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LRMDA (leucine rich melanocyte differentiation associated)

Identity

Alias_namesC10orf11
chromosome 10 open reading frame 11
Alias_symbol (synonym)CDA017
OCA7
Other alias
HGNC (Hugo) LRMDA
LocusID (NCBI) 83938
Atlas_Id 79179
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 75431646 and ends at 76557376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRMDA   23405
Cards
Entrez_Gene (NCBI)LRMDA  83938  leucine rich melanocyte differentiation associated
AliasesC10orf11; CDA017
GeneCards (Weizmann)LRMDA
Ensembl hg19 (Hinxton)ENSG00000148655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148655 [Gene_View]  ENSG00000148655 [Sequence]  chr10:75431646-76557376 [Contig_View]  LRMDA [Vega]
ICGC DataPortalENSG00000148655
TCGA cBioPortalLRMDA
AceView (NCBI)LRMDA
Genatlas (Paris)LRMDA
WikiGenes83938
SOURCE (Princeton)LRMDA
Genetics Home Reference (NIH)LRMDA
Genomic and cartography
GoldenPath hg38 (UCSC)LRMDA  -     chr10:75431646-76557376 +  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRMDA  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathLRMDA - 10q22.2 [CytoView hg19]  LRMDA - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000148655
Mapping of homologs : NCBILRMDA [Mapview hg19]  LRMDA [Mapview hg38]
OMIM614537   615179   
Gene and transcription
Genbank (Entrez)AF267860 AK125328 BM720401 BX105111 CR933639
RefSeq transcript (Entrez)NM_001305581 NM_032024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRMDA
Cluster EST : UnigeneHs.690504 [ NCBI ]
CGAP (NCI)Hs.690504
Alternative Splicing GalleryENSG00000148655
Gene ExpressionLRMDA [ NCBI-GEO ]   LRMDA [ EBI - ARRAY_EXPRESS ]   LRMDA [ SEEK ]   LRMDA [ MEM ]
Gene Expression Viewer (FireBrowse)LRMDA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83938
GTEX Portal (Tissue expression)LRMDA
Human Protein AtlasENSG00000148655-LRMDA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2I8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2I8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2I8
Splice isoforms : SwissVarQ9H2I8
PhosPhoSitePlusQ9H2I8
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    LRR_dom_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRMDA
DMDM Disease mutations83938
Blocks (Seattle)LRMDA
SuperfamilyQ9H2I8
Human Protein Atlas [tissue]ENSG00000148655-LRMDA [tissue]
Peptide AtlasQ9H2I8
IPIIPI00012461   IPI00639880   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2I8
IntAct (EBI)Q9H2I8
FunCoupENSG00000148655
BioGRIDLRMDA
STRING (EMBL)LRMDA
ZODIACLRMDA
Ontologies - Pathways
QuickGOQ9H2I8
Ontology : AmiGOmelanocyte differentiation  melanocyte differentiation  
Ontology : EGO-EBImelanocyte differentiation  melanocyte differentiation  
NDEx NetworkLRMDA
Atlas of Cancer Signalling NetworkLRMDA
Wikipedia pathwaysLRMDA
Orthology - Evolution
OrthoDB83938
GeneTree (enSembl)ENSG00000148655
Phylogenetic Trees/Animal Genes : TreeFamLRMDA
HOGENOMQ9H2I8
Homologs : HomoloGeneLRMDA
Homology/Alignments : Family Browser (UCSC)LRMDA
Gene fusions - Rearrangements
Fusion : QuiverLRMDA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRMDA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRMDA
dbVarLRMDA
ClinVarLRMDA
1000_GenomesLRMDA 
Exome Variant ServerLRMDA
ExAC (Exome Aggregation Consortium)ENSG00000148655
GNOMAD BrowserENSG00000148655
Varsome BrowserLRMDA
Genetic variants : HAPMAP83938
Genomic Variants (DGV)LRMDA [DGVbeta]
DECIPHERLRMDA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRMDA 
Mutations
ICGC Data PortalLRMDA 
TCGA Data PortalLRMDA 
Broad Tumor PortalLRMDA
OASIS PortalLRMDA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRMDA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRMDA
DgiDB (Drug Gene Interaction Database)LRMDA
DoCM (Curated mutations)LRMDA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRMDA (select a term)
intoGenLRMDA
Cancer3DLRMDA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614537    615179   
Orphanet
DisGeNETLRMDA
MedgenLRMDA
Genetic Testing Registry LRMDA
NextProtQ9H2I8 [Medical]
TSGene83938
GENETestsLRMDA
Target ValidationLRMDA
Huge Navigator LRMDA [HugePedia]
snp3D : Map Gene to Disease83938
BioCentury BCIQLRMDA
ClinGenLRMDA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83938
Chemical/Pharm GKB GenePA134899373
Clinical trialLRMDA
Miscellaneous
canSAR (ICR)LRMDA (select the gene name)
DataMed IndexLRMDA
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRMDA
EVEXLRMDA
GoPubMedLRMDA
iHOPLRMDA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:51:00 CEST 2019

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