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A1CF (APOBEC1 complementation factor)

Identity

Alias_symbol (synonym)ACF
ASP
ACF64
ACF65
APOBEC1CF
Other alias
HGNC (Hugo) A1CF
LocusID (NCBI) 29974
Atlas_Id 60003
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 52559169 and ends at 52645435 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
A1CF (10q11.23) / A1CF (10q11.23)A1CF (10q11.23) / ANKDD1A (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)A1CF   24086
Cards
Entrez_Gene (NCBI)A1CF  29974  APOBEC1 complementation factor
AliasesACF; ACF64; ACF65; APOBEC1CF; 
ASP
GeneCards (Weizmann)A1CF
Ensembl hg19 (Hinxton)ENSG00000148584 [Gene_View]  chr10:52559169-52645435 [Contig_View]  A1CF [Vega]
Ensembl hg38 (Hinxton)ENSG00000148584 [Gene_View]  chr10:52559169-52645435 [Contig_View]  A1CF [Vega]
ICGC DataPortalENSG00000148584
TCGA cBioPortalA1CF
AceView (NCBI)A1CF
Genatlas (Paris)A1CF
WikiGenes29974
SOURCE (Princeton)A1CF
Genetics Home Reference (NIH)A1CF
Genomic and cartography
GoldenPath hg19 (UCSC)A1CF  -     chr10:52559169-52645435 -  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)A1CF  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblA1CF - 10q11.23 [CytoView hg19]  A1CF - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIA1CF [Mapview hg19]  A1CF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF209192 AF271789 AF271790 AJ272078 AJ272079
RefSeq transcript (Entrez)NM_001198818 NM_001198819 NM_001198820 NM_014576 NM_138932 NM_138933
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_029916 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)A1CF
Cluster EST : UnigeneHs.282795 [ NCBI ]
CGAP (NCI)Hs.282795
Alternative Splicing GalleryENSG00000148584
Gene ExpressionA1CF [ NCBI-GEO ]   A1CF [ EBI - ARRAY_EXPRESS ]   A1CF [ SEEK ]   A1CF [ MEM ]
Gene Expression Viewer (FireBrowse)A1CF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29974
GTEX Portal (Tissue expression)A1CF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ94
Splice isoforms : SwissVarQ9NQ94
PhosPhoSitePlusQ9NQ94
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)dsRNA-bd_dom    HnRNP_R/Q_splicing_fac    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)A1CF
DMDM Disease mutations29974
Blocks (Seattle)A1CF
PDB (SRS)2CPD   
PDB (PDBSum)2CPD   
PDB (IMB)2CPD   
PDB (RSDB)2CPD   
Structural Biology KnowledgeBase2CPD   
SCOP (Structural Classification of Proteins)2CPD   
CATH (Classification of proteins structures)2CPD   
SuperfamilyQ9NQ94
Human Protein AtlasENSG00000148584
Peptide AtlasQ9NQ94
HPRD10627
IPIIPI00071360   IPI00299499   IPI00148257   IPI00657723   IPI00657770   IPI00873348   IPI00981528   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ94
IntAct (EBI)Q9NQ94
FunCoupENSG00000148584
BioGRIDA1CF
STRING (EMBL)A1CF
ZODIACA1CF
Ontologies - Pathways
QuickGOQ9NQ94
Ontology : AmiGOnucleotide binding  RNA binding  double-stranded RNA binding  single-stranded RNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  endoplasmic reticulum  mRNA processing  gene expression  cytidine to uridine editing  mRNA modification  apolipoprotein B mRNA editing enzyme complex  protein stabilization  
Ontology : EGO-EBInucleotide binding  RNA binding  double-stranded RNA binding  single-stranded RNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  endoplasmic reticulum  mRNA processing  gene expression  cytidine to uridine editing  mRNA modification  apolipoprotein B mRNA editing enzyme complex  protein stabilization  
NDEx NetworkA1CF
Atlas of Cancer Signalling NetworkA1CF
Wikipedia pathwaysA1CF
Orthology - Evolution
OrthoDB29974
GeneTree (enSembl)ENSG00000148584
Phylogenetic Trees/Animal Genes : TreeFamA1CF
HOVERGENQ9NQ94
HOGENOMQ9NQ94
Homologs : HomoloGeneA1CF
Homology/Alignments : Family Browser (UCSC)A1CF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerA1CF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)A1CF
dbVarA1CF
ClinVarA1CF
1000_GenomesA1CF 
Exome Variant ServerA1CF
ExAC (Exome Aggregation Consortium)A1CF (select the gene name)
Genetic variants : HAPMAP29974
Genomic Variants (DGV)A1CF [DGVbeta]
DECIPHER (Syndromes)10:52559169-52645435  ENSG00000148584
CONAN: Copy Number AnalysisA1CF 
Mutations
ICGC Data PortalA1CF 
TCGA Data PortalA1CF 
Broad Tumor PortalA1CF
OASIS PortalA1CF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICA1CF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDA1CF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch A1CF
DgiDB (Drug Gene Interaction Database)A1CF
DoCM (Curated mutations)A1CF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)A1CF (select a term)
intoGenA1CF
Cancer3DA1CF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenA1CF
Genetic Testing Registry A1CF
NextProtQ9NQ94 [Medical]
TSGene29974
GENETestsA1CF
Huge Navigator A1CF [HugePedia]
snp3D : Map Gene to Disease29974
BioCentury BCIQA1CF
ClinGenA1CF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29974
Chemical/Pharm GKB GenePA162375098
Clinical trialA1CF
Miscellaneous
canSAR (ICR)A1CF (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineA1CF
EVEXA1CF
GoPubMedA1CF
iHOPA1CF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:12 CET 2017

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