpoint signalling.
Homology BUBR1 is the mammalian homolog of yeast Mad3, a significant difference being that BUBR1 possesses a kinase domain which is absent in Mad3.

Mutations

Note See figure 2 above
Germinal Biallelic germline mutations found in five Mosaic Variegated Aneuploidy (MVA) cases. Each family carries one missense mutation and one mutation that results in premature protein truncation or an absent transcript.
Somatic Deletion of T at codon 1023 predicted to remove part of the kinase domain.

Implicated in

Entity Mosaic variegated aneuploidy (MVA)
Note is a rare recessive condition characterised by mosaic aneuploidies, predominantly trisomies and monosomies, involving multiple different chromosomes and tissues. Affected individuals typically present with severe intrauterine growth retardation and microcephaly. Eye anomalies, mild dysmorphism, variable developmental delay and a broad spectrum of additional congenital abnormalities and medical conditions may also occur
Prognosis There is early mortality in a significant proportion of cases due to failure to thrive and/or complications of congenital abnormalities, epilepsy, infections or malignancy.
Cytogenetics The proportion of aneuploid cells varies but is usually >25% and is substantially greater than in normal individuals.
Oncogenesis The risk of malignancy in MVA is high, with rhabdomyosarcoma, Wilms tumour and leukaemia reported in several cases. Two of the five cases with BUB1B mutations developed an embryonal rhabdomyosarcoma.
  

External links

Nomenclature
HGNC (Hugo)BUB1B   1149
Entrez_Gene (NCBI)BUB1B  701  budding uninhibited by benzimidazoles 1 homolog beta (yeast)
Cards
AtlasBUB1BID854ch15q15
GeneCards (Weizmann)BUB1B
Ensembl (Hinxton)ENSG00000156970 [Gene_View]  chr15:40453210-40513337 [Contig_View]  BUB1B [Vega]
AceView (NCBI)BUB1B
Genatlas (Paris)BUB1B
euGene (Indiana)701
SOURCE (Stanford)NM_001211
Genomic and cartography
GoldenPath (UCSC)BUB1B  -  15q15   chr15:40453210-40513337 +  15q15   [Description]    (hg19-Feb_2009)
EnsemblBUB1B - 15q15 [CytoView]
Mapping of homologs : NCBIBUB1B [Mapview]
OMIM114500   176430   257300   602860   
Gene and transcription
Genbank (Entrez)AB208782 AF035933 AF046079 AF046918 AF053306
RefSeq transcript (SRS)NM_001211
RefSeq transcript (Entrez)NM_001211
RefSeq genomic (SRS)AC_000147 NC_000015 NG_016338 NT_010194 NW_001838214
RefSeq genomic (Entrez)AC_000147 NC_000015 NG_016338 NT_010194 NW_001838214
Consensus coding sequences : CCDS (NCBI)BUB1B
Cluster EST : UnigeneHs.513645 [ SRS ] Hs.513645 [ NCBI ]
Alternative Splicing : Fast-db (Paris)2064
Alternative Splicing GalleryENSG00000156970
Gene ExpressionBUB1B [ NCBI-GEO ]   BUB1B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60566 (SRS) O60566 (Uniprot)
With graphics : InterProO60566
Splice isoforms : SwissVarO60566(Swissvar)
Domaine pattern : Prosite (SRS)BUB1_N (PS51489)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domaine pattern : Prosite (Expaxy)BUB1_N (PS51489)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (SRS)Kinase-like_dom    Mad3_BUB1_I    Prot_kinase_cat_dom    Ser/Thr_kinase_Bub1   
Domains : Interpro (EBI)Kinase-like_dom    Mad3_BUB1_I    Prot_kinase_cat_dom    Ser/Thr_kinase_Bub1   
Related proteins : CluSTrO60566
Domain families : Pfam (SRS)Mad3_BUB1_I (PF08311)    Pkinase (PF00069)   
Domain families : Pfam (Sanger)Mad3_BUB1_I (PF08311)    Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam08311    pfam00069   
Domain families : Smart (EMBL)Mad3_BUB1_I (SM00777)  
Blocks (Seattle)O60566
PDB (SRS)2WVI    3SI5   
PDB (PDBSum)2WVI    3SI5   
PDB (IMB)2WVI    3SI5   
PDB (RSDB)2WVI    3SI5   
Human Protein AtlasENSG00000156970
HPRD04176
IPIIPI00141933   IPI00922915   IPI00921844   IPI00952610   
Protein Interaction databases
DIP (DOE-UCLA)O60566
IntAct (EBI)O60566
FunCoupENSG00000156970
REACTOMEBUB1B
BioGRIDBUB1B
InParanoidO60566
Interologous Interaction database O60566
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BUB1B
SNP (GeneSNP Utah)BUB1B
SNP : HGBaseBUB1B
Genetic variants : HAPMAPBUB1B
Cancer Gene: CensusBUB1B 
Somatic Mutations in Cancer : COSMICBUB1B 
CONAN: Copy Number AnalysisBUB1B 
Mutations and Diseases : HGMDBUB1B
OMIM114500    176430    257300    602860   
GENETests114500    176430    257300    602860   
Disease Genetic AssociationBUB1B
Huge Navigator BUB1B [HugePedia]  BUB1B [HugeCancerGEM]
Genomic VariantsBUB1B
snp3D : Map Gene to Disease701
General knowledge
Homologs : HomoloGeneBUB1B
Homology/Alignments : Family Browser (UCSC)BUB1B
Phylogenetic Trees/Animal Genes : TreeFamBUB1B
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.1 [ Enzyme-SRS ]   2.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
Chemical/Protein Interactions : CTD701
Chemical/Pharm GKB GenePA82
Clinical trialBUB1B
Cancer Resource (Charite)ENSG00000156970
Ontology : AmiGOcell cycle checkpoint  M phase of mitotic cell cycle  nucleotide binding  mitotic prometaphase  mitotic cell cycle  kinetochore  kinetochore  kinetochore  kinetochore  condensed chromosome kinetochore  condensed chromosome outer kinetochore  protein kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  anaphase-promoting complex  chromosome  cytoplasm  microtubule organizing center  cytosol  cytoskeleton  protein phosphorylation  protein phosphorylation  apoptotic process  cell cycle  spindle organization  mitosis  mitotic metaphase/anaphase transition  mitotic cell cycle checkpoint  mitotic cell cycle spindle assembly checkpoint  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  protein localization to kinetochore  phosphatidylinositol-mediated signaling  perinuclear region of cytoplasm  spindle midzone  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  
Ontology : EGO-EBIcell cycle checkpoint  M phase of mitotic cell cycle  nucleotide binding  mitotic prometaphase  mitotic cell cycle  kinetochore  kinetochore  kinetochore  kinetochore  condensed chromosome kinetochore  condensed chromosome outer kinetochore  protein kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  anaphase-promoting complex  chromosome  cytoplasm  microtubule organizing center  cytosol  cytoskeleton  protein phosphorylation  protein phosphorylation  apoptotic process  cell cycle  spindle organization  mitosis  mitotic metaphase/anaphase transition  mitotic cell cycle checkpoint  mitotic cell cycle spindle assembly checkpoint  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  protein localization to kinetochore  phosphatidylinositol-mediated signaling  perinuclear region of cytoplasm  spindle midzone  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  
Other databases
Probes
Probes : ImagenesBUB1B Related clones (RZPD - Berlin)
Litterature
PubMed104 Pubmed reference(s) in Entrez
PubGeneBUB1B
iHOPBUB1B

Bibliography

Mutations of mitotic checkpoint genes in human cancers.
Cahill DP, Lengauer C, Yu J, Riggins GJ, Willson JK, Markowitz SD, Kinzler KW, Vogelstein B
Nature. 1998 ; 392 (6673) : 300-303.
PMID 9521327
 
Child with mosaic variegated aneuploidy and embryonal rhabdomyosarcoma.
Limwongse C, Schwartz S, Bocian M, Robin NH
American journal of medical genetics. 1999 ; 82 (1) : 20-24.
PMID 9916837
 
Variegated aneuploidy related to premature centromere division (PCD) is expressed in vivo and is a cancer-prone disease.
Plaja A, Vendrell T, Smeets D, Sarret E, Gili T, CatalˆƯ V, Mediano C, Scheres JM
American journal of medical genetics. 2001 ; 98 (3) : 216-223.
PMID 11169558
 
The spindle checkpoint, aneuploidy, and cancer.
Bharadwaj R, Yu H
Oncogene. 2004 ; 23 (11) : 2016-2027.
PMID 15021889
 
Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B.
Hanks S, Coleman K, Reid S, Plaja A, Firth H, Fitzpatrick D, Kidd A, Mˆ©hes K, Nash R, Robin N, Shannon N, Tolmie J, Swansbury J, Irrthum A, Douglas J, Rahman N
Nature genetics. 2004 ; 36 (11) : 1159-1161.
PMID 15475955
 
The human mitotic checkpoint protein BubR1 regulates chromosome-spindle attachments.
Lampson MA, Kapoor TM
Nature cell biology. 2005 ; 7 (1) : 93-98.
PMID 15592459
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written07-2005Sandra Hanks, Nazneen Rahman
Medical Genetics Section of Cancer Genetics, Brookes Lawley Building Institute of Cancer Research, 15 Cotswold Road, Sutton Surrey, SM2 5NG, UK

Citation

This paper should be referenced as such :
Hanks S, Rahman N . BUB1B (BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)). Atlas Genet Cytogenet Oncol Haematol. July 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/BUB1BID854ch15q15.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38238/1/07-2005-BUB1BID854ch15q15.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:07:22 CEST 2012

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