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ETO (eigth twenty one)

RUNX1T1 (runt-related transcription factor 1; translocated to, 1 (cyclin D-related))

Identity

Other namesMTG8
CDR (cyclin D related gene),
AML1T1 (AML1 translocated to, 1),
CBFA2T1 (CBFA2 translocated to, 1)
HGNC (Hugo) RUNX1T1
Location 8q22
Location_base_pair Starts at 93040328 and ends at 93144367 bp from pter ( according to hg18-Mar_2006)  [Mapping]
 
  ETO (8q22) in normal cells: clone dJ1155L8 - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi

DNA/RNA

Transcription from telomere to centromere; alternate slicing at the 5' end -> MTG8A and MTG8B

Protein

 
  Protein Diagram
Description 577 or 604 amino acids ( MTG8A and MTG8B respectively), with a different N-term; 3 proline rich domains (as in transcription factors), 2 of which being also serine and threonine rich (as phosphorylation sites) and 2 Zn fingers (cys.cys/cys.cys and cys.cys/his.cys), a PEST region at the C terminus (conferring rapid intracellular degradation)
Expression mainly in the brain; not in hematopoietic cells (debated)
Localisation nuclear (probable)
Function putative transcription factor
Homology 99% identical to the murine homolog

Implicated in

Entity t(8;21)(q24;q22)/ANLL. --> AML1 - ETO
Disease ANLL, M2 mostly
Prognosis CR is obtained; median survival (1.5-2 yrs) is the range with other ANLL or relatively better
Cytogenetics additional anomalies are frequent: loss of Y or X chromosome, del(7q)/-7, +8, del (9q); complex t(8;21;Var) are known and have revealed that the crucial event lies on der(8); in agrement with the fact that both genes are transcribed from telomere to centromere
Hybrid/Mutated Gene 5' AML1 - 3' ETO
Abnormal Protein N-term AML1 with the Runt domain fused to the nearly entire ETO
Oncogenesis the fusion protein retain the ability to recognize the AML1 concensus binding site (--> negative dominant competitor with the normal AML1) and to dimerize with the cbtb/CBTB subunit --> probable altered transcriptional regulation of normal AML1 target genes
  

External links

Nomenclature
HGNC (Hugo)RUNX1T1   1535
Entrez_Gene (NCBI)RUNX1T1  862  runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Cards
AtlasETO
GeneCards (Weizmann)RUNX1T1
Ensembl (Hinxton)ENSG00000079102 [Gene_View]  RUNX1T1 [Vega]
AceView (NCBI)RUNX1T1
Genatlas (Paris)RUNX1T1
euGene (Indiana)862
SOURCE (Stanford)NM_004349 NM_175634 NM_175635 NM_175636
Genomic and cartography
GoldenPath (UCSC)RUNX1T1  -  8q22   chr8:93040328-93144367 -  8q22   [Description]    (hg18-Mar_2006)
EnsemblRUNX1T1 - 8q22 [CytoView]
Mapping of homologs : NCBIRUNX1T1 [Mapview]
OMIM133435   
Gene and transcription
Gene : Genbank (Entrez)AA506749 AF018283 AK297616 AK312592 BC005850
Reference sequence (RefSeq transcript) :SRSNM_004349 NM_175634 NM_175635 NM_175636
Reference transcript : EntrezNM_004349 NM_175634 NM_175635 NM_175636
RefSeq genomic : SRSAC_000051 AC_000140 NC_000008 NT_008046 NW_001839136 NW_923984
RefSeq genomic : EntrezAC_000051 AC_000140 NC_000008 NT_008046 NW_001839136 NW_923984
Consensus coding sequences : CCDS NCBIRUNX1T1
Cluster EST : UnigeneHs.368431 [ SRS ] Hs.368431 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6671
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ06455 (SRS) Q06455 (Expasy) Q06455 (Uniprot)
With graphics : InterProQ06455
Splice isoforms : VarSplice FASTAQ06455(VarSplice FASTA)
Domaine pattern : Prosite (SRS)TAFH (PS51119)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domain pattern : Prosite (Expaxy)TAFH (PS51119)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (SRS)ETO    MTG8    NHR2    TAFH_NHR1    Znf_MYND   
Domains : Interpro (EBI)ETO    MTG8    NHR2    TAFH_NHR1    Znf_MYND   
Related proteins : CluSTrQ06455
Domain families : Pfam SRSNHR2 (PF08788)    TAFH (PF07531)    zf-MYND (PF01753)   
Domain families : Pfam SangerNHR2 (PF08788)    TAFH (PF07531)    zf-MYND (PF01753)   
Domain families : Pfam NCBIpfam08788    pfam07531    pfam01753   
Domain families : Smart EMBLTAFH (SM00549)
Blocks (Seattle)Q06455
Crystal structure of protein : PDB SRS1WQ6    2DJ8    2H7B    2OD1    2ODD    2PP4   
Crystal structure of protein : PDBSum1WQ6    2DJ8    2H7B    2OD1    2ODD    2PP4   
Crystal structure of protein : IMB1WQ6    2DJ8    2H7B    2OD1    2ODD    2PP4   
Crystal structure of protein : PDB RSDB1WQ6    2DJ8    2H7B    2OD1    2ODD    2PP4   
HPRD00590
Protein Interaction databases
DIP (DOE-UCLA)Q06455
IntAct (EBI)Q06455
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIRUNX1T1
SNP : GeneSNP UtahRUNX1T1
SNP : HGBaseRUNX1T1
Genetic variants : HAPMAPRUNX1T1
Somatic Mutations in Cancer : COSMICRUNX1T1 
Translocation Breakpoints in Cancer : TICdbRUNX1T1 
Mutations and Diseases : HGMDRUNX1T1
Hereditary diseases : OMIM133435   
Hereditary diseases : GENETests133435   
Diseases : Genetic AssociationRUNX1T1
General knowledge
Homologs : HomoloGeneRUNX1T1
Homology/Alignments : Family Browser UCSCRUNX1T1
Phylogenetic Trees/Animal Genes : TreeFamRUNX1T1
Chemical/Protein Interactions : CTD862
Keywords Ontology : AmiGOtranscription factor activity  protein binding  nucleus  generation of precursor metabolites and energy  transcription  regulation of transcription, DNA-dependent  zinc ion binding  transcription repressor activity  protein homodimerization activity  fat cell differentiation  metal ion binding  regulation of DNA binding  
Keywords Ontology : EGO-EBItranscription factor activity  protein binding  nucleus  generation of precursor metabolites and energy  transcription  regulation of transcription, DNA-dependent  zinc ion binding  transcription repressor activity  protein homodimerization activity  fat cell differentiation  metal ion binding  regulation of DNA binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
ProbeETO (8q22) in normal cells (Bari)
Probes : ImagenesRUNX1T1 Related clones (RZPD - Berlin)
Literature
PubMed83 Pubmed reference(s) in Entrez
PubGeneRUNX1T1

Bibliography

AML1 and the 8;21 and 3;21 translocations in acute and chronic myeloid leukemia.
Nucifora G, Rowley JD
Blood. 1995 ; 86 (1) : 1-14.
PMID 7795214
 
Molecular basis of the t(8;21) translocation in acute myeloid leukaemia.
Ohki M
Seminars in cancer biology. 1993 ; 4 (6) : 369-375.
PMID 8142622
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written10-1997Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . ETO (eigth twenty one); RUNX1T1 (runt-related transcription factor 1; translocated to, 1 (cyclin D-related)). Atlas Genet Cytogenet Oncol Haematol. October 1997 .
URL : http://AtlasGeneticsOncology.org/Genes/ETO.html

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indexed on : Sat Jun 27 16:38:08 CEST 2009

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