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CD97 (CD97 molecule)

Identity

Other namesTM7LN1
Hugo CD97
Location 19p13

DNA/RNA

 
  Genomic organization of CD97 (drawn to scale), boxes represent exons.
Description DNA contains 27.322 kb composed of 20 coding exons. Exons 1-2 encode the 5' untranslated region and the signal peptide, exons 3-7 the five EGF domains, exons 8-13 the extracellular stalk, exons 14-18 the seven-span transmembrane (TM7) domains and exons 19-20 the intracellular part and the 3' untranslated region.
Transcription 3247 bp mRNA transcribed in telomeric to centromeric orientation; 2508 bp open reading frame. Human CD97 exists in three isoforms that result from alternative splicing of exons 5 and 6 and thus contain different numbers of EGF domains in the extracellular part of the molecule. The isoforms are designated as CD97(EGF1,2,5), CD97(EGF1,2,3,5) and CD97(EGF1-5) in human.
Pseudogene No pseudogenes reported.

Protein

 
  Structure of CD97. Three isoforms containing 3, 4, or 5 EGF domains exist. N-glycosylation sites in the EGF domains are indicated.
Description CD97 belongs to the B family of G protein-coupled receptors (GCPRs). Subfamily B2 contains cell surface molecules with long extracellular N-termini (LNB-TM7) known also as adhesion class of heptahelical receptors.
CD97 is the founding member of a small subfamily within the adhesion class called EGF-TM7 family. All EGF-TM7 receptors (CD97, EMR1, EMR2, EMR3, EMR4) consist of extracellular tandemly arranged EGF domains, a stalk, the seven-span transmembrane (TM7) und a short intracellular part. They are expressed as heterodimers of a non-covalently bound alpha- and beta-chain resulting from intracellular autocatalytic cleavage at a conserved GCPR proteolytic site (GPS). The alpha-chain represents the extracellular region with the varying numbers of EGF domains and the main part of the stalk and the beta-chain consists of the stalk residue, the TM7 and intracellular part.
Three CD97 isoforms containing 3, 4 or 5 EGF domains are described. The mature full length proteins contain either 722, 766 or 815 amino acids (aa). After cleavage the (secretory) alpha-chains contain 420, 464, or 513 aa. The beta-chain theoretically contains 305 aa with a molecular weight of 34.3 kDa. However, immunoprecipitation of the beta-chain yielded a molecular weight of approximately 28 kDa. The discrepancy between the theoretical and actual molecular weight of the beta-chain is not yet clarified.
Depending on the cell type and transformation status of the cell, CD97 is completely or partly N-glycosylated or naked. In normal muscle cells CD97 is not or only slightly N-glycosylated. The molecular weight for the respective naked alpha-chain of the various CD97 isoforms are 45.6, 50.5 and 55.8 kDa. In hematopoetic cells CD97 is N-glycosylated at the EGF domains resulting in molecular weights of 74-78, 80-82, and 86-89 kDa for the alpha-chains of the respective isoform. During tumor transformation CD97 may get N-glycosylated. Although the CD97 stalk contains many Ser or Thr residues the molecule seems not to be O-glycosylated.
Expression Broad, not cell-type specific.
  • Hematopoetic system: strong in peripheral blood myeloid cells and activated lymphocytes, moderately in subsets of tissue-derived leukocytes;
  • Strong in smooth muscle cells (except for arterial vascular smooth muscle cells), skeletal muscle cells (stronger in slow-twitch fibers), heart muscle cells;
  • Fat cells;
  • Low in normal intestinal, thyroidal epithelial cells, moderately in duct cells of the pancreas, parotis gland and in bile duct cells of the liver.
  • Localisation Usually at the cell membrane; soluble CD97 (sCD97) representing the CD97 alpha-chain in body fluids;
    Skeletal muscle cells: at the sarcolemm and intracellularly in the sacroendoplasmatic reticulum (SR).
    Function CD97 has the ability to bind cellular and extracellular matrix ligands. The first two EGF domains of CD97 bind CD55 (decay accelerating factor). The fourth EGF domain of CD97 and thus only the longest CD97 isoform interacts with the glycosaminoglycan chondroitin sulfate B. CD97 binds to alpha5beta1 and alphavbeta3 integrins through interaction with the CD97 stalk region.
  • Hematopoetic cells: Functional studies indicate a role of CD97 in leukocyte trafficking. CD97 antibodies block tissue localization of immune cells in vivo leading to impaired protection against bacteria and amelioration of autoimmune pathology.
  • Tumor cells: In vitro CD97 increases single cell random motility and directed migration and invasion of tumor cells in 2D and 3D matrices. CD97 enhances proteolytic activity of matrix metalloproteinases (MMPs) and secretion of chemokines in an isoform-specific manner. CD97 (EGF 1,2,5) overexpression promotes tumor growth in scid mice.
    The alpha-chain of the longest CD97 (EGF1-5) isoform (sCD97) enhances angiogenesis in in vivo tumor models.
  • Muscle, fat, duct cells: function unknown.
  • Homology H. sapiens: CD97
    P. troglodytes: CD97
    B. taurus: CD97
    S. scrofa: CD97
    C. lupus: CD97
    M. musculus: CD97
    R. norvegicus: CD97
    Exists only in mammals.

    Mutations

    Note unknown

    Implicated in

    Note Note for all tumors:
    Antibodies to various epitopes of CD97 vary strongly in their staining pattern and cross-reactivity to other EGF-TM7 molecules. The first group of monoclonal antibodies, which includes BL-Ac/F2, VIM-3b and CLB-CD97/1, binds to the EGF domains of CD97 (CD97EGF antibodies). These antibodies also detect EMR2, another member of the EGF-TM7 family. In most cases, this cross-reactivity will not influence the results obtained for CD97 staining in tumors since EMR2 is strongly restricted to myeloid cells. CD97 antibodies MEM-180 and CLB-CD97/3 bind to the stalk region of CD97 (CD97stalk) and do not bind EMR2.
    CD97EGF epitope accessibility depends on cell type-specific N-glycosylation (see above). CD97EGF antibodies detect only N-glycosylated CD97. During tumor transformation, not only the CD97 protein expression level but also the degree of CD97 N-glycosylation varies. Thus, the selection of the CD97 antibody strongly influences the result in immunohistological studies focused on the correlation between CD97 and histopathological subtypes, diagnosis, progression, or prognosis of tumors.
    CD97 in tumors is strongly regulated at the post-trancriptional level.
      
    Entity Thyroid cancer
    Note In normal thyroid tissue, no or low immunoreactivity of CD97 is found. In differentiated follicular thyroid carcinoma or papillary thyroid carcinoma, CD97 expression is also either lacking or low. Most undifferentiated anaplastic carcinomas reveal high CD97 presentation. CD97 is absent or only weakly present in patients with postoperative T1 tumors but increased greatly with the progression to postoperative T4 tumors. Until now, only antibodies against CD97 EGF domains (CD97EGF antibodies, see above) have been used in studies of thyroid carcinomas.
    Prognosis not determined
    Cytogenetics not determined
    Oncogenesis Overexpression of CD97 might be important for the progression of thyroid cancer.
      
    Entity Colorectal cancer
    Note Normal human colorectal epithelium is slightly CD97-positive. Most colorectal carcinomas express CD97. The strongest staining for CD97 occurs in scattered tumor cells at the invasion front compared to cells located within solid tumor formations of the same tumor. Carcinomas with more strongly CD97-stained scattered tumor cells show a poorer clinical stage as well as increased lymph vessel invasion compared to cases with uniform CD97 staining.
    Prognosis not determined
    Cytogenetics not determined
    Oncogenesis Overexpression of CD97 might be important for invasion and metastasis of colorectal cancer.
      
    Entity Gastric cancer
    Note CD97 is present in normal parietal cells of gastric mucosa. It is stronger expressed by most gastric carcinomas. Half of the tumors show scattered tumor cells at the invasion front with stronger CD97 expression than tumor cells located in solid tumor formations.
    Prognosis not determined
    Cytogenetics not determined
      
    Entity Leiomyosarcoma
    Note Normal smooth muscle cells are CD97-positive. In this cell type CD97 is not N-glycosylated. Thus, monoclonal antibodies that detect an N-glycosylation dependent epitop of CD97 do not react with normal smooth muscle cells (CD97EGF antibodies). During transformation CD97 get partly N-glyocosylated in most uterine leiomyoma and or completely N-glyocosylated in nearly 25% of the leiomyosarcomas. These tumors are now positive for CD97EGF antibodies. However, one third of leiomyosarcomas are completely devoid of CD97.
    Prognosis not determined
    Cytogenetics not determined
      

    External links

    Nomenclature
    HugoCD97
    GDBCD97
    Entrez_GeneCD97  976  CD97 molecule
    Cards
    AtlasCD97ID996ch19p13
    GeneCardsCD97
    EnsemblCD97 [Search_View]   ENSG00000123146 [Gene_View]
    GenatlasCD97
    GeneLynxCD97
    eGenomeCD97
    euGene976
    Genomic and cartography
    GoldenPathCD97  -  19p13   chr19:14353213-14380533 +  19p13   [Description]    (hg18-Mar_2006)
    EnsemblCD97 - 19p13 [CytoView]
    NCBIMapview
    OMIMDisease map [OMIM]
    HomoloGeneCD97
    Gene and transcription
    GenbankAK097264 [ ENTREZ ]
    GenbankAK225655 [ ENTREZ ]
    GenbankAK225677 [ ENTREZ ]
    GenbankAK292159 [ ENTREZ ]
    GenbankAU117846 [ ENTREZ ]
    RefSeqNM_001025160 [ SRS ]    NM_001025160 [ ENTREZ ]
    RefSeqNM_001784 [ SRS ]    NM_001784 [ ENTREZ ]
    RefSeqNM_078481 [ SRS ]    NM_078481 [ ENTREZ ]
    RefSeqAC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
    RefSeqNC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
    RefSeqNT_011295 [ SRS ]    NT_011295 [ ENTREZ ]
    RefSeqNW_927195 [ SRS ]    NW_927195 [ ENTREZ ]
    AceViewCD97 AceView - NCBI
    UnigeneHs.466039 [ SRS ]    Hs.466039 [ NCBI ]     HS466039 [ spliceNest ]
    Fast-db7720 (alternative variants)
    Protein : pattern, domain, 3D structure
    SwissProtP48960 [ SRS]    P48960 [ EXPASY ]     P48960 [ INTERPRO ]
    PrositePS00010 ASX_HYDROXYL [ SRS ]    PS00010 ASX_HYDROXYL [ Expasy ]
    PrositePS50026 EGF_3 [ SRS ]    PS50026 EGF_3 [ Expasy ]
    PrositePS01187 EGF_CA [ SRS ]    PS01187 EGF_CA [ Expasy ]
    PrositePS00650 G_PROTEIN_RECEP_F2_2 [ SRS ]    PS00650 G_PROTEIN_RECEP_F2_2 [ Expasy ]
    PrositePS50261 G_PROTEIN_RECEP_F2_4 [ SRS ]    PS50261 G_PROTEIN_RECEP_F2_4 [ Expasy ]
    PrositePS50221 GPS [ SRS ]    PS50221 GPS [ Expasy ]
    InterproIPR000152 Asx_hydroxyl_S [ SRS ]    IPR000152 Asx_hydroxyl_S [ EBI ]
    InterproIPR000742 EGF_3 [ SRS ]    IPR000742 EGF_3 [ EBI ]
    InterproIPR001881 EGF_Ca_bd [ SRS ]    IPR001881 EGF_Ca_bd [ EBI ]
    InterproIPR013091 EGF_Ca_bd_2 [ SRS ]    IPR013091 EGF_Ca_bd_2 [ EBI ]
    InterproIPR003056 GPCR_2_CD97 [ SRS ]    IPR003056 GPCR_2_CD97 [ EBI ]
    InterproIPR000832 GPCR_2_secretin-like [ SRS ]    IPR000832 GPCR_2_secretin-like [ EBI ]
    InterproIPR000203 PKD_cys_rich [ SRS ]    IPR000203 PKD_cys_rich [ EBI ]
    CluSTrP48960
    PfamPF00002 7tm_2 [ SRS ]    PF00002 7tm_2 [ Sanger ]    pfam00002 [ NCBI-CDD ]
    PfamPF07645 EGF_CA [ SRS ]    PF07645 EGF_CA [ Sanger ]    pfam07645 [ NCBI-CDD ]
    PfamPF01825 GPS [ SRS ]    PF01825 GPS [ Sanger ]    pfam01825 [ NCBI-CDD ]
    SmartSM00179 EGF_CA [EMBL]
    SmartSM00303 GPS [EMBL]
    BlocksP48960
    HPRD03130
    Protein Interaction databases
    DIPP48960
    IntActP48960
    Polymorphism : SNP, mutations, diseases
    OMIM601211    [ map ]   
    GENECLINICS601211
    SNPCD97 [dbSNP-NCBI]  
    SNPNM_001025160 [SNP-NCI]  
    SNPNM_001784 [SNP-NCI]  
    SNPNM_078481 [SNP-NCI]  
    SNPCD97 [GeneSNPs - Utah]  CD97] [HGBASE - SRS]
    HAPMAPCD97 [HAPMAP]  
    HGMDCD97
    General knowledge
    Family BrowserCD97 [UCSC Family Browser]
    SOURCENM_001025160
    SOURCENM_001784
    SOURCENM_078481
    SMDHs.466039
    SAGEHs.466039
    GOG-protein coupled receptor activity [Amigo]  G-protein coupled receptor activity
    GOcalcium ion binding [Amigo]  calcium ion binding
    GOprotein binding [Amigo]  protein binding
    GOprotein binding [Amigo]  protein binding
    GOextracellular region [Amigo]  extracellular region
    GOplasma membrane [Amigo]  plasma membrane
    GOintegral to plasma membrane [Amigo]  integral to plasma membrane
    GOcell motility [Amigo]  cell motility
    GOinflammatory response [Amigo]  inflammatory response
    GOimmune response [Amigo]  immune response
    GOcell adhesion [Amigo]  cell adhesion
    GOneuropeptide signaling pathway [Amigo]  neuropeptide signaling pathway
    GOcell-cell signaling [Amigo]  cell-cell signaling
    PubGeneCD97
    TreeFamCD97
    CTD976 [Comparative ToxicoGenomics Database]
    Other databases
    Other databaseHREF="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=63891">Family 2 or B of the G-protein-coupled receptors (GCPRs)
    Probes
    ProbeCD97 Related clones (RZPD - Berlin)
    PubMed
    PubMed26 Pubmed reference(s) in LocusLink

    Bibliography

    CD97: a dedifferentiation marker in human thyroid carcinomas.
    Aust G, Eichler W, Laue S, Lehmann I, Heldin NE, Lotz O, Scherbaum WA, Dralle H, Hoang-Vu C
    Cancer research. 1997 ; 57 (9) : 1798-1806.
    PMID 9135025
     
    CD97, but not its closely related EGF-TM7 family member EMR2, is expressed on gastric, pancreatic, and esophageal carcinomas.
    Aust G, Steinert M, Schˆºtz A, Boltze C, Wahlbuhl M, Hamann J, Wobus M
    American journal of clinical pathology. 2002 ; 118 (5) : 699-707.
    PMID 12428789
     
    Expression and regulation of CD97 in colorectal carcinoma cell lines and tumor tissues.
    Steinert M, Wobus M, Boltze C, Schˆºtz A, Wahlbuhl M, Hamann J, Aust G
    The American journal of pathology. 2002 ; 161 (5) : 1657-1667.
    PMID 12414513
     
    CD97, an adhesion receptor on inflammatory cells, stimulates angiogenesis through binding integrin counterreceptors on endothelial cells.
    Wang T, Ward Y, Tian L, Lake R, Guedez L, Stetler-Stevenson WG, Kelly K
    Blood. 2005 ; 105 (7) : 2836-2844.
    PMID 15576472
     
    Comparative study of gill neuroepithelial cells and their innervation in teleosts and Xenopus tadpoles.
    Saltys HA, Jonz MG, Nurse CA
    Cell and tissue research. 2006 ; 323 (1) : 1-10.
    PMID 16163489
     
    Individual cell-based models of tumor-environment interactions: Multiple effects of CD97 on tumor invasion.
    Galle J, Sittig D, Hanisch I, Wobus M, Wandel E, Loeffler M, Aust G
    The American journal of pathology. 2006 ; 169 (5) : 1802-1811.
    PMID 17071601
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written10-2007Gabriela Aust
    University of Leipzig, Faculty of Medicine, Research Laboratories, Center of Surgery, Liebigstr. 20, Leipzig, D-04103, Germany

    Citation

    This paper should be referenced as such :
    Aust G . CD97 (CD97 molecule). Atlas Genet Cytogenet Oncol Haematol. October 2007 .
    URL : http://AtlasGeneticsOncology.org/Genes/CD97ID996ch19p13.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed Jul 2 08:22:33 2008


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