Atlas of Genetics and Cytogenetics in Oncology and Haematology


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A3GALT2 (alpha 1,3-galactosyltransferase 2)

Identity

Alias_namesA3GALT2P
alpha 1,3-galactosyltransferase 2, pseudogene
Alias_symbol (synonym)IGBS3S
IGB3S
Other alias
HGNC (Hugo) A3GALT2
LocusID (NCBI) 127550
Atlas_Id 60006
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33772367 and ends at 33786699 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)A3GALT2   30005
Cards
Entrez_Gene (NCBI)A3GALT2  127550  alpha 1,3-galactosyltransferase 2
AliasesA3GALT2P; IGBS3S
GeneCards (Weizmann)A3GALT2
Ensembl hg19 (Hinxton)ENSG00000184389 [Gene_View]  chr1:33772367-33786699 [Contig_View]  A3GALT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184389 [Gene_View]  chr1:33772367-33786699 [Contig_View]  A3GALT2 [Vega]
ICGC DataPortalENSG00000184389
TCGA cBioPortalA3GALT2
AceView (NCBI)A3GALT2
Genatlas (Paris)A3GALT2
WikiGenes127550
SOURCE (Princeton)A3GALT2
Genetics Home Reference (NIH)A3GALT2
Genomic and cartography
GoldenPath hg19 (UCSC)A3GALT2  -     chr1:33772367-33786699 -  1p35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)A3GALT2  -     1p35.1   [Description]    (hg38-Dec_2013)
EnsemblA3GALT2 - 1p35.1 [CytoView hg19]  A3GALT2 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIA3GALT2 [Mapview hg19]  A3GALT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080438
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_012483 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)A3GALT2
Alternative Splicing GalleryENSG00000184389
Gene ExpressionA3GALT2 [ NCBI-GEO ]   A3GALT2 [ EBI - ARRAY_EXPRESS ]   A3GALT2 [ SEEK ]   A3GALT2 [ MEM ]
Gene Expression Viewer (FireBrowse)A3GALT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)127550
GTEX Portal (Tissue expression)A3GALT2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)A3GALT2
DMDM Disease mutations127550
Blocks (Seattle)A3GALT2
Human Protein AtlasENSG00000184389
Protein Interaction databases
FunCoupENSG00000184389
BioGRIDA3GALT2
STRING (EMBL)A3GALT2
ZODIACA3GALT2
Ontologies - Pathways
Huge Navigator A3GALT2 [HugePedia]
snp3D : Map Gene to Disease127550
BioCentury BCIQA3GALT2
ClinGenA3GALT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127550
Chemical/Pharm GKB GenePA142670461
Clinical trialA3GALT2
Miscellaneous
canSAR (ICR)A3GALT2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineA3GALT2
EVEXA3GALT2
GoPubMedA3GALT2
iHOPA3GALT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:13 CET 2017

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