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A3GALT2 (alpha 1,3-galactosyltransferase 2)

Identity

Alias_namesA3GALT2P
alpha 1,3-galactosyltransferase 2, pseudogene
Alias_symbol (synonym)IGBS3S
IGB3S
Other alias
HGNC (Hugo) A3GALT2
LocusID (NCBI) 127550
Atlas_Id 60006
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33306766 and ends at 33321098 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)A3GALT2   30005
Cards
Entrez_Gene (NCBI)A3GALT2  127550  alpha 1,3-galactosyltransferase 2
AliasesA3GALT2P; IGB3S; IGBS3S
GeneCards (Weizmann)A3GALT2
Ensembl hg19 (Hinxton)ENSG00000184389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184389 [Gene_View]  chr1:33306766-33321098 [Contig_View]  A3GALT2 [Vega]
ICGC DataPortalENSG00000184389
TCGA cBioPortalA3GALT2
AceView (NCBI)A3GALT2
Genatlas (Paris)A3GALT2
WikiGenes127550
SOURCE (Princeton)A3GALT2
Genetics Home Reference (NIH)A3GALT2
Genomic and cartography
GoldenPath hg38 (UCSC)A3GALT2  -     chr1:33306766-33321098 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)A3GALT2  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblA3GALT2 - 1p35.1 [CytoView hg19]  A3GALT2 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIA3GALT2 [Mapview hg19]  A3GALT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)A3GALT2
Alternative Splicing GalleryENSG00000184389
Gene ExpressionA3GALT2 [ NCBI-GEO ]   A3GALT2 [ EBI - ARRAY_EXPRESS ]   A3GALT2 [ SEEK ]   A3GALT2 [ MEM ]
Gene Expression Viewer (FireBrowse)A3GALT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127550
GTEX Portal (Tissue expression)A3GALT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtU3KPV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtU3KPV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProU3KPV4
Splice isoforms : SwissVarU3KPV4
PhosPhoSitePlusU3KPV4
Domains : Interpro (EBI)Glyco_trans_6    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_6 (PF03414)   
Domain families : Pfam (NCBI)pfam03414   
Conserved Domain (NCBI)A3GALT2
DMDM Disease mutations127550
Blocks (Seattle)A3GALT2
SuperfamilyU3KPV4
Human Protein AtlasENSG00000184389
Peptide AtlasU3KPV4
Protein Interaction databases
DIP (DOE-UCLA)U3KPV4
IntAct (EBI)U3KPV4
FunCoupENSG00000184389
BioGRIDA3GALT2
STRING (EMBL)A3GALT2
ZODIACA3GALT2
Ontologies - Pathways
QuickGOU3KPV4
Ontology : AmiGOalpha-1,3-galactosyltransferase activity  Golgi apparatus  carbohydrate metabolic process  glycosphingolipid biosynthetic process  glycolipid biosynthetic process  integral component of membrane  transferase activity, transferring glycosyl groups  lipid glycosylation  vesicle  Golgi cisterna membrane  metal ion binding  N-acetyllactosaminide 3-alpha-galactosyltransferase activity  
Ontology : EGO-EBIalpha-1,3-galactosyltransferase activity  Golgi apparatus  carbohydrate metabolic process  glycosphingolipid biosynthetic process  glycolipid biosynthetic process  integral component of membrane  transferase activity, transferring glycosyl groups  lipid glycosylation  vesicle  Golgi cisterna membrane  metal ion binding  N-acetyllactosaminide 3-alpha-galactosyltransferase activity  
NDEx NetworkA3GALT2
Atlas of Cancer Signalling NetworkA3GALT2
Wikipedia pathwaysA3GALT2
Orthology - Evolution
OrthoDB127550
GeneTree (enSembl)ENSG00000184389
Phylogenetic Trees/Animal Genes : TreeFamA3GALT2
HOVERGENU3KPV4
HOGENOMU3KPV4
Homologs : HomoloGeneA3GALT2
Homology/Alignments : Family Browser (UCSC)A3GALT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerA3GALT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)A3GALT2
dbVarA3GALT2
ClinVarA3GALT2
1000_GenomesA3GALT2 
Exome Variant ServerA3GALT2
ExAC (Exome Aggregation Consortium)A3GALT2 (select the gene name)
Genetic variants : HAPMAP127550
Genomic Variants (DGV)A3GALT2 [DGVbeta]
DECIPHERA3GALT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisA3GALT2 
Mutations
ICGC Data PortalA3GALT2 
TCGA Data PortalA3GALT2 
Broad Tumor PortalA3GALT2
OASIS PortalA3GALT2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDA3GALT2
BioMutasearch A3GALT2
DgiDB (Drug Gene Interaction Database)A3GALT2
DoCM (Curated mutations)A3GALT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)A3GALT2 (select a term)
intoGenA3GALT2
Cancer3DA3GALT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenA3GALT2
Genetic Testing Registry A3GALT2
NextProtU3KPV4 [Medical]
TSGene127550
GENETestsA3GALT2
Target ValidationA3GALT2
Huge Navigator A3GALT2 [HugePedia]
snp3D : Map Gene to Disease127550
BioCentury BCIQA3GALT2
ClinGenA3GALT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127550
Chemical/Pharm GKB GenePA142670461
Clinical trialA3GALT2
Miscellaneous
canSAR (ICR)A3GALT2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineA3GALT2
EVEXA3GALT2
GoPubMedA3GALT2
iHOPA3GALT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:36:55 CEST 2017

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