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A4GNT (alpha-1,4-N-acetylglucosaminyltransferase)

Identity

Alias_symbol (synonym)alpha4GnT
Other alias
HGNC (Hugo) A4GNT
LocusID (NCBI) 51146
Atlas_Id 46515
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 138123718 and ends at 138132387 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)A4GNT   17968
Cards
Entrez_Gene (NCBI)A4GNT  51146  alpha-1,4-N-acetylglucosaminyltransferase
Aliasesalpha4GnT
GeneCards (Weizmann)A4GNT
Ensembl hg19 (Hinxton)ENSG00000118017 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118017 [Gene_View]  chr3:138123718-138132387 [Contig_View]  A4GNT [Vega]
ICGC DataPortalENSG00000118017
TCGA cBioPortalA4GNT
AceView (NCBI)A4GNT
Genatlas (Paris)A4GNT
WikiGenes51146
SOURCE (Princeton)A4GNT
Genetics Home Reference (NIH)A4GNT
Genomic and cartography
GoldenPath hg38 (UCSC)A4GNT  -     chr3:138123718-138132387 -  3q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)A4GNT  -     3q22.3   [Description]    (hg19-Feb_2009)
EnsemblA4GNT - 3q22.3 [CytoView hg19]  A4GNT - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBIA4GNT [Mapview hg19]  A4GNT [Mapview hg38]
OMIM616709   
Gene and transcription
Genbank (Entrez)AF141315 AK225668 BC119639 BC119640
RefSeq transcript (Entrez)NM_016161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)A4GNT
Cluster EST : UnigeneHs.278960 [ NCBI ]
CGAP (NCI)Hs.278960
Alternative Splicing GalleryENSG00000118017
Gene ExpressionA4GNT [ NCBI-GEO ]   A4GNT [ EBI - ARRAY_EXPRESS ]   A4GNT [ SEEK ]   A4GNT [ MEM ]
Gene Expression Viewer (FireBrowse)A4GNT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51146
GTEX Portal (Tissue expression)A4GNT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNA3
Splice isoforms : SwissVarQ9UNA3
PhosPhoSitePlusQ9UNA3
Domains : Interpro (EBI)A1-4-GlycosylTfrase_dom    GlycoTrfase_DXD_sugar-bd_CS    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Gb3_synth (PF04572)    Gly_transf_sug (PF04488)   
Domain families : Pfam (NCBI)pfam04572    pfam04488   
Conserved Domain (NCBI)A4GNT
DMDM Disease mutations51146
Blocks (Seattle)A4GNT
SuperfamilyQ9UNA3
Human Protein AtlasENSG00000118017
Peptide AtlasQ9UNA3
HPRD12390
IPIIPI00007712   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNA3
IntAct (EBI)Q9UNA3
FunCoupENSG00000118017
BioGRIDA4GNT
STRING (EMBL)A4GNT
ZODIACA4GNT
Ontologies - Pathways
QuickGOQ9UNA3
Ontology : AmiGOGolgi membrane  carbohydrate metabolic process  protein O-linked glycosylation  acetylglucosaminyltransferase activity  acetylglucosaminyltransferase activity  glycoprotein biosynthetic process  membrane  integral component of membrane  O-glycan processing  negative regulation of epithelial cell proliferation  
Ontology : EGO-EBIGolgi membrane  carbohydrate metabolic process  protein O-linked glycosylation  acetylglucosaminyltransferase activity  acetylglucosaminyltransferase activity  glycoprotein biosynthetic process  membrane  integral component of membrane  O-glycan processing  negative regulation of epithelial cell proliferation  
NDEx NetworkA4GNT
Atlas of Cancer Signalling NetworkA4GNT
Wikipedia pathwaysA4GNT
Orthology - Evolution
OrthoDB51146
GeneTree (enSembl)ENSG00000118017
Phylogenetic Trees/Animal Genes : TreeFamA4GNT
HOVERGENQ9UNA3
HOGENOMQ9UNA3
Homologs : HomoloGeneA4GNT
Homology/Alignments : Family Browser (UCSC)A4GNT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerA4GNT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)A4GNT
dbVarA4GNT
ClinVarA4GNT
1000_GenomesA4GNT 
Exome Variant ServerA4GNT
ExAC (Exome Aggregation Consortium)A4GNT (select the gene name)
Genetic variants : HAPMAP51146
Genomic Variants (DGV)A4GNT [DGVbeta]
DECIPHERA4GNT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisA4GNT 
Mutations
ICGC Data PortalA4GNT 
TCGA Data PortalA4GNT 
Broad Tumor PortalA4GNT
OASIS PortalA4GNT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICA4GNT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDA4GNT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch A4GNT
DgiDB (Drug Gene Interaction Database)A4GNT
DoCM (Curated mutations)A4GNT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)A4GNT (select a term)
intoGenA4GNT
Cancer3DA4GNT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616709   
Orphanet
MedgenA4GNT
Genetic Testing Registry A4GNT
NextProtQ9UNA3 [Medical]
TSGene51146
GENETestsA4GNT
Target ValidationA4GNT
Huge Navigator A4GNT [HugePedia]
snp3D : Map Gene to Disease51146
BioCentury BCIQA4GNT
ClinGenA4GNT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51146
Chemical/Pharm GKB GenePA134960042
Clinical trialA4GNT
Miscellaneous
canSAR (ICR)A4GNT (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineA4GNT
EVEXA4GNT
GoPubMedA4GNT
iHOPA4GNT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:55:35 CEST 2017

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