Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CREB3L2

Identity

Other namesBBF2H7 (BBF2 human homolog on chromosome 7)
DKFZp586F2423
DKFZp686O19165
TCAG_1951439
Hugo CREB3L2
Location 7q34
Note (position on chromosome 7 sequence according to UCSC database: 137021995-137144058)

DNA/RNA

Description 122,064 Kb, 12 exons. Exon 1, containing the initiation ATG, is the largest (454 bp) and exon 7 the smallest (59 bp). Exon 12 includes the termination TAA codon. Introns 1 and 9 are the largest (73132 bp) and smallest (281 bp), respectively.
Transcription The strongest expression was seen in placenta, lung, spleen and intestine, and the weakest in heart, brain, skeletal muscle, thymus, colon and leukocytes. In fetal tissues, the weakest expression was detected in brain and heart. A splice variant, lacking exon 2, was found in placenta, spleen and fetal liver

Protein

Description 519 amino acids, 57 kDa. The amino acid sequence spanning residues 291-356 of the predicted human CREB3L2 protein contains a consensus B-ZIP domain highly similar to that in the CREB3L1, CREB3L3, CREB3L4, CREB3 and Drosophila Bbf-2 transcription factors with 80, 60, 59, 56 and 71% identity, respectively. It also contains the amino acid sequence RRKKKEY which is exactly conserved among CREB, CREM, ATF1, ATF6 and CREBL1. The leucine zipper motif of CREB3L2 is similar to that in CREB3L3 and CREB3L4 (pattern L-X6-C-X6-L-X6-L-X6-L-X6-L). It contains six repeats and consists of five leucines and one cysteine at the second heptad position (amino acid 328) of the leucine zipper. Downstream of the B-ZIP domain, CREB3L2 also contains a hydrophobic region, which was predicted to be an a-helical transmembrane domain (position 376-397; GTCLMVVVLCFAVAFGSFFQGY) by the prediction program PSORT II. This structural feature is also seen in the other members of the family, i.e. CREB3L1, CREB3L3, CREB3 and CREB3L4.
Function B-ZIP transcription factor
Homology CREB3L2 is a member of the old astrocyte specifically induced substance (OASIS) DNA binding and basic leucine zipper dimerization (B-ZIP) family of transcription factors, together with CREB3L1 (also known as OASIS), CREB3L3, CREB3 and CREB3L4.

Implicated in

Disease Low-grade fibromyxoid sarcoma (LGFMS), variant of fibrosarcoma
Prognosis Usually cured by surgical excision, but may metastasize in up to 10% of the cases
Cytogenetics t(7;16)(q33-34;p11) or more complex rearrangements involving 7q and 16p. Some cases show the presence of supernumerary ring chromosomes without any detectable breakpoint in 7q or 16p.
Hybrid/Mutated Gene The most common transcripts are due to fusion of exon 6 or 7 with exon 5 of FUS and CREB3L2, respectively. The breakpoints in the fusion transcripts so far reported have, however, varied from exon 5-7 of FUS and from intron 4 to exon 6 of CREB3L2.
Abnormal Protein FUS/CREB3L2. The chimera is coding for a protein containing the N-terminus of FUS, and the B-ZIP domain and the C-terminus of CREB3L2. In the FUS/CREB3L2 chimera, the bZIP-encoding domain of CREB3L2 comes under the control of the FUS promoter, which, in turn, may cause deregulation of genes normally controlled by CREB3L2.
  

External links

Nomenclature
HugoCREB3L2
GDBCREB3L2
Entrez_GeneCREB3L2  64764  cAMP responsive element binding protein 3-like 2
Cards
AtlasCREB3L2ID153ch7q33
GeneCardsCREB3L2
EnsemblCREB3L2 [Search_View]   ENSG00000182158 [Gene_View]
GenatlasCREB3L2
GeneLynxCREB3L2
eGenomeCREB3L2
euGene64764
Genomic and cartography
GoldenPathCREB3L2  -  7q34   chr7:137210267-137337386 -  7q34   [Description]    (hg18-Mar_2006)
EnsemblCREB3L2 - 7q34 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneCREB3L2
Gene and transcription
GenbankAJ549092 [ ENTREZ ]
GenbankAJ549093 [ ENTREZ ]
GenbankAJ549094 [ ENTREZ ]
GenbankAJ549387 [ ENTREZ ]
GenbankAK131517 [ ENTREZ ]
RefSeqNM_194071 [ SRS ]    NM_194071 [ ENTREZ ]
RefSeqAC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeqAC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeqNC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeqNT_007933 [ SRS ]    NT_007933 [ ENTREZ ]
RefSeqNT_079596 [ SRS ]    NT_079596 [ ENTREZ ]
RefSeqNW_923640 [ SRS ]    NW_923640 [ ENTREZ ]
AceViewCREB3L2 AceView - NCBI
UnigeneHs.490273 [ SRS ]    Hs.490273 [ NCBI ]     HS490273 [ spliceNest ]
Fast-db12143 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ70SY1 [ SRS]    Q70SY1 [ EXPASY ]     Q70SY1 [ INTERPRO ]
PrositePS50217 BZIP [ SRS ]    PS50217 BZIP [ Expasy ]
PrositePS00036 BZIP_BASIC [ SRS ]    PS00036 BZIP_BASIC [ Expasy ]
InterproIPR011616 bZIP_1 [ SRS ]    IPR011616 bZIP_1 [ EBI ]
InterproIPR004827 TF_bZIP [ SRS ]    IPR004827 TF_bZIP [ EBI ]
CluSTrQ70SY1
PfamPF00170 bZIP_1 [ SRS ]    PF00170 bZIP_1 [ Sanger ]    pfam00170 [ NCBI-CDD ]
SmartSM00338 BRLZ [EMBL]
BlocksQ70SY1
HPRD16391
Protein Interaction databases
DIPQ70SY1
IntActQ70SY1
Polymorphism : SNP, mutations, diseases
OMIM608834    [ map ]   
GENECLINICS608834
SNPCREB3L2 [dbSNP-NCBI]  
SNPNM_194071 [SNP-NCI]  
SNPCREB3L2 [GeneSNPs - Utah]  CREB3L2] [HGBASE - SRS]
HAPMAPCREB3L2 [HAPMAP]  
TICdbCREB3L2 [Translocation breakpoints In Cancer]  
HGMDCREB3L2
General knowledge
Family BrowserCREB3L2 [UCSC Family Browser]
SOURCENM_194071
SMDHs.490273
SAGEHs.490273
GOtranscription factor activity [Amigo]  transcription factor activity
GOnucleus [Amigo]  nucleus
GOendoplasmic reticulum [Amigo]  endoplasmic reticulum
GOendoplasmic reticulum membrane [Amigo]  endoplasmic reticulum membrane
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOresponse to unfolded protein [Amigo]  response to unfolded protein
GOmembrane [Amigo]  membrane
GOintegral to membrane [Amigo]  integral to membrane
GOsequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GOprotein dimerization activity [Amigo]  protein dimerization activity
PubGeneCREB3L2
TreeFamCREB3L2
CTD64764 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCREB3L2 Related clones (RZPD - Berlin)
PubMed
PubMed6 Pubmed reference(s) in LocusLink

Bibliography

Hyalinizing spindle cell tumor with giant rosettes--a soft tissue tumor with mesenchymal and neuroendocrine features. An immunohistochemical, ultrastructural, and cytogenetic analysis.
Bejarano PA, Padhya TA, Smith R, Blough R, Devitt JJ, Gluckman JL
Archives of pathology & laboratory medicine. 2000 ; 124 (8) : 1179-1184.
PMID 10923080
 
Low-grade fibromyxoid sarcoma and hyalinizing spindle cell tumor with giant rosettes share a common t(7;16)(q34;p11) translocation.
Reid R, de Silva MV, Paterson L, Ryan E, Fisher C
The American journal of surgical pathology. 2003 ; 27 (9) : 1229-1236.
PMID 12960807
 
Fusion of the FUS and BBF2H7 genes in low grade fibromyxoid sarcoma.
Storlazzi CT, Mertens F, Nascimento A, Isaksson M, Wejde J, Brosjo O, Mandahl N, Panagopoulos I
Human molecular genetics. 2003 ; 12 (18) : 2349-2358.
PMID 12915480
 
Expression of DOL54 is not restricted to myxoid liposarcomas with the FUS-DDIT3 chimera but is found in various sarcomas.
Panagopoulos I, Mertens F, Isaksson M, Mandahl N
Oncology reports. 2004 ; 12 (1) : 107-110.
PMID 15201968
 
The chimeric FUS/CREB3l2 gene is specific for low-grade fibromyxoid sarcoma.
Panagopoulos I, Storlazzi CT, Fletcher CD, Fletcher JA, Nascimento A, Domanski HA, Wejde J, Brosj O, Rydholm A, Isaksson M, Mandahl N, Mertens F
Genes, chromosomes & cancer. 2004 ; 40 (3) : 218-228.
PMID 15139001
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written10-2004Clelia Tiziana Storlazzi, Fredrik Mertens, Ioannis Panagopoulos

Citation

This paper should be referenced as such :
Storlazzi CT, Mertens F, Panagopoulos I . CREB3L2. Atlas Genet Cytogenet Oncol Haematol. October 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/CREB3L2ID153ch7q33.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:22:51 2008


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