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CLDN4 (Claudin-4)

Identity

Other namesCPETR,
CPETR1
WBSCR8 (Williams-Beuren syndrome chromosome region 8 protein)
hCPE-R, CPE-R (Clostridium perfringens enterotoxin receptor)
HGNC (Hugo) CLDN4
LocusID (NCBI) 1364
Location 7q11.23
Location_base_pair Starts at 73245193 and ends at 73247015 bp from pter ( according to hg19-Feb_2009)  [Mapping]
 
  Probe(s) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics

DNA/RNA

Description intronless; one exon spanning 1.68 kb
Transcription one transcript of 1.68kb with 630 bp of coding sequence

Protein

Description The CLDN4 protein contains 209 amino acids and has a molecular weight of 22.1 kDa with four putative transmembrane segments. It directly interacts with TJP1/ZO-1, TJP2/ZO-2 and TJP3/ZO-3.
Expression Claudin-4 is expressed in many fetal and adult tissues, predominantly in lung, intestine and kidney. Overexpressed in pancreatic, breast, ovarian, and prostate cancer.
Localisation Integral membrane protein. Tight junction component.
Function CLDN4 plays a major role in tight junction-specific obliteration of the intercellular space.
Homology Belongs to the claudin family.

Implicated in

Entity Williams-Beuren syndrom
Disease Williams-Beuren syndrom (WBS) includes supravalvular aortic stenosis (SVAS), multiple peripheral pulmonary arterial stenoses, elfin face, mental and statural deficiency, characteristic dental malformation, and infantile hypercalcemia. It is associated with an autosomal dominant contiguous gene deletion involving genes from chromosome band 7q11.23, including CLDN4, elastin and LIM-kinase1. Haploinsufficiency for CLDN4 may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the context of this disease.
  
Entity Gastric cancer
Oncogenesis Downregulated in gastric cancer. Absence of CLDN4 may play a role in the disruption of cell-to-cell adhesion in diffuse type gastric cancer and in a loss of differentiation.
  
Entity pancreatic cancer
Disease .
Oncogenesis Overexpressed in pancreatic cancer. Overexpression is predominantly observed in well-differentiated tumors with decreased metastatic potential
  
Entity Breast cancer
Oncogenesis Overexpressed in breast cancer and Paget's disease. Significance unclear.
  
Entity Ovarian cancer
Oncogenesis CLDN4 is upregulated in ovarian tumors and cell lines and may represent a novel marker for this disease.
  
Entity Squamous cell carcinoma and Bowen's disease
Oncogenesis Expression of claudin-4 is associated with keratinization in SCC and BD.
  
Entity Prostate cancer
Oncogenesis Overexpressed in prostate cancer ephitelium. Significance unclear
  

External links

Nomenclature
HGNC (Hugo)CLDN4   2046
Entrez_Gene (NCBI)CLDN4  1364  claudin 4
Cards
AtlasCLDN4ID42975ch7q11
GeneCards (Weizmann)CLDN4
Ensembl (Hinxton)ENSG00000189143 [Gene_View]  chr7:73245193-73247015 [Contig_View]  CLDN4 [Vega]
AceView (NCBI)CLDN4
Genatlas (Paris)CLDN4
euGene (Indiana)1364
SOURCE (Stanford)NM_001305
Genomic and cartography
GoldenPath (UCSC)CLDN4  -  7q11.23   chr7:73245193-73247015 +  7q11.23   [Description]    (hg19-Feb_2009)
EnsemblCLDN4 - 7q11.23 [CytoView]
Mapping of homologs : NCBICLDN4 [Mapview]
OMIM602909   
Gene and transcription
Genbank (Entrez)AB000712 AK026651 AK124076 AK126315 AK126462
RefSeq transcript (SRS)NM_001305
RefSeq transcript (Entrez)NM_001305
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NG_012868 NG_023289 NT_007933 NT_079593 NW_001839039
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NG_012868 NG_023289 NT_007933 NT_079593 NW_001839039
Consensus coding sequences : CCDS (NCBI)CLDN4
Cluster EST : UnigeneHs.729359 [ SRS ] Hs.729359 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6426
Alternative Splicing GalleryENSG00000189143
Gene ExpressionCLDN4 [ NCBI-GEO ]   CLDN4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14493 (SRS) O14493 (Uniprot)
With graphics : InterProO14493
Splice isoforms : SwissVarO14493(Swissvar)
Domaine pattern : Prosite (SRS)CLAUDIN (PS01346)   
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (SRS)Claudin    Claudin4    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domains : Interpro (EBI)Claudin    Claudin4    Claudin_CS    PMP22/EMP/MP20/Claudin   
Related proteins : CluSTrO14493
Domain families : Pfam (SRS)PMP22_Claudin (PF00822)   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Blocks (Seattle)O14493
Human Protein AtlasENSG00000189143
HPRD04218
IPIIPI00021944   IPI01010878   
Protein Interaction databases
DIP (DOE-UCLA)O14493
IntAct (EBI)O14493
FunCoupENSG00000189143
REACTOMECLDN4
BioGRIDCLDN4
InParanoidO14493
Interologous Interaction database O14493
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLDN4
SNP (GeneSNP Utah)CLDN4
SNP : HGBaseCLDN4
Genetic variants : HAPMAPCLDN4
Somatic Mutations in Cancer : COSMICCLDN4 
CONAN: Copy Number AnalysisCLDN4 
Mutations and Diseases : HGMDCLDN4
OMIM602909   
GENETests602909   
Disease Genetic AssociationCLDN4
Huge Navigator CLDN4 [HugePedia]  CLDN4 [HugeCancerGEM]
Genomic VariantsCLDN4
snp3D : Map Gene to Disease1364
General knowledge
Homologs : HomoloGeneCLDN4
Homology/Alignments : Family Browser (UCSC)CLDN4
Phylogenetic Trees/Animal Genes : TreeFamCLDN4
Chemical/Protein Interactions : CTD1364
Chemical/Pharm GKB GenePA26572
Clinical trialCLDN4
Cancer Resource (Charite)ENSG00000189143
Ontology : AmiGOtransmembrane signaling receptor activity  structural molecule activity  plasma membrane  integral to plasma membrane  tight junction  female pregnancy  basal plasma membrane  apical plasma membrane  apicolateral plasma membrane  lateral plasma membrane  calcium-independent cell-cell adhesion  cell junction  response to progesterone stimulus  identical protein binding  
Ontology : EGO-EBItransmembrane signaling receptor activity  structural molecule activity  plasma membrane  integral to plasma membrane  tight junction  female pregnancy  basal plasma membrane  apical plasma membrane  apicolateral plasma membrane  lateral plasma membrane  calcium-independent cell-cell adhesion  cell junction  response to progesterone stimulus  identical protein binding  
Pathways : KEGGTight junctionLeukocyte transendothelial migrationCell adhesion molecules (CAMs)
Other databases
Probes
Probes : ImagenesCLDN4 Related clones (RZPD - Berlin)
Litterature
PubMed82 Pubmed reference(s) in Entrez
PubGeneCLDN4
iHOPCLDN4

Bibliography

Genes for the CPE receptor (CPETR1) and the human homolog of RVP1 (CPETR2) are localized within the Williams-Beuren syndrome deletion.
Paperna T, Peoples R, Wang YK, Kaplan P, Francke U
Genomics. 1998 ; 54 (3) : 453-459.
PMID 9878248
 
Claudin multigene family encoding four-transmembrane domain protein components of tight junction strands.
Morita K, Furuse M, Fujimoto K, Tsukita S
Proceedings of the National Academy of Sciences of the United States of America. 1999 ; 96 (2) : 511-516.
PMID 9892664
 
Expression of Clostridium perfringens enterotoxin receptors claudin-3 and claudin-4 in prostate cancer epithelium.
Long H, Crean CD, Lee WH, Cummings OW, Gabig TG
Cancer research. 2001 ; 61 (21) : 7878-7881.
PMID 11691807
 
Claudin-4 expression decreases invasiveness and metastatic potential of pancreatic cancer.
Michl P, Barth C, Buchholz M, Lerch MM, Rolke M, Holzmann KH, Menke A, Fensterer H, Giehl K, Lˆhr M, Leder G, Iwamura T, Adler G, Gress TM
Cancer research. 2003 ; 63 (19) : 6265-6271.
PMID 14559813
 
Claudin 4 protein expression in primary and metastatic pancreatic cancer: support for use as a therapeutic target.
Nichols LS, Ashfaq R, Iacobuzio-Donahue CA
American journal of clinical pathology. 2004 ; 121 (2) : 226-230.
PMID 14983936
 
Tight junction-associated proteins (occludin, ZO-1, claudin-1, claudin-4) in squamous cell carcinoma and Bowen's disease.
Morita K, Tsukita S, Miyachi Y
The British journal of dermatology. 2004 ; 151 (2) : 328-334.
PMID 15327539
 
Claudin 4 protein expression in primary and metastatic pancreatic cancer: support for use as a therapeutic target.
Nichols LS, Ashfaq R, Iacobuzio-Donahue CA
American journal of clinical pathology. 2004 ; 121 (2) : 226-230.
PMID 14983936
 
Claudins 2, 3, 4, and 5 in Paget's disease and breast carcinoma.
Soini Y
Human pathology. 2004 ; 35 (12) : 1531-1536.
PMID 15619213
 
Loss of the tight junction protein claudin 4 correlates with histological growth-pattern and differentiation in advanced gastric adenocarcinoma.
Lee SK, Moon J, Park SW, Song SY, Chung JB, Kang JK
Oncology reports. 2005 ; 13 (2) : 193-199.
PMID 15643498
 
Claudin-1, -3 and -4 proteins and mRNA expression in benign and malignant breast lesions: a research study.
Tokˆ©s AM, Kulka J, Paku S, Szik A, Pˆ°ska C, Novˆ°k PK, Szilˆ°k L, Kiss A, Bˆgi K, Schaff Z
Breast cancer research : BCR. 2005 ; 7 (2) : R296-R305.
PMID 15743508
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written10-2005Stefanie Ripka, Thomas M Gress
Abteilung Innere Medizin I, Universitätsklinikum Ulm, Robert Koch Str.8, 89081 Ulm, Germany

Citation

This paper should be referenced as such :
Ripka S, Gress TM . CLDN4 (Claudin-4). Atlas Genet Cytogenet Oncol Haematol. October 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/CLDN4ID42975ch7q11.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38288/1/10-2005-CLDN4ID42975ch7q11.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:07:15 CEST 2012

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