Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FCGR2B

Identity

Other namesCD32
FCG2
FCGR2
IGFR2
HGNC (Hugo) FCGR2B
Location 1q22
Location_base_pair Starts at 161632940 and ends at 161647951 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order location, by FISH/genome sequencing; FCGR2B is contained within a locus that spans approximately 200kb and that encodes 5 low affinity IgG Fc receptor genes.The published gene orientation is as follows; Cen 1q -- 3' FCGR2A 5' -- 5'- FCGR3A - 3' -- 3' FCGR2B 5' -- 5' - FCGR3B - 3' -- 5'- FCGR2C- 3'.
 
  Probe(s) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics

DNA/RNA

Description The FCGR2B gene spans a 15kb genomic region; Gene orientation : centromere - 3' FCGR2B 5' - telomere; 8 exons (denoted S1, S2, EC1, EC2, TM, IC1, IC2, IC3). S1 and S2 encode the signal peptide domain, EC1 and EC2 encode the extracellular domain, TM encodes the transmembrane domain and IC1, IC2, IC3 encode the intracytoplasmic region.
Transcription 1.7kb mRNA. Two alternately spliced mRNA exist in humans; FcgRIIb1 and FcgRIIb2 (a 19 aa insertion encoded by IC1 is present in b1 but not in b2).

Protein

Note called Fc gamma RIIB
Description 40kD transmembrane glycoprotein that possesses an intracytoplasmic Immunoreceptor Tyrosine-based Inhibition Motif (ITIM) (encoded by IC3).
Expression B, myeloid and mast cells.
Localisation Transmembrane.
Function Low affinity IgG Fc receptor. Founding member ITIM family of immune inhibitory receptors. Fc gamma RIIB functions to down-regulate activatory responses mediated by Immunoreceptor Tyrosine-based Inhibition Motif (ITAM) bearing receptors such as the B-cell receptor on B cells. For example, on B-cells, negative regulation of B-cell receptor activatory signalling is initiated through co-recruitment of BCR and Fc gamma RIIB to IgG/ immune complexes. This leads to tyrosyl phosphorylation of the Fc gamma RIIB ITIM motif / recruitment of the inositol phosphatase SHIP and activation of the adaptor protein Dok - these events ultimately lead to the inhibition of ITAM-dependant Ca++ mobilisation and cellular proliferation (reduced MAPK signalling), respectively.
A proapoptotic signal through the Fc gamma RIIB transmembrane sequence has been described in conditions of homo-aggregation of Fc gamma RII on murine B cells.
Homology Contains two immunoglobulin-like C2 domains.

Implicated in

Entity 1q21-23 rearrangements in NHL (Nnon-Hodgkins Lymphoma)
Disease NHL (< 5% of cases with 1q21-23 breaks)
Prognosis It is now known that cytogenetically determined 1q21-23 breaks can target a diversity of 1q21-23 genes. Early data has suggested a poor prognosis for 1q21 rearrangements in diffuse large cell lymphoma.
Cytogenetics Deregulation of the FCGR2B gene by chromosomal translocation was first demonstrated in 3 NHL patients that showed a t(1;22)(q22;q22) in association with a t(14;18)(q32;q21). Two further cases of NHL with rearrangements affecting the FCGR2B region have since been identified. Both cases also showed t(14;18)(see below for description). This suggests a role for this deregulation in lymphoma progression.
Hybrid/Mutated Gene Dysregulation of the FCGR2B gene has been identified as a consequence of a t(1;22)(q22;q11) (3 patients) and t(1;14)(q21;q32) (1 patient). The FCGR2B coding sequence and promoter region appear to remain intact in these translocations. The principal consequence is overexpression of the Fc gamma RIIb2 isoform of Fc gamma RIIB. Deregulation of FCGR2B most likely occurs as a consequence of Ig gene transcriptional enhancer activity. Other mechanisms may exist ; an NHL patient with dup(1)(q21q25) and rearrangement in the FCGR2B region has also been identified.
Abnormal Protein None
Oncogenesis Contribution of FCGR2B deregulation to lymphoma development or progression is currently not known.
  

External links

Nomenclature
HGNC (Hugo)FCGR2B   3618
Entrez_Gene (NCBI)FCGR2B  2213  Fc fragment of IgG, low affinity IIb, receptor (CD32)
Cards
AtlasFCGR2BID397
GeneCards (Weizmann)FCGR2B
Ensembl (Hinxton)ENSG00000072694 [Gene_View]  FCGR2B [Vega]
AceView (NCBI)FCGR2B
Genatlas (Paris)FCGR2B
euGene (Indiana)2213
SOURCE (Stanford)NM_001002273 NM_001002274 NM_001002275 NM_004001
Gene Expression (Array Express) ENSG00000072694
Genomic and cartography
GoldenPath (UCSC)FCGR2B  -  1q22   chr1:161632940-161647951 +  1q23   [Description]    (hg19-Feb_2009)
EnsemblFCGR2B - 1q23 [CytoView]
Mapping of homologs : NCBIFCGR2B [Mapview]
OMIM152700   604590   611162   
Gene and transcription
Gene : Genbank (Entrez)AB050934 AB051387 AB209585 AF543826 AI692546
Reference sequence (RefSeq transcript) :SRSNM_001002273 NM_001002274 NM_001002275 NM_004001
Reference transcript : EntrezNM_001002273 NM_001002274 NM_001002275 NM_004001
RefSeq genomic : SRSAC_000044 AC_000133 NC_000001 NT_004487 NW_001838532 NW_926128
RefSeq genomic : EntrezAC_000044 AC_000133 NC_000001 NT_004487 NW_001838532 NW_926128
Consensus coding sequences : CCDS NCBIFCGR2B
Cluster EST : UnigeneHs.654395 [ SRS ] Hs.654395 [ NCBI ]
Alternative Splicing : Fast-db (Paris)17499
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP31994 (SRS) P31994 (Expasy) P31994 (Uniprot)
With graphics : InterProP31994
Splice isoforms : VarSplice FASTAP31994(VarSplice FASTA)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domain pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_sub   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_sub   
Related proteins : CluSTrP31994
Domain families : Pfam SRS
Domain families : Pfam Sanger
Domain families : Pfam NCBI
Domain families : Smart EMBLIG (SM00409)  
Blocks (Seattle)P31994
Crystal structure of protein : PDB SRS2FCB   
Crystal structure of protein : PDBSum2FCB   
Crystal structure of protein : IMB2FCB   
Crystal structure of protein : PDB RSDB2FCB   
Human Protein AtlasENSG00000072694
HPRD06849
Protein Interaction databases
DIP (DOE-UCLA)P31994
IntAct (EBI)P31994
FunCoupENSG00000072694
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIFCGR2B
SNP : GeneSNP UtahFCGR2B
SNP : HGBaseFCGR2B
Genetic variants : HAPMAPFCGR2B
Cancer Gene: CensusFCGR2B 
Somatic Mutations in Cancer : COSMICFCGR2B 
Translocation Breakpoints in Cancer : TICdbFCGR2B 
Mutations and Diseases : HGMDFCGR2B
Hereditary diseases : OMIM152700    604590    611162   
Hereditary diseases : GENETests152700    604590    611162   
Diseases : Genetic AssociationFCGR2B
General knowledge
Homologs : HomoloGeneFCGR2B
Homology/Alignments : Family Browser UCSCFCGR2B
Phylogenetic Trees/Animal Genes : TreeFamFCGR2B
Chemical/Protein Interactions : CTD2213
Keywords Ontology : AmiGOreceptor activity  protein binding  plasma membrane  immune response  signal transduction  integral to membrane  IgG binding  interspecies interaction between organisms  
Keywords Ontology : EGO-EBIreceptor activity  protein binding  plasma membrane  immune response  signal transduction  integral to membrane  IgG binding  interspecies interaction between organisms  
Pathways : BIOCARTAB Lymphocyte Cell Surface Molecules [Genes]   
Pathways : KEGGB cell receptor signaling pathway
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesFCGR2B Related clones (RZPD - Berlin)
Literature
PubMed103 Pubmed reference(s) in Entrez
PubGeneFCGR2B

Bibliography

Fc receptor biology.
Daˆ´ron M
Annual review of immunology. 1997 ; 15 : 203-234.
PMID 9143687
 
The IgG Fc receptor, FcgammaRIIB, is a target for deregulation by chromosomal translocation in malignant lymphoma.
Callanan MB, Le Baccon P, Mossuz P, Duley S, Bastard C, Hamoudi R, Dyer MJ, Klobeck G, Rimokh R, Sotto JJ, Leroux D
Proceedings of the National Academy of Sciences of the United States of America. 2000 ; 97 (1) : 309-314.
PMID 10618414
 
Immune inhibitory receptors.
Ravetch JV, Lanier LL
Science (New York, N.Y.). 2000 ; 290 (5489) : 84-89.
PMID 11021804
 
Deregulation of FCGR2B expression by 1q21 rearrangements in follicular lymphomas.
Chen W, Palanisamy N, Schmidt H, Teruya-Feldstein J, Jhanwar SC, Zelenetz AD, Houldsworth J, Chaganti RS
Oncogene. 2001 ; 20 (52) : 7686-7693.
PMID 11753646
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written02-2002Mary Callanan, Dominique Leroux

Citation

This paper should be referenced as such :
Callanan M, Leroux D . FCGR2B. Atlas Genet Cytogenet Oncol Haematol. February 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/FCGR2BID397.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 15 14:43:50 CEST 2010

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