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A1BG (alpha-1-B glycoprotein)

Identity

Other aliasA1B
ABG
GAB
HYST2477
HGNC (Hugo) A1BG
LocusID (NCBI) 1
Atlas_Id 50521
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58346806 and ends at 58353499 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
A1BG (19q13.43) / A1BG (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)A1BG   5
Cards
Entrez_Gene (NCBI)A1BG  1  alpha-1-B glycoprotein
AliasesA1B; ABG; GAB; HYST2477
GeneCards (Weizmann)A1BG
Ensembl hg19 (Hinxton)ENSG00000121410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121410 [Gene_View]  chr19:58346806-58353499 [Contig_View]  A1BG [Vega]
ICGC DataPortalENSG00000121410
TCGA cBioPortalA1BG
AceView (NCBI)A1BG
Genatlas (Paris)A1BG
WikiGenes1
SOURCE (Princeton)A1BG
Genetics Home Reference (NIH)A1BG
Genomic and cartography
GoldenPath hg38 (UCSC)A1BG  -     chr19:58346806-58353499 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)A1BG  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblA1BG - 19q13.43 [CytoView hg19]  A1BG - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIA1BG [Mapview hg19]  A1BG [Mapview hg38]
OMIM138670   
Gene and transcription
Genbank (Entrez)AA484435 AB073611 AF414429 AI022193 AK055885
RefSeq transcript (Entrez)NM_130786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)A1BG
Cluster EST : UnigeneHs.709582 [ NCBI ]
CGAP (NCI)Hs.709582
Alternative Splicing GalleryENSG00000121410
Gene ExpressionA1BG [ NCBI-GEO ]   A1BG [ EBI - ARRAY_EXPRESS ]   A1BG [ SEEK ]   A1BG [ MEM ]
Gene Expression Viewer (FireBrowse)A1BG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1
GTEX Portal (Tissue expression)A1BG
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04217   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04217  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04217
Splice isoforms : SwissVarP04217
PhosPhoSitePlusP04217
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)A1B_glyco/leuk_Ig-like_rcpt    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)A1BG
DMDM Disease mutations1
Blocks (Seattle)A1BG
SuperfamilyP04217
Human Protein AtlasENSG00000121410
Peptide AtlasP04217
HPRD00726
IPIIPI00022895   IPI00644018   IPI00902880   
Protein Interaction databases
DIP (DOE-UCLA)P04217
IntAct (EBI)P04217
FunCoupENSG00000121410
BioGRIDA1BG
STRING (EMBL)A1BG
ZODIACA1BG
Ontologies - Pathways
QuickGOP04217
Ontology : AmiGOplatelet degranulation  molecular_function  extracellular region  extracellular region  extracellular space  biological_process  platelet alpha granule lumen  secretory granule lumen  neutrophil degranulation  extracellular exosome  blood microparticle  ficolin-1-rich granule lumen  
Ontology : EGO-EBIplatelet degranulation  molecular_function  extracellular region  extracellular region  extracellular space  biological_process  platelet alpha granule lumen  secretory granule lumen  neutrophil degranulation  extracellular exosome  blood microparticle  ficolin-1-rich granule lumen  
NDEx NetworkA1BG
Atlas of Cancer Signalling NetworkA1BG
Wikipedia pathwaysA1BG
Orthology - Evolution
OrthoDB1
GeneTree (enSembl)ENSG00000121410
Phylogenetic Trees/Animal Genes : TreeFamA1BG
HOVERGENP04217
HOGENOMP04217
Homologs : HomoloGeneA1BG
Homology/Alignments : Family Browser (UCSC)A1BG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerA1BG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)A1BG
dbVarA1BG
ClinVarA1BG
1000_GenomesA1BG 
Exome Variant ServerA1BG
ExAC (Exome Aggregation Consortium)A1BG (select the gene name)
Genetic variants : HAPMAP1
Genomic Variants (DGV)A1BG [DGVbeta]
DECIPHERA1BG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisA1BG 
Mutations
ICGC Data PortalA1BG 
TCGA Data PortalA1BG 
Broad Tumor PortalA1BG
OASIS PortalA1BG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICA1BG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDA1BG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch A1BG
DgiDB (Drug Gene Interaction Database)A1BG
DoCM (Curated mutations)A1BG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)A1BG (select a term)
intoGenA1BG
Cancer3DA1BG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138670   
Orphanet
MedgenA1BG
Genetic Testing Registry A1BG
NextProtP04217 [Medical]
TSGene1
GENETestsA1BG
Target ValidationA1BG
Huge Navigator A1BG [HugePedia]
snp3D : Map Gene to Disease1
BioCentury BCIQA1BG
ClinGenA1BG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1
Chemical/Pharm GKB GenePA24356
Clinical trialA1BG
Miscellaneous
canSAR (ICR)A1BG (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineA1BG
EVEXA1BG
GoPubMedA1BG
iHOPA1BG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:22:11 CEST 2017

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