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CLDN10 (claudin 10)

Identity

Other namesCPETRL3
OSP-L
HGNC (Hugo) CLDN10
LocusID (NCBI) 9071
Location 13q32.1
Location_base_pair Starts at 96085853 and ends at 96232010 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
  The three different isoforms of claudin 10; claudin 10 (a), claudin 10 (b) and claudin 10 (a_i1).
Transcription Claudin 10 has 3 different transcripts.
NP_878268.1 [NCBI Entrez] claudin-10 isoform a: This variant (a) is the longest transcript and encodes claudin-10 isoform a. Its composition is as follows:
- Exons: 5;
- Transcript length: 2549 bps;
- Translation length: 226 residues.

NP_008915.1 [NCBI Entrez] claudin-10 isoform b precursor: This variant (b) is different from the isoform (a) above in the 5' UTR and 5' coding region. It uses an alternate promoter, compared to variant a. The resulting isoform (b) has a longer and more distinct N-terminus. Its composition is as follows:
- Exons: 5;
- Transcript length: 949 bps;
- Translation length: 228 residues.

NP_001153572.1 [NCBI Entrez] claudin-10 isoform a_i1: This variant (a_v1) uses an alternate in-frame splice site in the 5' coding region, compared to claudin 10 isoform a. The resulting isoform (a_i1) lacks an internal segment near the N-terminus, compared to isoform a. Its composition is as follows:
- Exons: 2;
- Transcript length: 701 bps;
- Translation length: 73 residues AK055855, BG697724, DA636757, DB544708 (source sequences NCBI).

Protein

Note Claudin 10 plays a major role as a component of tight junctions. CLDN10 encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands function as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets. They are also critical in maintaining cell polarity and mediating signals. The expression level of this gene is associated with recurrence of primary hepatocellular carcinoma. Six alternatively spliced transcripts encoding different isoforms of CLDN10 have been reported, but not all of them have been recorded.
 
  The four transmembrane, two extracellular, 3 helical and two cytoplasmic domains of claudin protein.
Description 228 amino acids. Modified amino acid residue at position 94 is a phosphoserine. Human and mouse isoforms of CLDN10 have been cloned. Claudin-10 shares between 20 and 45% sequence similarity between other claudin family members at the amino acid level, displaying highest sequence similarity to claudin-15.
CLAUDIN10 is a 4-element fingerprint that provides a signature for claudin-10 proteins. The fingerprint was derived from an initial alignment of 2 sequences: the motifs were drawn from conserved regions spanning virtually the full alignment length, focusing on those sections thatcharacterize claudin-10 and distinguish it from other family members - motif 1 lies in the first TM domain; motif 2 resides within in the second TM domain; motifs 3 spans part of the fourth TM domain and part of the C-terminal region; and motif 4 resides within the cytoplasmic C-terminus.
 
  Sequence similarity between the various claudins showing that claudin 10 has the highest sequence similarity to claudin 15.
Expression At the cell membrane in 85 organs and 13 developmental stages (Bgee)[P78369].
Localisation Cell membrane.
Function From the KEGG pathway.
Claudin 10 as an integral part of tight junction composition plays an important role in Leukocyte migration. They are also important components of cell adhesion molecules and serve as a receptor for the HCV virus via their extracellular loop.
hsa04514: Cell adhesion molecules (CAMs)
hsa04530: Tight junction
hsa04670: Leukocyte transendothelial migration
hsa05160: Hepatitis C
Homology The CLDN10 gene is conserved in chimpanzee, dog, cow, mouse, rat, chicken, and zebrafish.

Mutations

Note Total disease mutations: 0; total SNPs: 5.

Implicated in

Entity Hepatocellular carcinoma (HCC)
Prognosis Claudin 10 is highly expressed in patients suffering from HCC and is an independent prognostic survival factor after surgery. It is closely related to microvessel density and angiogenesis.
  
Entity Ovarian cancer
Disease Ovarian cancer in a chicken model to be used as a basis to study the relevance of CLDN10 expression in ovarian cancer in humans.
Prognosis Claudin 10 mRNA expression was significantly upregulated in cancerous chicken ovaries with respect to normal ovaries implicating it in the etiology of this disease.
  

External links

Nomenclature
HGNC (Hugo)CLDN10   2033
Entrez_Gene (NCBI)CLDN10  9071  claudin 10
Cards
AtlasCLDN10ID45827ch13q32
GeneCards (Weizmann)CLDN10
Ensembl (Hinxton)ENSG00000134873 [Gene_View]  chr13:96085853-96232010 [Contig_View]  CLDN10 [Vega]
AceView (NCBI)CLDN10
Genatlas (Paris)CLDN10
SOURCE (Stanford)NM_001160100 NM_006984 NM_182848
Genomic and cartography
GoldenPath (UCSC)CLDN10  -  13q32.1   chr13:96085853-96232010 +  13q31-q34   [Description]    (hg19-Feb_2009)
EnsemblCLDN10 - 13q31-q34 [CytoView]
Mapping of homologs : NCBICLDN10 [Mapview]
Gene and transcription
Genbank (Entrez)AF339794 AK055855 AK315737 BC010920 BG697724
RefSeq transcript (SRS)NM_001160100 NM_006984 NM_182848
RefSeq transcript (Entrez)NM_001160100 NM_006984 NM_182848
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NT_009952 NW_001838084 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_009952 NW_001838084 NW_004078077
Consensus coding sequences : CCDS (NCBI)CLDN10
Cluster EST : UnigeneHs.534377 [ SRS ] Hs.534377 [ NCBI ]
CGAP (NCI)Hs.534377
Alternative Splicing GalleryENSG00000134873
Gene ExpressionCLDN10 [ NCBI-GEO ]   CLDN10 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78369 (SRS) P78369 (Uniprot)
NextProtP78369
With graphics : InterProP78369
Splice isoforms : SwissVarP78369(Swissvar)
Domaine pattern : Prosite (SRS)CLAUDIN (PS01346)   
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (SRS)Claudin    Claudin10    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domains : Interpro (EBI)Claudin    Claudin10    Claudin_CS    PMP22/EMP/MP20/Claudin   
Related proteins : CluSTrP78369
Domain families : Pfam (SRS)PMP22_Claudin (PF00822)   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
DMDM9071
Blocks (Seattle)P78369
Human Protein AtlasENSG00000134873
HPRD13063
IPIIPI00019231   IPI00641946   IPI00043502   
Protein Interaction databases
DIP (DOE-UCLA)P78369
IntAct (EBI)P78369
FunCoupENSG00000134873
REACTOMECLDN10
Protein Interaction Database9071
BioGRIDCLDN10
InParanoidP78369
Interologous Interaction database P78369
IntegromeDBCLDN10
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLDN10
SNP (GeneSNP Utah)CLDN10
SNP : HGBaseCLDN10
Genetic variants : HAPMAPCLDN10
Somatic Mutations in Cancer : COSMICCLDN10 
CONAN: Copy Number AnalysisCLDN10 
Mutations and Diseases : HGMDCLDN10
OMIM
GENETests
Disease Genetic AssociationCLDN10
Huge Navigator CLDN10 [HugePedia]  CLDN10 [HugeCancerGEM]
Genomic VariantsCLDN10  CLDN10 [DGVbeta]
ClinVarCLDN10
snp3D : Map Gene to Disease9071
General knowledge
Homologs : HomoloGeneCLDN10
Homology/Alignments : Family Browser (UCSC)CLDN10
Phylogenetic Trees/Animal Genes : TreeFamCLDN10
Chemical/Protein Interactions : CTD9071
Chemical/Pharm GKB GenePA26558
Clinical trialCLDN10
Cancer Resource (Charite)ENSG00000134873
Ontology : AmiGOstructural molecule activity  plasma membrane  tight junction  cell adhesion  integral to membrane  calcium-independent cell-cell adhesion  identical protein binding  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  tight junction  cell adhesion  integral to membrane  calcium-independent cell-cell adhesion  identical protein binding  
Pathways : KEGGLeukocyte transendothelial migrationCell adhesion molecules (CAMs)Tight junction
Other databases
Other databaseThe Protein Model Portal
Other databaseModBase
Other databasestring
Other databasephosphoSitePlus
Other databaseStructuralBiologyKnowledgebase
Other databaseThe Human Protein Atlas
Other databaseneXtProt CANCERGENE
Other databaseeggNOG
Other databasePhylogenetic tree of the HBG716859 gene family of HOGENOM database
Other databasePhylogenetic tree of the HBG000643 gene family of HOVERGEN database
Other databaseOMA browser
Other databaseOrthoDB
Other databasephylomeDB
Other databaseBgee
Other databaseCleanEx
Other databaseGenevestigator
Other databaseGermonline
Other databaseKegg
Other databasePanther Classification System
Other databasePfam (Sanger)
Other databasePRINTS View PR01077
Other databasePRINTS View PR01383
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
PubGeneCLDN10
iHOPCLDN10

Bibliography

Claudin-10 expression level is associated with recurrence of primary hepatocellular carcinoma.
Cheung ST, Leung KL, Ip YC, Chen X, Fong DY, Ng IO, Fan ST, So S.
Clin Cancer Res. 2005 Jan 15;11(2 Pt 1):551-6.
PMID 15701840
 
Claudin-10 exists in six alternatively spliced isoforms that exhibit distinct localization and function.
Gunzel D, Stuiver M, Kausalya PJ, Haisch L, Krug SM, Rosenthal R, Meij IC, Hunziker W, Fromm M, Muller D.
J Cell Sci. 2009 May 15;122(Pt 10):1507-17. Epub 2009 Apr 21.
PMID 19383724
 
The claudins.
Lal-Nag M, Morin PJ.
Genome Biol. 2009;10(8):235. Epub 2009 Aug 26. (REVIEW)
PMID 19706201
 
Claudin 10 is a glandular epithelial marker in the chicken model as human epithelial ovarian cancer.
Seo HW, Rengaraj D, Choi JW, Ahn SE, Song YS, Song G, Han JY.
Int J Gynecol Cancer. 2010 Dec;20(9):1465-73.
PMID 21370593
 
Expression of claudin 10 protein in hepatocellular carcinoma: impact on survival.
Huang GW, Ding X, Chen SL, Zeng L.
J Cancer Res Clin Oncol. 2011 Aug;137(8):1213-8. Epub 2011 Jun 7.
PMID 21647678
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written12-2011Madhu Lal-Nag
Laboratory of Cellular and Molecular Biology, National Institute on Aging, National Institutes of Health Biomedical Research Center, Baltimore, MD 21224, USA

Citation

This paper should be referenced as such :
Lal-Nag M . CLDN10 (claudin 10). Atlas Genet Cytogenet Oncol Haematol. December 2011 .
URL : http://AtlasGeneticsOncology.org/Genes/CLDN10ID45827ch13q32.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/handle/2042/47323/12-2011-CLDN10ID45827ch13q32.pdf   [ Bibliographic record ]

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 16:41:42 CEST 2013

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