| Description | The full-length human ER beta protein is 530 amino acids; 59.2 KDa, is also named ER beta1. Another isoform, ER beta2, is formed by alternative splicing of the mRNA. ER beta2 encodes a protein of 495 amino acid residues, with a molecular weight of 55.5 kDa. ER beta2 has a unique C-terminus, where the amino acids corresponding to exon 8 are replaced with 26 unique amino acids. |
| Expression | ER beta is mainly expressed in tissues such as the ovary (granulosa cells), prostate (epithelium), testis, epididymis, colon, lung, bladder, bone marrow, salivary gland, vascular endothelium and regions of the brain, including hypothalamus and cortex. |
| Localisation | Nucleus |
| Function | Cellular signaling of estrogen is mediated through two estrogen receptors (ERs), ER alpha and ER beta. The first ER, now known as ER alpha, was cloned in 1986. This receptor was regarded as the only ER that mediates estrogenic effects, until a second ER, now known as ER beta, was cloned from rat prostate. ER alpha and ER beta belong to the superfamily of nuclear receptors and specifically to the family of steroid receptors that act as ligand-regulated transcription factors. ER alpha and ER beta have a high sequence homology and share affinity for the same ligands and DNA response elements.
Binding of ligand activates ERs, by a mechanism that involves dissociation of heat shock proteins and dimerization of receptor proteins. Estrogen-modulated gene transcription is exerted via different mechanisms: the genomic and the nongenomic pathways. The canonical model for ER-mediated regulation of gene expression involves the direct binding of dimeric ER to DNA sequences known as estrogen response elements (EREs), followed by recruitment of a variety of coregulators to alter chromatin structure and facilitate recruitment of the RNA polymerase II (Pol II) transcriptional machinery.
The transcriptional activity of ERs can be modulated by different types of post-translational modifications such as phosphorylation, acetylation, sumoylation, ubiquitination and methylation.
ER alpha and ER beta exhibit different affinities for some natural compounds, and distinct expression patterns in a variety of tissues. Transcriptional activation by ER alpha is mediated by two distinct activation functions: the constitutively active AF-1 and the ligand-dependent AF-2. ER beta seems to have a weaker corresponding AF-1 function and thus depends more on the AF-2 for its transcriptional activation function. ER alpha and ER beta have different activities in certain ligand, cell-type, and promoter contexts. |
| Homology | Chimpanzee (Pan troglodytes), dog (Canis lupus familiaris), cow (Bos taurus), mouse (Mus musculus), rat (Rattus norvegicus) chicken (Gallus gallus), zebrafish (Danio rerio). |
| Note | |
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| Entity | Various cancers |
| Note | Targeted disruption of ER beta in mice has suggested roles for ER beta in many tissues and organs, including the ovary, uterus, mammary gland, brain, immune system and ventral prostate. |
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| Entity | Prostate cancer |
| Disease | Estrogens can have profound effects on prostate growth and differentiation as well as in the pathogenesis of prostate cancer. In the adult rodent ventral prostate, ER beta is expressed in the epithelial cells, whereas ER alpha is expressed in the stroma. The estrogenic effects in the prostate may therefore be exerted by both ERs but in different cells. ER beta knockout mice display signs of prostatic hyperplasia with aging. |
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| Entity | Breast cancer |
| Disease | Estrogen is essential for growth and development of the mammary glands, and has been associated with promotion and growth of breast cancer. ER beta is found in both ductal and lobular epithelial and stromal cells of the rodent, whereas ER alpha is only found in the ductal and lobular epithelial cells and not in stroma. Recent studies have indicated a protective role of ER beta against breast cancer development. In vitro studies indicated that ER beta is an important modulator of proliferation and invasion of breast cancer cells. |
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| Entity | Colon cancer |
| Disease | ER beta is the predominant ER in the colonic epithelium, suggesting that effects of estrogen in the colon are mediated by ER beta. In colons from ER beta knockout mice, the number of proliferating cells was higher, and the migration of labelled cells from base to lumen of the crypts was faster when compared to wild-type mice. Additionally, immunohistochemical staining revealed fewer apoptotic cells (cleaved caspase 3-positive), a significant decrease in expression of the epithelial differentiation marker, cytokeratin CK20, the adherens junction protein, alpha -catenin, and the hemidesmosomal protein, plectin, in ER beta knockout mice. These findings suggest a role for ER beta in the organization and architectural maintenance of the colon. |
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| Entity | Ovarian cancer |
| Disease | A loss of ER beta expression or a decrease in ER beta/ER alpha ratio in epithelial ovarian cancer cells as compared with normal tissues has been reported by several groups. ER beta overexpression in ovarian cancer cells has been reported to exert antitumoral effects. |
| | |
| International Union of Pharmacology. LXIV. Estrogen receptors. |
| Dahlman-Wright K, Cavailles V, Fuqua SA, Jordan VC, Katzenellenbogen JA, Korach KS, Maggi A, Muramatsu M, Parker MG, Gustafsson JA. |
| Pharmacol Rev. 2006 Dec;58(4):773-81. (REVIEW |
| PMID 17132854 |
| |
| Estrogen receptor-beta: recent lessons from in vivo studies. |
| Harris HA. |
| Mol Endocrinol. 2007 Jan;21(1):1-13. (REVIEW) |
| PMID 16556737 |
| |
| Cloning of a novel receptor expressed in rat prostate and ovary. |
| Kuiper GG, Enmark E, Pelto-Huikko M, Nilsson S, Gustafsson JA. |
| Proc Natl Acad Sci U S A. 1996 Jun 11;93(12):5925-30. |
| PMID 8650195 |
| |
| Mechanisms of estrogen action. |
| Nilsson S, Mäkelä S, Treuter E, Tujague M, Thomsen J, Andersson G, Enmark E, Pettersson K, Warner M, Gustafsson JA. |
| Physiol Rev. 2001 Oct;81(4):1535-65. (REVIEW) |
| PMID 11581496 |
| |
| Molecular cloning and characterization of human estrogen receptor betacx: a potential inhibitor ofestrogen action in human. |
| Ogawa S, Inoue S, Watanabe T, Orimo A, Hosoi T, Ouchi Y, Muramatsu M. |
| Nucleic Acids Res. 1998 Aug 1;26(15):3505-12. |
| PMID 9671811 |
| |
| Estrogen receptor beta: an overview and update. |
| Zhao C, Dahlman-Wright K, Gustafsson JA. |
| Nucl Recept Signal. 2008 Feb 1;6:e003. (REVIEW) |
| PMID 18301783 |
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| Nomenclature |
|---|
| HGNC (Hugo) | ESR2 3468 |
| Cards |
|---|
| Atlas | ESR2ID40500ch14q23 |
| Entrez_Gene (NCBI) | ESR2 2100 estrogen receptor 2 |
| Aliases | ER-BETA; ESR-BETA; ESRB; ESTRB; |
| Erb; NR3A2; ODG8 |
| GeneCards (Weizmann) | ESR2 |
| Ensembl hg19 (Hinxton) | ENSG00000140009 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000140009 [Gene_View] ENSG00000140009 [Sequence] chr14:64233029-64294410 [Contig_View] ESR2 [Vega] |
| ICGC DataPortal | ENSG00000140009 |
| TCGA cBioPortal | ESR2 |
| AceView (NCBI) | ESR2 |
| Genatlas (Paris) | ESR2 |
| WikiGenes | 2100 |
| SOURCE (Princeton) | ESR2 |
| Genetics Home Reference (NIH) | ESR2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | ESR2 - chr14:64233029-64294410 - 14q23.2-q23.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | ESR2 - 14q23.2-q23.3 [Description] (hg19-Feb_2009) |
| GoldenPath | ESR2 - 14q23.2-q23.3 [CytoView hg19] ESR2 - 14q23.2-q23.3 [CytoView hg38] |
| ImmunoBase | ENSG00000140009 |
| Mapping of homologs : NCBI | ESR2 [Mapview hg19] ESR2 [Mapview hg38] |
| OMIM | 601663 618187 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB006589 AB006590 AB209620 AF047463 AF051427 |
| RefSeq transcript (Entrez) | NM_001040275 NM_001040276 NM_001214902 NM_001214903 NM_001271876 NM_001271877 NM_001291712 NM_001291723 NM_001437 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | ESR2 |
| Alternative Splicing Gallery | ENSG00000140009 |
| Gene Expression | ESR2 [ NCBI-GEO ] ESR2 [ EBI - ARRAY_EXPRESS ]
ESR2 [ SEEK ] ESR2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | ESR2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 2100 |
| GTEX Portal (Tissue expression) | ESR2 |
| Human Protein Atlas | ENSG00000140009-ESR2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q92731 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q92731 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q92731 |
| Splice isoforms : SwissVar | Q92731 |
| PhosPhoSitePlus | Q92731 |
| Domaine pattern : Prosite (Expaxy) | NR_LBD (PS51843) NUCLEAR_REC_DBD_1 (PS00031) NUCLEAR_REC_DBD_2 (PS51030) |
| Domains : Interpro (EBI) | ER-beta/gamma Estrogen_rcpt_beta_N NHR-like_dom_sf Nucl_hrmn_rcpt_lig-bd Nuclear_hrmn_rcpt Oest_rcpt/oest-rel_rcp Znf_hrmn_rcpt Znf_NHR/GATA |
| Domain families : Pfam (Sanger) | ERbeta_N (PF12497) Hormone_recep (PF00104) zf-C4 (PF00105) |
| Domain families : Pfam (NCBI) | pfam12497 pfam00104 pfam00105 |
| Domain families : Smart (EMBL) | HOLI (SM00430) ZnF_C4 (SM00399) |
| Conserved Domain (NCBI) | ESR2 |
| DMDM Disease mutations | 2100 |
| Blocks (Seattle) | ESR2 |
| PDB (RSDB) | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| PDB Europe | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| PDB (PDBSum) | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| PDB (IMB) | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| Structural Biology KnowledgeBase | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| SCOP (Structural Classification of Proteins) | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| CATH (Classification of proteins structures) | 1L2J 1NDE 1QKM 1U3Q 1U3R 1U3S 1U9E 1X76 1X78 1X7B 1X7J 1YY4 1YYE 1ZAF 2FSZ 2GIU 2I0G 2JJ3 2NV7 2QTU 2YJD 2YLY 2Z4B 3OLL 3OLS 3OMO 3OMP 3OMQ 4J24 4J26 4ZI1 5TOA |
| Superfamily | Q92731 |
| Human Protein Atlas [tissue] | ENSG00000140009-ESR2 [tissue] |
| Peptide Atlas | Q92731 |
| HPRD | 03390 |
| IPI | IPI00023212 IPI00218153 IPI00397583 IPI00218155 IPI00218156 IPI00218157 IPI00218158 IPI01019014 IPI00384140 IPI01024780 IPI00218159 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q92731 |
| IntAct (EBI) | Q92731 |
| FunCoup | ENSG00000140009 |
| BioGRID | ESR2 |
| STRING (EMBL) | ESR2 |
| ZODIAC | ESR2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q92731 |
| Ontology : AmiGO | "negative regulation of transcription by RNA polymerase II nuclear chromatin RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding DNA-binding transcription factor activity steroid hormone receptor activity transcription coactivator activity nuclear receptor activity nuclear receptor activity steroid binding steroid binding protein binding nucleus nucleus nucleoplasm mitochondrion regulation of transcription, DNA-templated transcription initiation from RNA polymerase II promoter signal transduction cell-cell signaling zinc ion binding enzyme binding estrogen receptor activity estrogen receptor activity estrogen receptor activity negative regulation of cell growth intracellular estrogen receptor signaling pathway estrogen response element binding host cell nucleus identical protein binding positive regulation of transcription, DNA-templated receptor antagonist activity positive regulation of DNA-binding transcription factor activity repressing transcription factor binding negative regulation of signaling receptor activity" |
| Ontology : EGO-EBI | "negative regulation of transcription by RNA polymerase II nuclear chromatin RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding DNA-binding transcription factor activity steroid hormone receptor activity transcription coactivator activity nuclear receptor activity nuclear receptor activity steroid binding steroid binding protein binding nucleus nucleus nucleoplasm mitochondrion regulation of transcription, DNA-templated transcription initiation from RNA polymerase II promoter signal transduction cell-cell signaling zinc ion binding enzyme binding estrogen receptor activity estrogen receptor activity estrogen receptor activity negative regulation of cell growth intracellular estrogen receptor signaling pathway estrogen response element binding host cell nucleus identical protein binding positive regulation of transcription, DNA-templated receptor antagonist activity positive regulation of DNA-binding transcription factor activity repressing transcription factor binding negative regulation of signaling receptor activity" |
| Pathways : KEGG | Estrogen signaling pathway Prolactin signaling pathway |
| REACTOME | Q92731 [protein] |
| REACTOME Pathways | R-HSA-9009391 [pathway] |
| NDEx Network | ESR2 |
| Atlas of Cancer Signalling Network | ESR2 |
| Wikipedia pathways | ESR2 |
| Orthology - Evolution |
|---|
| OrthoDB | 2100 |
| GeneTree (enSembl) | ENSG00000140009 |
| Phylogenetic Trees/Animal Genes : TreeFam | ESR2 |
| HOGENOM | Q92731 |
| Homologs : HomoloGene | ESR2 |
| Homology/Alignments : Family Browser (UCSC) | ESR2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Fusion_Hub | FOXN3--ESR2 NSUN7--ESR2 RB1--ESR2 |
| Fusion : Quiver | ESR2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | ESR2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | ESR2 |
| dbVar | ESR2 |
| ClinVar | ESR2 |
| 1000_Genomes | ESR2 |
| Exome Variant Server | ESR2 |
| ExAC (Exome Aggregation Consortium) | ENSG00000140009 |
| GNOMAD Browser | ENSG00000140009 |
| Varsome Browser | ESR2 |
| Genetic variants : HAPMAP | 2100 |
| Genomic Variants (DGV) | ESR2 [DGVbeta] |
| DECIPHER | ESR2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | ESR2 |
| Mutations |
|---|
| ICGC Data Portal | ESR2 |
| TCGA Data Portal | ESR2 |
| Broad Tumor Portal | ESR2 |
| OASIS Portal | ESR2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | ESR2 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | ESR2 |
| Mutations and Diseases : HGMD | ESR2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | MSeqDR-LSDB Mitochondrial Disease Locus Specific Database |
| BioMuta | search ESR2 |
| DgiDB (Drug Gene Interaction Database) | ESR2 |
| DoCM (Curated mutations) | ESR2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | ESR2 (select a term) |
| intoGen | ESR2 |
| NCG5 (London) | ESR2 |
| Cancer3D | ESR2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 601663 618187 |
| Orphanet | |
| DisGeNET | ESR2 |
| Medgen | ESR2 |
| Genetic Testing Registry | ESR2
|
| NextProt | Q92731 [Medical] |
| TSGene | 2100 |
| GENETests | ESR2 |
| Target Validation | ESR2 |
| Huge Navigator |
ESR2 [HugePedia] |
| snp3D : Map Gene to Disease | 2100 |
| BioCentury BCIQ | ESR2 |
| ClinGen | ESR2 |
| Clinical trials, drugs, therapy |
|---|
| Protein Interactions : CTD | 2100 |
| Pharm GKB Gene | PA27886 |
| Pharm GKB Pathways | PA145011120 |
| Clinical trial | ESR2 |
| Miscellaneous |
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| canSAR (ICR) | ESR2 (select the gene name) |
| Harmonizome | ESR2 |
| DataMed Index | ESR2 |
| Probes |
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| Litterature |
|---|
| PubMed | 499 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | ESR2 |
| EVEX | ESR2 |
| GoPubMed | ESR2 |
| iHOP | ESR2 |
