VEGFD (c-fos induced growth factor (vascular endothelial growth factor D))
2012-05-01 Marina Rocchigiani  , Salvatore Oliviero   AffiliationDepartment of Molecular Biology, University of Siena, Italy
DNA/RNA

Description
The VEGFD gene consists of 7 exons and spans 38865 bases on chromosome X in minus strand orientation.
The upstream promoter sequence does not contain a canonical TATA box. The promoter sequence contains an optimal AP-1 binding site at position -54 from the start site.
The upstream promoter sequence does not contain a canonical TATA box. The promoter sequence contains an optimal AP-1 binding site at position -54 from the start site.
Transcription
The mRNA transcribed from this gene is 2110 nucleotides long.
Proteins

The VEGF-D chain is a secreted protein synthesised as 354 amino acid precursor containing a signal peptide (AA:1-21), an N-propeptide (AA:22-88), a VHD (VEGF Homology Domain, AA:89-205) and a C-propeptide (AA:206-354).
Description
VEGF-D is a member of the Platelet-Derived Growth Factor/Vascular Endothelial Growth Factor (PDGF/VEGF) family that contains a conserved domain of eight cysteine residues forming the typical cystine-knot structure involved in the formation of the biologically active dimer (Debinski et al., 2001; Rocchigiani et al., 1998; Yamada et al., 1997; Joukov et al., 1996). The human VEGF family consists of 5 members: VEGF-A, VEGF-B, VEGF-C, VEGF-D and Placental Growth Factor (PlGF) which differ in their ability to bind to VEGF receptors that are primarily expressed in endothelial cells: VEGFR1 (Flt1), VEGFR2 (KDR, Flk1), VEGFR3 (Flt4), neuropilin-1 and neuropilin-2. VEGFA binds to VEGFR1, VEGFR2, as well as neuropilin-1 and neuropilin-2, whereas PlGF and VEGFB bind only to VEGFR1 and neuropilin-1.
VEGF-C and VEGF-D, which share 23% amino acid sequence identity, are uniquely expressed as preproproteins that contain long N- and C-terminal propeptide extensions around the VEGF homology domain (VHD). The C-terminal amino acid sequenze show a pattern of spacing cysteine residues reminescent of the BR3P sequence. Proteolytic processing of the 354 aa VEGF-D preproprotein creates a secreted proprotein. Further processing by extracellular serine proteases, such as plasmin or furin-like proprotein convertases, forms mature VEGF-D consisting of non-covalently linked homodimers of the 117 aa VHD (Stacker et al., 1999; McColl et al., 2003; McColl et al., 2007). Human VEGF-D is ligand for VEGFR-2 and VEGFR-3.
VEGF-D is expressed in fibroblasts and its messenger is stabilized by cell contacts (Orlandini and Oliviero, 2001). Its receptor VEGFR3 is constitutively expressed in lymphatic endothelial cells and in vascular endothelial cells during angiogenesis and in endothelial precursors and in osteoblasts (Tammela et al., 2011; Orlandini et al., 2006).
VEGF-D and VEGFR-3 are expressed in the osteoblasts of the growing plate. The treatment of primary human osteoblasts with recombinant VEGF-D induces the expression of osteocalcin and the formation of mineralized nodules in a dose-dependent manner (Orlandini et al., 2006).
VEGF-C and VEGF-D, which share 23% amino acid sequence identity, are uniquely expressed as preproproteins that contain long N- and C-terminal propeptide extensions around the VEGF homology domain (VHD). The C-terminal amino acid sequenze show a pattern of spacing cysteine residues reminescent of the BR3P sequence. Proteolytic processing of the 354 aa VEGF-D preproprotein creates a secreted proprotein. Further processing by extracellular serine proteases, such as plasmin or furin-like proprotein convertases, forms mature VEGF-D consisting of non-covalently linked homodimers of the 117 aa VHD (Stacker et al., 1999; McColl et al., 2003; McColl et al., 2007). Human VEGF-D is ligand for VEGFR-2 and VEGFR-3.
VEGF-D is expressed in fibroblasts and its messenger is stabilized by cell contacts (Orlandini and Oliviero, 2001). Its receptor VEGFR3 is constitutively expressed in lymphatic endothelial cells and in vascular endothelial cells during angiogenesis and in endothelial precursors and in osteoblasts (Tammela et al., 2011; Orlandini et al., 2006).
VEGF-D and VEGFR-3 are expressed in the osteoblasts of the growing plate. The treatment of primary human osteoblasts with recombinant VEGF-D induces the expression of osteocalcin and the formation of mineralized nodules in a dose-dependent manner (Orlandini et al., 2006).
Expression
It is expressed in adult lung, heart, muscle, and small intestine, and is most abundantly expressed in fetal lungs and skin.
VEGF-D expression in mouse fibroblasts is induced by cell interaction mediated by cadherin 11 (Orlandini et al., 2006; Avantaggiato et al., 1998).
VEGF-D expression in mouse fibroblasts is induced by cell interaction mediated by cadherin 11 (Orlandini et al., 2006; Avantaggiato et al., 1998).
Localisation
Secreted in the extracellular medium.
Function
Growth factor active in angiogenesis, lymphangiogenesis and endothelial cell growth, stimulating their proliferation and migration of blood cells. It may function in the formation of the venous and lymphatic vascular systems during embryogenesis, and also in the maintenance of differentiated lymphatic endothelium in adults. Binds and activates VEGFR-2 (Flk1) and VEGFR-3 (Flt4) receptors.
VEGFD controls the total length and complexity of dendrites both in cultured hippocampal neurons and in the adult mouse hippocampus (Mauceri et al., 2011).
VEGFD together with SDF1α and sFRP1 are major components of stromal cell-derived inducing activity of dopaminergic neurons (Schwartz et al., 2012).
VEGFD controls the total length and complexity of dendrites both in cultured hippocampal neurons and in the adult mouse hippocampus (Mauceri et al., 2011).
VEGFD together with SDF1α and sFRP1 are major components of stromal cell-derived inducing activity of dopaminergic neurons (Schwartz et al., 2012).
Homology
VEGF-D is highly conserved, it shares 94%, 95%, 99%, 97% and 93% aa identity with mouse, rat, equine, canine and bovine VEGF-D, respectively.
Mutations
Note
Single Nucleotide Polymorphism have been described in mRNA UTR, introns or in exons: see NCBI database.
Implicated in
Entity name
Note
VEGF-D prognostic marker for tumor growth and dissemination.
Disease
High level VEGFD in patients with lymphangioleiomyomatosis.
Prognosis
Serum VEGF-D may be a clinically useful diagnostic test that can distinguish sporadic lymphangioleiomyomatosis from other cystic and chylous lung diseases, potentially decreasing the need for lung biopsy (Young et al., 2008).
Entity name
Metastasis
Note
VEGF-D-dependent regulation of the prostaglandin pathway induces lymphatic vessel dilation and subsequent increase of metastatic spread (Karnezis et al., 2012).
Entity name
Soft tissue sarcoma
Note
VEGF-D significantly increases the migration of sarcoma cells through lymphatic endothelial monolayers. The VEGF-D-dependent induced migration through lymphatics might be the reason for relationship between VEGF-D expression and lymph node metastasis in soft tissue sarcomas (Yanagawa et al., 2012).
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 9622638 | 1998 | Embryonic expression pattern of the murine figf gene, a growth factor belonging to platelet-derived growth factor/vascular endothelial growth factor family. | Avantaggiato V et al |
| 11778649 | 2001 | VEGF-D is an X-linked/AP-1 regulated putative onco-angiogen in human glioblastoma multiforme. | Debinski W et al |
| 8617204 | 1996 | A novel vascular endothelial growth factor, VEGF-C, is a ligand for the Flt4 (VEGFR-3) and KDR (VEGFR-2) receptor tyrosine kinases. | Joukov V et al |
| 22340592 | 2012 | VEGF-D promotes tumor metastasis by regulating prostaglandins produced by the collecting lymphatic endothelium. | Karnezis T et al |
| 21745642 | 2011 | Nuclear calcium-VEGFD signaling controls maintenance of dendrite arborization necessary for memory formation. | Mauceri D et al |
| 12963694 | 2003 | Plasmin activates the lymphangiogenic growth factors VEGF-C and VEGF-D. | McColl BK et al |
| 17242158 | 2007 | Proprotein convertases promote processing of VEGF-D, a critical step for binding the angiogenic receptor VEGFR-2. | McColl BK et al |
| 16624815 | 2006 | Vascular endothelial growth factor-D activates VEGFR-3 expressed in osteoblasts inducing their differentiation. | Orlandini M et al |
| 9479493 | 1998 | Human FIGF: cloning, gene structure, and mapping to chromosome Xp22.1 between the PIGA and the GRPR genes. | Rocchigiani M et al |
| 22535492 | 2012 | Stromal factors SDF1α, sFRP1, and VEGFD induce dopaminergic neuron differentiation of human pluripotent stem cells. | Schwartz CM et al |
| 10542248 | 1999 | Biosynthesis of vascular endothelial growth factor-D involves proteolytic processing which generates non-covalent homodimers. | Stacker SA et al |
| 21909098 | 2011 | VEGFR-3 controls tip to stalk conversion at vessel fusion sites by reinforcing Notch signalling. | Tammela T et al |
| 9205122 | 1997 | Molecular cloning of a novel vascular endothelial growth factor, VEGF-D. | Yamada Y et al |
| 22326461 | 2012 | Vascular endothelial growth factor-D is a key molecule that enhances lymphatic metastasis of soft tissue sarcomas. | Yanagawa T et al |
| 18184970 | 2008 | Diagnostic potential of serum VEGF-D for lymphangioleiomyomatosis. | Young LR et al |
Other Information
Locus ID:
NCBI: 2277
MIM: 300091
HGNC: 3708
Ensembl: ENSG00000165197
Variants:
dbSNP: 2277
ClinVar: 2277
TCGA: ENSG00000165197
COSMIC: VEGFD
RNA/Proteins
| Gene ID | Transcript ID | Uniprot |
|---|---|---|
| ENSG00000165197 | ENST00000297904 | O43915 |
Expression (GTEx)
Pathways
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38350547 | 2024 | S100A6 drives lymphatic metastasis of liver cancer via activation of the RAGE/NF-kB/VEGF-D pathway. | 0 |
| 38350547 | 2024 | S100A6 drives lymphatic metastasis of liver cancer via activation of the RAGE/NF-kB/VEGF-D pathway. | 0 |
| 36869765 | 2023 | Vascular endothelial growth factor-D plasma levels and VEGFD genetic variants are independently associated with outcomes in patients with cardiovascular disease. | 3 |
| 37686121 | 2023 | Vascular Endothelial Growth Factor-D (VEGF-D): An Angiogenesis Bypass in Malignant Tumors. | 4 |
| 37986336 | 2023 | Vascular endothelial growth factor-D plasma levels in fluid overload and cardiac function evaluation of elderly patients with cardiovascular disease. | 0 |
| 36869765 | 2023 | Vascular endothelial growth factor-D plasma levels and VEGFD genetic variants are independently associated with outcomes in patients with cardiovascular disease. | 3 |
| 37686121 | 2023 | Vascular Endothelial Growth Factor-D (VEGF-D): An Angiogenesis Bypass in Malignant Tumors. | 4 |
| 37986336 | 2023 | Vascular endothelial growth factor-D plasma levels in fluid overload and cardiac function evaluation of elderly patients with cardiovascular disease. | 0 |
| 35044682 | 2022 | VEGF-D-mediated signaling in tendon cells is involved in degenerative processes. | 7 |
| 35363168 | 2022 | Serum VEGF-D level is correlated with renal dysfunction and proteinuria in patients with diabetic chronic kidney disease. | 4 |
| 35044682 | 2022 | VEGF-D-mediated signaling in tendon cells is involved in degenerative processes. | 7 |
| 35363168 | 2022 | Serum VEGF-D level is correlated with renal dysfunction and proteinuria in patients with diabetic chronic kidney disease. | 4 |
| 31923307 | 2021 | Vascular endothelial growth factor D is a biomarker of fluid overload in haemodialysis patients. | 4 |
| 33545359 | 2021 | circEHBP1 promotes lymphangiogenesis and lymphatic metastasis of bladder cancer via miR-130a-3p/TGFβR1/VEGF-D signaling. | 32 |
| 33653809 | 2021 | Methacholine reactivity in lymphangioleiomyomatosis is inversely related to FEV(1) and VEGF-D. | 0 |
Citation
Marina Rocchigiani ; Salvatore Oliviero
VEGFD (c-fos induced growth factor (vascular endothelial growth factor D))
Atlas Genet Cytogenet Oncol Haematol. 2012-05-01
Online version: http://atlasgeneticsoncology.org/gene/40574/vegfd
