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DRAM (damage-regulated autophagy modulator)

Identity

Other namesFLJ11259
HGNC (Hugo)
LocusID (NCBI) 55332
Location 12q23.2
Location_base_pair Starts at 102271105 and ends at 102317401 bp from pter ( according to hg19-Feb_2009)
Local_order Cen-SYCP3-GNPTAB-DRAM-LOC100129880-CCDC53-Tel

DNA/RNA

Description The gene encompasses 46.3 Kb of DNA and contains 7 exons. All exons are coding with exon 1 and exon 7 containing additional noncoding sequences at their 5' and 3' ends, respectively.
Transcription The major transcript is 3553 bp. An alternative, in-frame spliced variant has been described that skips exon 4 and exon 5. Significance of this transcript is not known.
DRAM mRNA is induced in a p53-dependent manner after cellular or genotoxic stress. Two alternative functional p53 consensus enhancer elements have been described. DRAM is also induced by p73.
DRAM mRNA appears to be widely expressed in various tissues and cell types. DRAM mRNA is reported to be decreased in various tumor types compared to normal tissue.
Pseudogene Chromosome 4 (LOC727709)

Protein

Description DRAM consists of 238 amino acids. It is predicted to have 6 transmembrane regions. DRAM is a lysosomal protein that is required for induction of autophagy by the p53 pathway.
Expression No expression data for endogenous DRAM is available at the protein level.
Localisation Overexpressed and tagged DRAM appears to localize to the lysosome. Localization of endogenous DRAM has not been reported.
Function The precise function of DRAM is unknown. The first paper reporting a biologic activity for DRAM was in 2006. There is strong evidence from multiple sources that DRAM (FLJ11259) is a direct p53 target gene and is induced in response to DNA damage. This includes global p53-induced gene expression and global p53 ChIP-PET studies. DRAM is a mediator of autophagy and is required for p53-induced apoptosis in response to DNA damage. However, DRAM has minimal effects alone on cell growth or apoptosis. DRAM mRNA is downregulated in some tumors compared to normal. Overall evidence suggests DRAM may be a tumor suppressor downstream of p53. However, whether the role of DRAM in autophagy is positive or negative and whether DRAM mediates cell death or survival in pathologic and physiologic settings may be complex and context dependent.
Homology DRAM is highly conserved in higher metazoans including C. elegans, Drosophila, and Zebrafish. DRAM shares no homology with any proteins of known function. DRAM has no known functional domains. Human DRAM shares significant homology with other 6 transmembrane proteins of unknown function, including TMEM77, TMEM150 (TM6P1), and FLJ12993. TM6P1 was cloned by subtractive hybridization as induced in starved rat liver. Nutrient starvation is a major physiologic inducer of autophagy.

Mutations

Note Have not been described.

Implicated in

Entity Autophagy
Note DRAM may be involved in diseases associated with deregulation of autophagy.
DRAM may link p53 and cancer suppression/ treatment to autophagy.
  

External links

Nomenclature
HGNC (Hugo)DRAM1   25645
Entrez_Gene (NCBI)DRAM1  55332  DNA-damage regulated autophagy modulator 1
Cards
AtlasDRAMID44093ch12q23
GeneCards (Weizmann)DRAM1
Ensembl (Hinxton)ENSG00000136048 [Gene_View]  chr12:102271105-102317401 [Contig_View]  DRAM1 [Vega]
AceView (NCBI)DRAM1
Genatlas (Paris)DRAM1
euGene (Indiana)55332
SOURCE (Stanford)NM_018370
Genomic and cartography
GoldenPath (UCSC)DRAM1  -  12q23.2   chr12:102271105-102317401 +  12q23.2   [Description]    (hg19-Feb_2009)
EnsemblDRAM1 - 12q23.2 [CytoView]
Mapping of homologs : NCBIDRAM1 [Mapview]
OMIM610776   
Gene and transcription
Genbank (Entrez)AI079438 AK002121 AK094923 AK297785 BC013773
RefSeq transcript (SRS)NM_018370
RefSeq transcript (Entrez)NM_018370
RefSeq genomic (SRS)AC_000144 NC_000012 NT_029419 NW_001838061
RefSeq genomic (Entrez)AC_000144 NC_000012 NT_029419 NW_001838061
Consensus coding sequences : CCDS (NCBI)DRAM1
Cluster EST : UnigeneHs.730859 [ SRS ] Hs.730859 [ NCBI ]
Alternative Splicing : Fast-db (Paris)12481
Alternative Splicing GalleryENSG00000136048
Gene ExpressionDRAM1 [ NCBI-GEO ]   DRAM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N682 (SRS) Q8N682 (Uniprot)
With graphics : InterProQ8N682
Splice isoforms : SwissVarQ8N682(Swissvar)
Domains : Interpro (SRS)Frag1/DRAM/Sfk1   
Domains : Interpro (EBI)Frag1/DRAM/Sfk1   
Related proteins : CluSTrQ8N682
Domain families : Pfam (SRS)Frag1 (PF10277)   
Domain families : Pfam (Sanger)Frag1 (PF10277)   
Domain families : Pfam (NCBI)pfam10277   
Blocks (Seattle)Q8N682
Human Protein AtlasENSG00000136048
HPRD07743
IPIIPI00300813   IPI00794266   IPI01021516   IPI01021087   IPI01021226   
Protein Interaction databases
DIP (DOE-UCLA)Q8N682
IntAct (EBI)Q8N682
FunCoupENSG00000136048
REACTOMEDRAM1
BioGRIDDRAM1
InParanoidQ8N682
Interologous Interaction database Q8N682
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DRAM1
SNP (GeneSNP Utah)DRAM1
SNP : HGBaseDRAM1
Genetic variants : HAPMAPDRAM1
Somatic Mutations in Cancer : COSMICDRAM1 
CONAN: Copy Number AnalysisDRAM1 
Mutations and Diseases : HGMDDRAM1
OMIM610776   
GENETests610776   
Disease Genetic AssociationDRAM1
Huge Navigator DRAM1 [HugePedia]  DRAM1 [HugeCancerGEM]
Genomic VariantsDRAM1
snp3D : Map Gene to Disease55332
General knowledge
Homologs : HomoloGeneDRAM1
Homology/Alignments : Family Browser (UCSC)DRAM1
Phylogenetic Trees/Animal Genes : TreeFamDRAM1
Chemical/Protein Interactions : CTD55332
Chemical/Pharm GKB GenePA165512564
Clinical trialDRAM1
Cancer Resource (Charite)ENSG00000136048
Ontology : AmiGOlysosomal membrane  autophagy  apoptotic process  membrane  integral to membrane  
Ontology : EGO-EBIlysosomal membrane  autophagy  apoptotic process  membrane  integral to membrane  
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGeneDRAM1
iHOPDRAM1

Bibliography

Identification of a new gene (rat TM6P1) encoding a fasting-inducible, integral membrane protein with six transmembrane domains.
Zhang J, D'Ercole AJ, Underwood LE.
Biochim Biophys Acta. 2000 Jun 21;1492(1):280-4.
PMID 10858565
 
A p53-dominant transcriptional response to cisplatin in testicular germ cell tumor-derived human embryonal carcinoma.
Kerley-Hamilton JS, Pike AM, Li N, DiRenzo J, Spinella MJ.
Oncogene. 2005 Sep 8;24(40):6090-100.
PMID 15940259
 
DRAM, a p53-induced modulator of autophagy, is critical for apoptosis.
Crighton D, Wilkinson S, O'Prey J, Syed N, Smith P, Harrison PR, Gasco M, Garrone O, Crook T, Ryan KM.
Cell. 2006 Jul 14;126(1):121-34.
PMID 16839881
 
p53 and metabolism: Inside the TIGAR.
Green DR, Chipuk JE.
Cell. 2006 Jul 14;126(1):30-2.
PMID 16839873
 
A global map of p53 transcription-factor binding sites in the human genome.
Wei CL, Wu Q, Vega VB, Chiu KP, Ng P, Zhang T, Shahab A, Yong HC, Fu Y, Weng Z, Liu J, Zhao XD, Chew JL, Lee YL, Kuznetsov VA, Sung WK, Miller LD, Lim B, Liu ET, Yu Q, Ng HH, Ruan Y.
Cell. 2006 Jan 13;124(1):207-19.
PMID 16413492
 
p73 regulates DRAM-independent autophagy that does not contribute to programmed cell death.
Crighton D, O'Prey J, Bell HS, Ryan KM.
Cell Death Differ. 2007 Jun;14(6):1071-9. Epub 2007 Feb 16.
PMID 17304243
 
DRAM links autophagy to p53 and programmed cell death.
Crighton D, Wilkinson S, Ryan KM.
Autophagy. 2007 Jan-Feb;3(1):72-4. Epub 2007 Jan 28.
PMID 17102582
 
The direct p53 target gene, FLJ11259/DRAM, is a member of a novel family of transmembrane proteins.
Kerley-Hamilton JS, Pike AM, Hutchinson JA, Freemantle SJ, Spinella MJ.
Biochim Biophys Acta. 2007 Apr;1769(4):209-19. Epub 2007 Feb 22.
PMID 17397945
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2008Michael J Spinella
Department of Pharmacology, Dartmouth Medical School, 7650 Remsen, Hanover NH 03755, USA

Citation

This paper should be referenced as such :
Spinella MJ . DRAM (damage-regulated autophagy modulator). Atlas Genet Cytogenet Oncol Haematol. April 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/DRAMID44093ch12q23.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/44422/1/04-2008-DRAMID44093ch12q23.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:08:17 CEST 2012

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